PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_032962	[[34310691, 34310924], [34311373, 34311488], [34312783, 34312831], [34313606, 34313764]]	[[34310836, 34310924], [34311373, 34311488], [34312783, 34312831], [34313606, 34313685]]
NM_032963	[[34310691, 34310924], [34311373, 34311488], [34313606, 34313764]]	[[34310836, 34310924], [34311373, 34311488], [34313606, 34313685]]

Promoter

Chrom	Start	End	Description
chr17	34312497	34312510	CAGE_peak_4_at_CCL14_5end
chr17	34313752	34313774	CAGE_peak_1_at_CCL14_5end
chr17	34329097	34329112	CAGE_peak_3_at_CCL14_5end,CAGE_peak_5_at_CCL15_5end
chr17	34329150	34329165	CAGE_peak_1_at_CCL15_5end,CAGE_peak_2_at_CCL14_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I035875	35875239	35877442	1.18	[{'connected_gene': 'TAF15', 'score': 11.63}, {'connected_gene': 'ENSG00000267744', 'score': 5.47}, {'connected_gene': 'CCL14', 'score': 5.37}, {'connected_gene': 'HEATR9', 'score': 4.9}, {'connected_gene': 'CCL5', 'score': 0.77}, {'connected_gene': 'ENSG00000270240', 'score': 0.44}, {'connected_gene': 'LOC105371744', 'score': 0.44}]
chr17	GH17I036030	36030214	36031772	0.2	[{'connected_gene': 'CCL18', 'score': 11.53}, {'connected_gene': 'CCL15', 'score': 11.44}, {'connected_gene': 'CCL14', 'score': 6.03}, {'connected_gene': 'GC17M036102', 'score': 0.44}, {'connected_gene': 'LOC105371746', 'score': 0.29}]
chr17	GH17I035969	35969394	35971164	0.92	[{'connected_gene': 'CCL18', 'score': 10.9}, {'connected_gene': 'CCL14', 'score': 4.55}, {'connected_gene': 'GC17M036105', 'score': 0.77}, {'connected_gene': 'ENSG00000273736', 'score': 0.77}]
chr17	GH17I035986	35986719	35986778	0.61	[{'connected_gene': 'CCL14', 'score': 550.77}, {'connected_gene': 'CCL18', 'score': 10.59}, {'connected_gene': 'ENSG00000275431', 'score': 0.77}, {'connected_gene': 'GC17M036109', 'score': 0.77}, {'connected_gene': 'CCL15-CCL14', 'score': 0.37}]
chr17	GH17I036848	36848970	36852079	1.32	[{'connected_gene': 'DDX52', 'score': 5.37}, {'connected_gene': 'CCL14', 'score': 4.78}, {'connected_gene': 'DUSP14', 'score': 4.53}, {'connected_gene': 'GC17P036813', 'score': 0.28}, {'connected_gene': 'LHX1-DT', 'score': 0.17}]
chr17	GH17I035533	35533194	35542151	2.13	[{'connected_gene': 'SLFN12L', 'score': 565.18}, {'connected_gene': 'AP2B1', 'score': 15.59}, {'connected_gene': 'CCL5', 'score': 13.23}, {'connected_gene': 'ZNF830', 'score': 12.83}, {'connected_gene': 'PEX12', 'score': 12.06}, {'connected_gene': 'LIG3', 'score': 11.68}, {'connected_gene': 'SLFN5', 'score': 7.32}, {'connected_gene': 'TAF5LP1', 'score': 6.78}, {'connected_gene': 'GAS2L2', 'score': 5.5}, {'connected_gene': 'SLFN11', 'score': 5.33}, {'connected_gene': 'CCL14', 'score': 4.84}, {'connected_gene': 'RFFL', 'score': 4.25}, {'connected_gene': 'CCL23', 'score': 1.28}, {'connected_gene': 'ENSG00000267035', 'score': 0.77}, {'connected_gene': 'GC17P035523', 'score': 0.39}]
chr17	GH17I035971	35971910	35975117	1.13	[{'connected_gene': 'GC17M036105', 'score': 550.77}, {'connected_gene': 'CCL18', 'score': 10.9}, {'connected_gene': 'GAS2L2', 'score': 5.12}, {'connected_gene': 'CCL14', 'score': 4.79}, {'connected_gene': 'ENSG00000273736', 'score': 0.44}]