PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367964	[[161592985, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600928], [161601675, 161601753]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600884]]
ENST00000294800	[[161592991, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161601158]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600884]]
ENST00000531221	[[161593779, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600996]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600992]]
ENST00000421702	[[161594012, 161594429], [161595934, 161596192], [161599567, 161599822], [161600157, 161600178], [161600844, 161600948]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599822], [161600157, 161600178], [161600844, 161600948]]
ENST00000533780	[[161596096, 161596192], [161599567, 161600040]]	None
ENST00000534776	[[161596146, 161596192], [161599567, 161599825], [161600157, 161600178], [161600563, 161600822]]	[[161596146, 161596192], [161599567, 161599825], [161600157, 161600167]]
ENST00000534489	[[161599679, 161600178], [161600844, 161600916]]	None
NM_001271036	[[161592985, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600563, 161600837]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600167]]
NM_001271037	[[161592985, 161594429], [161599567, 161599825], [161600157, 161600178], [161600563, 161600837]]	[[161594304, 161594429], [161599567, 161599825], [161600157, 161600167]]
NM_001244753	[[161592985, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161601252]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600992]]
NM_001271035	[[161592985, 161594429], [161595934, 161596192], [161599567, 161599822], [161600157, 161600178], [161600844, 161601252]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599822], [161600157, 161600178], [161600844, 161600992]]
NM_000570	[[161592985, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600928], [161601675, 161601753]]	[[161594304, 161594429], [161595934, 161596192], [161599567, 161599825], [161600157, 161600178], [161600844, 161600884]]

Promoter

Chrom	Start	End	Description
chr1	161600900	161600923	CAGE_peak_3_at_FCGR3B_5end,CAGE_peak_4_at_FCGR3A_5end
chr1	161600942	161600975	CAGE_peak_1_at_FCGR3B_5end
chr1	161600990	161601003	CAGE_peak_2_at_FCGR3B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I161594	161594801	161595600	0.43	[{'connected_gene': 'FCGR2C', 'score': 21.7}, {'connected_gene': 'FCGR3B', 'score': 7.24}, {'connected_gene': 'HSPA7', 'score': 0.39}, {'connected_gene': 'ENSG00000273112', 'score': 0.18}]
chr1	GH01I161605	161605600	161606801	0.88	[{'connected_gene': 'HSPA7', 'score': 550.77}, {'connected_gene': 'FCGR3B', 'score': 14.49}, {'connected_gene': 'FCGR2B', 'score': 13.57}, {'connected_gene': 'TRL-CAA6-1', 'score': 0.44}, {'connected_gene': 'FCGR2C', 'score': 0.34}]
chr1	GH01I161969	161969756	161971201	0.2	[{'connected_gene': 'OLFML2B', 'score': 11.88}, {'connected_gene': 'SDHC', 'score': 4.78}, {'connected_gene': 'FCGR3B', 'score': 4.3}, {'connected_gene': 'GC01P161959', 'score': 0.39}, {'connected_gene': 'PIR31181', 'score': 0.31}]
chr1	GH01I161626	161626001	161627663	0.6	[{'connected_gene': 'FCGR3B', 'score': 14.08}, {'connected_gene': 'FCGR2C', 'score': 4.78}, {'connected_gene': 'SDHC', 'score': 4.5}, {'connected_gene': 'GC01P161621', 'score': 0.44}]
chr1	GH01I161589	161589601	161589800	0.38	[{'connected_gene': 'FCGR3B', 'score': 10.08}, {'connected_gene': 'FCGR2C', 'score': 0.44}, {'connected_gene': 'HSPA7', 'score': 0.37}, {'connected_gene': 'ENSG00000273112', 'score': 0.18}]
chr1	GH01I161653	161653401	161654327	0.72	[{'connected_gene': 'FCGR3B', 'score': 9.21}, {'connected_gene': 'FCGR2B', 'score': 7.17}, {'connected_gene': 'FCGR2C', 'score': 5.71}, {'connected_gene': 'HSPA7', 'score': 5.31}]
chr1	GH01I161637	161637108	161638171	0.54	[{'connected_gene': 'FCGR3B', 'score': 13.57}, {'connected_gene': 'FCGR2B', 'score': 5.98}]
chr1	GH01I161632	161631945	161632004	0.7	[{'connected_gene': 'FCGR3B', 'score': 550.77}, {'connected_gene': 'FCGR2B', 'score': 0.29}]
chr1	GH01I161629	161629801	161630800	0.4	[{'connected_gene': 'FCGR3B', 'score': 550.77}, {'connected_gene': 'FCGR2B', 'score': 10.85}, {'connected_gene': 'GC01P161621', 'score': 0.44}]
chr1	GH01I161631	161631001	161631200	0.9	[{'connected_gene': 'FCGR3B', 'score': 561.28}, {'connected_gene': 'GC01P161621', 'score': 0.44}]
chr1	GH01I161628	161628399	161629258	0.31	[{'connected_gene': 'FCGR3B', 'score': 12.03}, {'connected_gene': 'GC01P161621', 'score': 0.44}]
chr1	GH01I161544	161544401	161550800	1.46	[{'connected_gene': 'FCGR3A', 'score': 550.77}, {'connected_gene': 'FCGR2C', 'score': 27.51}, {'connected_gene': 'FCGR2A', 'score': 12.27}, {'connected_gene': 'FCRLA', 'score': 11.04}, {'connected_gene': 'FCRLB', 'score': 10.83}, {'connected_gene': 'HSPA7', 'score': 9.88}, {'connected_gene': 'FCGR2B', 'score': 8.86}, {'connected_gene': 'RPS23P10', 'score': 7.61}, {'connected_gene': 'FCGR3B', 'score': 7.11}, {'connected_gene': 'TRN-GTT1-1', 'score': 0.44}, {'connected_gene': 'ENSG00000273112', 'score': 0.29}]
chr1	GH01I161642	161642001	161644800	1.17	[{'connected_gene': 'FCGR2B', 'score': 25.31}, {'connected_gene': 'FCGR2C', 'score': 13.24}, {'connected_gene': 'FCRLB', 'score': 11.95}, {'connected_gene': 'FCGR3B', 'score': 11.58}, {'connected_gene': 'HSPA7', 'score': 5.44}]
chr1	GH01I161645	161645742	161648716	0.81	[{'connected_gene': 'FCGR2B', 'score': 26.83}, {'connected_gene': 'FCGR3B', 'score': 13.67}, {'connected_gene': 'FCRLA', 'score': 11.65}]
chr1	GH01I161649	161649999	161651878	0.31	[{'connected_gene': 'FCGR2B', 'score': 28.23}, {'connected_gene': 'FCGR3B', 'score': 6.66}, {'connected_gene': 'HSPA7', 'score': 6.3}, {'connected_gene': 'ATF6', 'score': 5.3}]
chr1	GH01I161661	161661401	161662400	0.4	[{'connected_gene': 'FCGR2B', 'score': 550.77}, {'connected_gene': 'FCGR3B', 'score': 0.31}]
chr1	GH01I161635	161635201	161637000	1	[{'connected_gene': 'FCGR2B', 'score': 28.13}, {'connected_gene': 'FCGR3B', 'score': 8.95}]
chr1	GH01I161638	161638265	161640428	0.69	[{'connected_gene': 'FCGR2B', 'score': 26.66}, {'connected_gene': 'FCGR3B', 'score': 8.89}]
chr1	GH01I161523	161523371	161525201	2.18	[{'connected_gene': 'TRG-GCC2-1', 'score': 550.77}, {'connected_gene': 'HSPA6', 'score': 550.77}, {'connected_gene': 'TRD-GTC10-1', 'score': 550.77}, {'connected_gene': 'PIR56644', 'score': 550.77}, {'connected_gene': 'USP21', 'score': 28.72}, {'connected_gene': 'DUSP12', 'score': 28.63}, {'connected_gene': 'RPS23P10', 'score': 14.48}, {'connected_gene': 'FCGR2C', 'score': 14.23}, {'connected_gene': 'B4GALT3', 'score': 10.67}, {'connected_gene': 'PPOX', 'score': 10.59}, {'connected_gene': 'LOC148430', 'score': 10.5}, {'connected_gene': 'FCGR3B', 'score': 8.43}, {'connected_gene': 'ENSG00000273112', 'score': 0.39}, {'connected_gene': 'FCGR2A', 'score': 0.37}]
chr1	GH01I161539	161539401	161544189	1.5	[{'connected_gene': 'TRN-GTT1-1', 'score': 550.77}, {'connected_gene': 'GC01P161541', 'score': 550.77}, {'connected_gene': 'DUSP12', 'score': 34.23}, {'connected_gene': 'FCGR2C', 'score': 27.12}, {'connected_gene': 'USP21', 'score': 24.08}, {'connected_gene': 'ARHGAP30', 'score': 12.68}, {'connected_gene': 'FCGR2A', 'score': 11.12}, {'connected_gene': 'FCRLB', 'score': 10.83}, {'connected_gene': 'SLAMF7', 'score': 10.47}, {'connected_gene': 'LY9', 'score': 9.88}, {'connected_gene': 'RPS23P10', 'score': 6.98}, {'connected_gene': 'HSPA7', 'score': 5.97}, {'connected_gene': 'FCGR3B', 'score': 4.84}, {'connected_gene': 'FCGR3A', 'score': 0.44}, {'connected_gene': 'ENSG00000273112', 'score': 0.31}]
chr1	GH01I161528	161528801	161533518	1.79	[{'connected_gene': 'TRL-CAG1-6', 'score': 550.77}, {'connected_gene': 'TRG-TCC2-6', 'score': 550.77}, {'connected_gene': 'DUSP12', 'score': 26.62}, {'connected_gene': 'USP21', 'score': 23.93}, {'connected_gene': 'FCGR2C', 'score': 20.97}, {'connected_gene': 'FCGR2A', 'score': 16.51}, {'connected_gene': 'PPOX', 'score': 13.32}, {'connected_gene': 'FCRLA', 'score': 11.16}, {'connected_gene': 'FCGR2B', 'score': 9.25}, {'connected_gene': 'HSPA6', 'score': 8.4}, {'connected_gene': 'FCGR3B', 'score': 7.81}, {'connected_gene': 'RPS23P10', 'score': 7.43}, {'connected_gene': 'ARHGAP30', 'score': 6.5}, {'connected_gene': 'FCGR3A', 'score': 5.19}, {'connected_gene': 'USF1', 'score': 3.75}, {'connected_gene': 'FCER1G', 'score': 3.01}, {'connected_gene': 'ATF6', 'score': 2.48}, {'connected_gene': 'OLFML2B', 'score': 2.06}, {'connected_gene': 'ADAMTS4', 'score': 1.95}, {'connected_gene': 'CFAP126', 'score': 1.43}, {'connected_gene': 'PCP4L1', 'score': 1.28}, {'connected_gene': 'ENSG00000273112', 'score': 0.37}]
chr1	GH01I161675	161675635	161677773	0.72	[{'connected_gene': 'ENSG00000234211', 'score': 550.77}, {'connected_gene': 'FCGR3B', 'score': 10.04}, {'connected_gene': 'FCGR2B', 'score': 8.83}, {'connected_gene': 'RPL31P11', 'score': 0.44}]
chr1	GH01I161620	161620801	161625357	1.69	[{'connected_gene': 'GC01P161621', 'score': 550.77}, {'connected_gene': 'DUSP12', 'score': 43.13}, {'connected_gene': 'USP21', 'score': 33.74}, {'connected_gene': 'FCGR2B', 'score': 27.77}, {'connected_gene': 'FCGR3B', 'score': 16.47}, {'connected_gene': 'DEDD', 'score': 13.23}, {'connected_gene': 'PPOX', 'score': 11.99}, {'connected_gene': 'LOC148430', 'score': 11.44}, {'connected_gene': 'B4GALT3', 'score': 11.27}, {'connected_gene': 'FCGR3A', 'score': 7.97}, {'connected_gene': 'FCGR2A', 'score': 2.66}]
chr1	GH01I161611	161611001	161613600	1.75	[{'connected_gene': 'GC01P161612', 'score': 550.77}, {'connected_gene': 'TRL-CAA6-1', 'score': 550.77}, {'connected_gene': 'GC01P161613', 'score': 550.77}, {'connected_gene': 'USP21', 'score': 32.35}, {'connected_gene': 'FCGR2B', 'score': 27.68}, {'connected_gene': 'DUSP12', 'score': 26.66}, {'connected_gene': 'FCGR2C', 'score': 16.95}, {'connected_gene': 'PPOX', 'score': 13.31}, {'connected_gene': 'FCGR3B', 'score': 12.99}, {'connected_gene': 'ATF6', 'score': 12.15}, {'connected_gene': 'B4GALT3', 'score': 11.46}, {'connected_gene': 'DEDD', 'score': 10.41}, {'connected_gene': 'HSPA6', 'score': 6.42}, {'connected_gene': 'HSPA7', 'score': 5.54}, {'connected_gene': 'FCRLB', 'score': 4.64}, {'connected_gene': 'FCGR3A', 'score': 1.67}]