PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000304788	[[25593570, 25597217], [25604494, 25604811]]	[[25596560, 25597217], [25604494, 25604584]]
NM_152667	[[25593570, 25597217], [25604494, 25604648]]	[[25596560, 25597217], [25604494, 25604584]]

Promoter

Chrom	Start	End	Description
chr20	25604581	25604656	CAGE_peak_1_at_NANP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I025406	25406985	25409441	2.07	[{'connected_gene': 'GINS1', 'score': 550.77}, {'connected_gene': 'LOC105372581', 'score': 550.77}, {'connected_gene': 'PIR61298', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 32.41}, {'connected_gene': 'NANP', 'score': 20.79}, {'connected_gene': 'PYGB', 'score': 20.47}, {'connected_gene': 'ZNF337', 'score': 10.48}, {'connected_gene': 'FAM182B', 'score': 10.13}, {'connected_gene': 'ZNF337-AS1', 'score': 9.78}]
chr20	GH20I025669	25669485	25670553	0.82	[{'connected_gene': 'MED28P7', 'score': 550.77}, {'connected_gene': 'GC20M025672', 'score': 550.77}, {'connected_gene': 'GC20P025670', 'score': 550.77}, {'connected_gene': 'ZNF337', 'score': 11.59}, {'connected_gene': 'NANP', 'score': 11.31}, {'connected_gene': 'ZNF337-AS1', 'score': 11.31}, {'connected_gene': 'RNU6ATAC17P', 'score': 11.23}, {'connected_gene': 'FAM182B', 'score': 7.11}, {'connected_gene': 'RN7SL594P', 'score': 0.37}]
chr20	GH20I025865	25865439	25866400	0.96	[{'connected_gene': 'FAM182B', 'score': 12.31}, {'connected_gene': 'NANP', 'score': 10.17}, {'connected_gene': 'ZNF337-AS1', 'score': 10.17}, {'connected_gene': 'ZNF337', 'score': 1.5}, {'connected_gene': 'PIR36382', 'score': 0.44}, {'connected_gene': 'GC20P025851', 'score': 0.37}]
chr20	GH20I026208	26208085	26209954	1.06	[{'connected_gene': 'MIR663A', 'score': 550.77}, {'connected_gene': 'GC20P026208', 'score': 550.77}, {'connected_gene': 'ZNF337', 'score': 13.84}, {'connected_gene': 'NANP', 'score': 10.22}, {'connected_gene': 'FAM182B', 'score': 4.52}, {'connected_gene': 'ZNF337-AS1', 'score': 4.26}, {'connected_gene': 'GC20P026233', 'score': 0.34}, {'connected_gene': 'MIR663AHG', 'score': 0.26}]
chr20	GH20I025067	25067210	25067908	0.81	[{'connected_gene': 'ZNF337', 'score': 10.57}, {'connected_gene': 'VSX1', 'score': 10.41}, {'connected_gene': 'NANP', 'score': 10.15}, {'connected_gene': 'ENSG00000275358', 'score': 0.77}]
chr20	GH20I025529	25529457	25530395	0.31	[{'connected_gene': 'ZNF337', 'score': 13.31}, {'connected_gene': 'NINL', 'score': 10.81}, {'connected_gene': 'NANP', 'score': 10.43}, {'connected_gene': 'ZNF337-AS1', 'score': 10.43}, {'connected_gene': 'GC20P025533', 'score': 0.77}, {'connected_gene': 'GC20P025489', 'score': 0.26}]
chr20	GH20I025739	25739714	25739914	0.6	[{'connected_gene': 'ZNF337', 'score': 11.75}, {'connected_gene': 'NANP', 'score': 5.16}, {'connected_gene': 'GC20P025734', 'score': 0.44}, {'connected_gene': 'LOC105372582', 'score': 0.39}, {'connected_gene': 'GC20M025711', 'score': 0.22}]
chr20	GH20I025686	25686105	25686254	0.63	[{'connected_gene': 'ZNF337', 'score': 11.62}, {'connected_gene': 'NANP', 'score': 11.22}, {'connected_gene': 'ZNF337-AS1', 'score': 11.22}, {'connected_gene': 'RNU6ATAC17P', 'score': 10.71}, {'connected_gene': 'ENSG00000278383', 'score': 0.44}]
chr20	GH20I025695	25695469	25697601	2.06	[{'connected_gene': 'ZNF337', 'score': 562.7}, {'connected_gene': 'NANP', 'score': 5.23}, {'connected_gene': 'ENSG00000278383', 'score': 0.37}]
chr20	GH20I025633	25633105	25633274	0.67	[{'connected_gene': 'ZNF337', 'score': 12.04}, {'connected_gene': 'RNU6ATAC17P', 'score': 11.84}, {'connected_gene': 'NANP', 'score': 0.44}, {'connected_gene': 'ZNF337-AS1', 'score': 0.44}, {'connected_gene': 'RN7SL594P', 'score': 0.34}]
chr20	GH20I025642	25642534	25643259	0.31	[{'connected_gene': 'ZNF337', 'score': 13.35}, {'connected_gene': 'RNU6ATAC17P', 'score': 11.47}, {'connected_gene': 'RN7SL594P', 'score': 0.39}, {'connected_gene': 'NANP', 'score': 0.37}, {'connected_gene': 'ZNF337-AS1', 'score': 0.37}]
chr20	GH20I025321	25321154	25322354	0.84	[{'connected_gene': 'ABHD12', 'score': 33.87}, {'connected_gene': 'GINS1', 'score': 12.09}, {'connected_gene': 'PYGB', 'score': 10.62}, {'connected_gene': 'NANP', 'score': 4.29}, {'connected_gene': 'GC20P025297', 'score': 0.34}, {'connected_gene': 'GC20P025348', 'score': 0.31}]
chr20	GH20I025317	25317085	25320071	1.42	[{'connected_gene': 'ABHD12', 'score': 51.19}, {'connected_gene': 'ACSS1', 'score': 9.76}, {'connected_gene': 'ZNF337', 'score': 6.43}, {'connected_gene': 'NANP', 'score': 4.29}, {'connected_gene': 'GC20P025297', 'score': 0.34}, {'connected_gene': 'GC20P025348', 'score': 0.31}]
chr20	GH20I025307	25307990	25312451	1.47	[{'connected_gene': 'ABHD12', 'score': 38.0}, {'connected_gene': 'PYGB', 'score': 17.4}, {'connected_gene': 'ENTPD6', 'score': 11.59}, {'connected_gene': 'ZNF337', 'score': 11.35}, {'connected_gene': 'FAM182B', 'score': 10.71}, {'connected_gene': 'ACSS1', 'score': 10.01}, {'connected_gene': 'NANP', 'score': 9.79}, {'connected_gene': 'ZNF337-AS1', 'score': 9.79}, {'connected_gene': 'GC20P025297', 'score': 0.39}, {'connected_gene': 'GC20P025348', 'score': 0.28}]
chr20	GH20I025357	25357982	25359085	0.38	[{'connected_gene': 'ABHD12', 'score': 35.04}, {'connected_gene': 'PYGB', 'score': 30.68}, {'connected_gene': 'NANP', 'score': 4.18}, {'connected_gene': 'GC20M025368', 'score': 0.39}, {'connected_gene': 'GC20P025348', 'score': 0.39}]
chr20	GH20I025525	25525001	25527086	1.26	[{'connected_gene': 'ABHD12', 'score': 24.15}, {'connected_gene': 'ZNF337', 'score': 13.36}, {'connected_gene': 'ENTPD6', 'score': 11.47}, {'connected_gene': 'RNU6ATAC17P', 'score': 11.25}, {'connected_gene': 'NANP', 'score': 10.11}, {'connected_gene': 'ZNF337-AS1', 'score': 10.11}, {'connected_gene': 'GC20P025533', 'score': 0.44}, {'connected_gene': 'GC20P025489', 'score': 0.28}, {'connected_gene': 'NINL', 'score': 0.22}]
chr20	GH20I025240	25240676	25241595	0.62	[{'connected_gene': 'ABHD12', 'score': 27.05}, {'connected_gene': 'ZNF337', 'score': 12.71}, {'connected_gene': 'NANP', 'score': 11.61}, {'connected_gene': 'ZNF337-AS1', 'score': 9.98}, {'connected_gene': 'LOC105372579', 'score': 0.77}, {'connected_gene': 'LOC105372580', 'score': 0.44}]
chr20	GH20I025460	25460601	25462124	0.51	[{'connected_gene': 'ABHD12', 'score': 37.89}, {'connected_gene': 'NANP', 'score': 4.89}, {'connected_gene': 'GC20P025489', 'score': 0.31}, {'connected_gene': 'PIR61820', 'score': 0.29}, {'connected_gene': 'NINL', 'score': 0.13}]
chr20	GH20I025545	25543665	25543874	0.67	[{'connected_gene': 'NINL', 'score': 12.86}, {'connected_gene': 'RNU6ATAC17P', 'score': 10.72}, {'connected_gene': 'NANP', 'score': 5.25}, {'connected_gene': 'PIR48473', 'score': 0.77}, {'connected_gene': 'GC20P025533', 'score': 0.39}]
chr20	GH20I025625	25625626	25625755	0.38	[{'connected_gene': 'NANP', 'score': 550.77}, {'connected_gene': 'ZNF337-AS1', 'score': 550.77}, {'connected_gene': 'FAM182B', 'score': 16.41}, {'connected_gene': 'ZNF337', 'score': 12.22}, {'connected_gene': 'RN7SL594P', 'score': 0.31}]
chr20	GH20I025622	25622226	25625134	2.29	[{'connected_gene': 'NANP', 'score': 564.03}, {'connected_gene': 'ZNF337-AS1', 'score': 562.72}, {'connected_gene': 'ZNF337', 'score': 25.9}, {'connected_gene': 'NINL', 'score': 20.31}, {'connected_gene': 'VN1R108P', 'score': 10.04}, {'connected_gene': 'FAM182B', 'score': 5.5}, {'connected_gene': 'RNU6ATAC17P', 'score': 0.39}]
chr20	GH20I025232	25232639	25240401	1.8	[{'connected_gene': 'LOC105372579', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 37.53}, {'connected_gene': 'ZNF337', 'score': 24.15}, {'connected_gene': 'ZNF337-AS1', 'score': 23.55}, {'connected_gene': 'NANP', 'score': 19.6}, {'connected_gene': 'PYGB', 'score': 18.76}, {'connected_gene': 'NINL', 'score': 12.21}, {'connected_gene': 'ENTPD6', 'score': 11.76}, {'connected_gene': 'FAM182B', 'score': 8.07}, {'connected_gene': 'FAM182A', 'score': 3.96}, {'connected_gene': 'LOC100134868', 'score': 3.75}, {'connected_gene': 'ENSG00000277938', 'score': 0.44}, {'connected_gene': 'LOC105372580', 'score': 0.39}]
chr20	GH20I026009	26009102	26011401	1.48	[{'connected_gene': 'LOC100134868', 'score': 550.77}, {'connected_gene': 'ENSG00000231081', 'score': 550.77}, {'connected_gene': 'FAM182B', 'score': 36.58}, {'connected_gene': 'NANP', 'score': 19.15}, {'connected_gene': 'ABHD12', 'score': 12.25}, {'connected_gene': 'NINL', 'score': 4.49}, {'connected_gene': 'ZNF337', 'score': 3.76}, {'connected_gene': 'GC20P025998', 'score': 0.39}]
chr20	GH20I025531	25531686	25535289	0.96	[{'connected_gene': 'GC20P025533', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 22.6}, {'connected_gene': 'PYGB', 'score': 19.32}, {'connected_gene': 'ZNF337', 'score': 13.31}, {'connected_gene': 'NINL', 'score': 12.04}, {'connected_gene': 'NANP', 'score': 10.43}, {'connected_gene': 'ZNF337-AS1', 'score': 10.43}, {'connected_gene': 'PIR48473', 'score': 0.39}]
chr20	GH20I025284	25284903	25287523	0.57	[{'connected_gene': 'ENSG00000276952', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 35.95}, {'connected_gene': 'PYGB', 'score': 20.65}, {'connected_gene': 'ZNF337', 'score': 9.43}, {'connected_gene': 'NANP', 'score': 4.28}, {'connected_gene': 'GC20M025283', 'score': 0.77}]
chr20	GH20I025548	25548575	25552103	1.13	[{'connected_gene': 'PIR43236', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 32.47}, {'connected_gene': 'ZNF337', 'score': 13.54}, {'connected_gene': 'RNU6ATAC17P', 'score': 10.79}, {'connected_gene': 'NANP', 'score': 10.46}, {'connected_gene': 'ZNF337-AS1', 'score': 10.46}, {'connected_gene': 'FAM182B', 'score': 6.25}, {'connected_gene': 'PIR44041', 'score': 0.44}, {'connected_gene': 'NINL', 'score': 0.28}]