PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000424155	[[79603486, 79603759], [79606098, 79606347], [79703741, 79704334]]	[[79603591, 79603759], [79606098, 79606347], [79703741, 79703846]]
ENST00000299705	[[79603403, 79603759], [79606098, 79606347], [79614319, 79615189]]	[[79603591, 79603759], [79606098, 79606347], [79614319, 79614556]]
ENST00000536821	[[79603497, 79603759], [79606098, 79606347], [79675309, 79675802]]	[[79603591, 79603759], [79606098, 79606347], [79675309, 79675360]]
ENST00000543455	[[79603500, 79603759], [79606098, 79606347], [79606882, 79606997], [79614319, 79615179]]	[[79603591, 79603759], [79606098, 79606347], [79606882, 79606906]]
ENST00000558562	[[79608272, 79608365], [79614319, 79615164]]	None
NM_001330376	[[79603403, 79603759], [79606098, 79606347], [79703741, 79706228]]	[[79603591, 79603759], [79606098, 79606347], [79703741, 79703846]]
NM_007364	[[79603403, 79603759], [79606098, 79606347], [79614319, 79615189]]	[[79603591, 79603759], [79606098, 79606347], [79614319, 79614556]]
NR_125394	[[79603403, 79603759], [79606098, 79606347], [79606882, 79606997], [79614319, 79615189]]	None
NM_001301203	[[79603403, 79603759], [79606098, 79606347], [79675309, 79677063]]	[[79603591, 79603759], [79606098, 79606347], [79675309, 79675360]]

Promoter

Chrom	Start	End	Description
chr15	79603426	79603475	CAGE_peak_2_at_TMED3_5end
chr15	79603479	79603529	CAGE_peak_1_at_TMED3_5end
chr15	79603543	79603577	CAGE_peak_3_at_TMED3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I078969	78969542	78971252	0.96	[{'connected_gene': 'RASGRF1', 'score': 9.59}, {'connected_gene': 'TMED3', 'score': 5.47}, {'connected_gene': 'LOC100129540', 'score': 0.44}, {'connected_gene': 'GC15M078960', 'score': 0.44}]
chr15	GH15I079314	79314939	79315088	0.74	[{'connected_gene': 'ANKRD34C', 'score': 10.86}, {'connected_gene': 'TMED3', 'score': 0.77}, {'connected_gene': 'GC15P079414', 'score': 0.15}]
chr15	GH15I079310	79310539	79312584	1.96	[{'connected_gene': 'TMED3', 'score': 550.77}, {'connected_gene': 'KIAA1024', 'score': 5.62}, {'connected_gene': 'GC15P079414', 'score': 0.15}]
chr15	GH15I079333	79333239	79333388	0.56	[{'connected_gene': 'TMED3', 'score': 0.34}, {'connected_gene': 'GC15P079414', 'score': 0.18}]
chr15	GH15I079377	79377464	79377576	0.22	[{'connected_gene': 'KIAA1024', 'score': 10.66}, {'connected_gene': 'GC15P079414', 'score': 0.28}, {'connected_gene': 'TMED3', 'score': 0.2}]
chr15	GH15I079328	79328512	79329874	0.89	[{'connected_gene': 'KIAA1024', 'score': 10.04}, {'connected_gene': 'TMED3', 'score': 0.37}, {'connected_gene': 'GC15P079414', 'score': 0.18}]
chr15	GH15I079381	79381159	79381308	0.64	[{'connected_gene': 'KIAA1024', 'score': 10.68}, {'connected_gene': 'GC15P079414', 'score': 0.29}, {'connected_gene': 'TMED3', 'score': 0.19}]
chr15	GH15I079374	79373799	79373948	0.2	[{'connected_gene': 'KIAA1024', 'score': 11.24}, {'connected_gene': 'RNU6-667P', 'score': 9.94}, {'connected_gene': 'GC15P079414', 'score': 0.28}, {'connected_gene': 'TMED3', 'score': 0.21}]
chr15	GH15I079370	79370819	79371048	0.54	[{'connected_gene': 'KIAA1024', 'score': 17.68}, {'connected_gene': 'RNU6-667P', 'score': 9.94}, {'connected_gene': 'TMED3', 'score': 5.06}, {'connected_gene': 'GC15P079414', 'score': 0.26}]
chr15	GH15I079364	79364457	79366775	0.38	[{'connected_gene': 'KIAA1024', 'score': 10.49}, {'connected_gene': 'RNU6-667P', 'score': 9.65}, {'connected_gene': 'TMED3', 'score': 5.21}, {'connected_gene': 'GC15P079414', 'score': 0.25}]
chr15	GH15I079372	79372139	79372288	0.2	[{'connected_gene': 'KIAA1024', 'score': 11.22}, {'connected_gene': 'RNU6-667P', 'score': 9.94}, {'connected_gene': 'GC15P079414', 'score': 0.26}, {'connected_gene': 'TMED3', 'score': 0.21}]
chr15	GH15I079373	79372499	79372648	0.31	[{'connected_gene': 'KIAA1024', 'score': 11.22}, {'connected_gene': 'RNU6-667P', 'score': 9.94}, {'connected_gene': 'TMED3', 'score': 5.01}, {'connected_gene': 'GC15P079414', 'score': 0.26}]
chr15	GH15I079322	79322207	79324014	0.38	[{'connected_gene': 'CTSH', 'score': 5.39}, {'connected_gene': 'TMED3', 'score': 0.39}, {'connected_gene': 'GC15P079414', 'score': 0.16}]
chr15	GH15I079987	79987019	79991000	1.34	[{'connected_gene': 'ENSG00000279719', 'score': 550.77}, {'connected_gene': 'BCL2A1', 'score': 14.18}, {'connected_gene': 'RNU6-667P', 'score': 9.79}, {'connected_gene': 'ST20', 'score': 5.79}, {'connected_gene': 'TMED3', 'score': 4.45}, {'connected_gene': 'ZFAND6', 'score': 3.38}, {'connected_gene': 'LOC100420205', 'score': 0.77}]