PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000396081	[[35672268, 35673461], [35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35712810, 35712888], [35733793, 35734745]]	[[35673299, 35673461], [35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35712810, 35712888], [35733793, 35733940]]
ENST00000311350	[[35672678, 35673461], [35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35712810, 35712888], [35733793, 35734237], [35734410, 35734745]]	[[35673299, 35673461], [35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35712810, 35712888], [35733793, 35733940]]
ENST00000426180	[[35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35708152, 35708189]]	None
ENST00000438224	[[35674953, 35675068], [35677959, 35678082], [35707043, 35707198], [35733793, 35734211]]	[[35674953, 35675068], [35677959, 35678082], [35707043, 35707198], [35733793, 35733940]]
ENST00000413517	[[35675035, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35733793, 35734176]]	[[35675035, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35733793, 35733940]]
ENST00000427455	[[35707163, 35707198], [35733793, 35734207], [35734410, 35734633]]	[[35707163, 35707198], [35733793, 35733940]]
ENST00000603731	[[35733884, 35734237], [35735029, 35735181]]	[[35733884, 35733940]]
NM_022373	[[35672268, 35673461], [35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35712810, 35712888], [35733793, 35734237], [35734410, 35734772]]	[[35673299, 35673461], [35673921, 35674039], [35674744, 35675068], [35677959, 35678082], [35707043, 35707198], [35709824, 35709938], [35712810, 35712888], [35733793, 35733940]]

Promoter

Chrom	Start	End	Description
chr7	35734086	35734103	CAGE_peak_12_at_HERPUD2_5end
chr7	35734205	35734252	CAGE_peak_8_at_HERPUD2_5end
chr7	35734257	35734280	CAGE_peak_11_at_HERPUD2_5end
chr7	35734486	35734515	CAGE_peak_3_at_HERPUD2_5end
chr7	35734524	35734545	CAGE_peak_5_at_HERPUD2_5end
chr7	35734583	35734592	CAGE_peak_10_at_HERPUD2_5end
chr7	35734607	35734664	CAGE_peak_2_at_HERPUD2_5end
chr7	35734675	35734693	CAGE_peak_6_at_HERPUD2_5end
chr7	35734704	35734718	CAGE_peak_4_at_HERPUD2_5end
chr7	35734730	35734777	CAGE_peak_1_at_HERPUD2_5end
chr7	35734790	35734802	CAGE_peak_7_at_HERPUD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I035718	35718149	35718252	0.45	[{'connected_gene': 'SEPT7', 'score': 13.69}, {'connected_gene': 'HERPUD2', 'score': 12.05}, {'connected_gene': 'SEPT7-AS1', 'score': 11.2}, {'connected_gene': 'LOC100506725', 'score': 0.77}, {'connected_gene': 'GC07M035768', 'score': 0.23}]
chr7	GH07I036188	36188296	36188601	0.75	[{'connected_gene': 'EEPD1', 'score': 7.48}, {'connected_gene': 'HERPUD2', 'score': 1.54}, {'connected_gene': 'PIR39521', 'score': 0.44}, {'connected_gene': 'PIR31290', 'score': 0.39}]
chr7	GH07I036190	36190402	36193799	1.33	[{'connected_gene': 'EEPD1', 'score': 16.52}, {'connected_gene': 'HERPUD2', 'score': 2.78}, {'connected_gene': 'PIR39521', 'score': 0.77}, {'connected_gene': 'PIR31290', 'score': 0.37}]
chr7	GH07I035380	35380792	35381032	0.56	[{'connected_gene': 'HERPUD2', 'score': 1.22}, {'connected_gene': 'LOC105375230', 'score': 0.77}, {'connected_gene': 'LOC401324', 'score': 0.2}]
chr7	GH07I035689	35689620	35698733	2.49	[{'connected_gene': 'HERPUD2', 'score': 596.77}, {'connected_gene': 'LOC101930085', 'score': 576.74}, {'connected_gene': 'PIR44238', 'score': 550.77}, {'connected_gene': 'PIR41144', 'score': 550.77}, {'connected_gene': 'GC07P035696', 'score': 550.77}, {'connected_gene': 'PIR39339', 'score': 550.77}, {'connected_gene': 'PIR39439', 'score': 550.77}, {'connected_gene': 'GC07P035695', 'score': 550.77}, {'connected_gene': 'EEPD1', 'score': 3.72}, {'connected_gene': 'SEPT7', 'score': 1.57}, {'connected_gene': 'PIR50887', 'score': 0.77}, {'connected_gene': 'PIR56078', 'score': 0.77}, {'connected_gene': 'LOC101928421', 'score': 0.21}]
chr7	GH07I035830	35830001	35830400	0.63	[{'connected_gene': 'HERPUD2', 'score': 11.2}, {'connected_gene': 'LOC101930085', 'score': 8.76}, {'connected_gene': 'SEPT7-AS1', 'score': 6.14}, {'connected_gene': 'ENSG00000274328', 'score': 0.37}, {'connected_gene': 'SEPT7', 'score': 0.31}, {'connected_gene': 'GC07M035815', 'score': 0.28}]
chr7	GH07I035687	35687531	35687680	0.31	[{'connected_gene': 'HERPUD2', 'score': 0.44}, {'connected_gene': 'LOC101930085', 'score': 0.44}, {'connected_gene': 'LOC101928421', 'score': 0.22}]
chr7	GH07I035680	35680331	35681012	0.2	[{'connected_gene': 'HERPUD2', 'score': 0.39}, {'connected_gene': 'LOC101930085', 'score': 0.39}, {'connected_gene': 'LOC101928421', 'score': 0.23}]
chr7	GH07I035719	35719706	35720815	0.2	[{'connected_gene': 'HERPUD2', 'score': 17.57}, {'connected_gene': 'SEPT7-AS1', 'score': 11.61}, {'connected_gene': 'SEPT7', 'score': 11.61}, {'connected_gene': 'LOC101930085', 'score': 6.34}, {'connected_gene': 'LOC100506725', 'score': 0.44}, {'connected_gene': 'GC07M035768', 'score': 0.25}]
chr7	GH07I035724	35724328	35731342	1.57	[{'connected_gene': 'HERPUD2', 'score': 20.82}, {'connected_gene': 'SEPT7-AS1', 'score': 17.19}, {'connected_gene': 'SEPT7', 'score': 11.97}, {'connected_gene': 'LOC101930085', 'score': 8.51}, {'connected_gene': 'LOC100506725', 'score': 0.39}, {'connected_gene': 'GC07M035768', 'score': 0.26}]
chr7	GH07I035796	35796160	35798368	0.2	[{'connected_gene': 'HERPUD2', 'score': 11.22}, {'connected_gene': 'SEPT7-AS1', 'score': 0.77}, {'connected_gene': 'LOC442293', 'score': 0.31}]
chr7	GH07I035917	35917091	35917220	0.85	[{'connected_gene': 'HERPUD2', 'score': 10.73}, {'connected_gene': 'GC07P035920', 'score': 0.77}, {'connected_gene': 'PIR51265', 'score': 0.34}]
chr7	GH07I036386	36386702	36397058	2.48	[{'connected_gene': 'KIAA0895', 'score': 590.51}, {'connected_gene': 'ANLN', 'score': 550.77}, {'connected_gene': 'HERPUD2', 'score': 13.07}, {'connected_gene': 'ENSG00000237400', 'score': 0.19}, {'connected_gene': 'GC07P036215', 'score': 0.1}]
chr7	GH07I035648	35648382	35648834	0.88	[{'connected_gene': 'LOC101930085', 'score': 25.16}, {'connected_gene': 'HERPUD2', 'score': 20.31}, {'connected_gene': 'LOC101928421', 'score': 0.37}]
chr7	GH07I035645	35645775	35648137	1.01	[{'connected_gene': 'LOC101930085', 'score': 25.16}, {'connected_gene': 'HERPUD2', 'score': 20.23}, {'connected_gene': 'LOC101928421', 'score': 0.37}]
chr7	GH07I035670	35670591	35671566	0.49	[{'connected_gene': 'LOC101930085', 'score': 11.53}, {'connected_gene': 'SEPT7-AS1', 'score': 11.01}, {'connected_gene': 'SEPT7', 'score': 11.01}, {'connected_gene': 'HERPUD2', 'score': 0.34}, {'connected_gene': 'LOC101928421', 'score': 0.26}]
chr7	GH07I035723	35723131	35723280	0.69	[{'connected_gene': 'SEPT7-AS1', 'score': 11.61}, {'connected_gene': 'SEPT7', 'score': 11.61}, {'connected_gene': 'HERPUD2', 'score': 11.46}, {'connected_gene': 'LOC100506725', 'score': 0.44}, {'connected_gene': 'GC07M035768', 'score': 0.25}]
chr7	GH07I035749	35749605	35750130	0.58	[{'connected_gene': 'SEPT7-AS1', 'score': 10.95}, {'connected_gene': 'SEPT7', 'score': 10.95}, {'connected_gene': 'HERPUD2', 'score': 4.79}, {'connected_gene': 'GC07M035768', 'score': 0.37}, {'connected_gene': 'LOC100506725', 'score': 0.29}]
chr7	GH07I035720	35720870	35723043	0.63	[{'connected_gene': 'SEPT7-AS1', 'score': 16.84}, {'connected_gene': 'HERPUD2', 'score': 16.28}, {'connected_gene': 'SEPT7', 'score': 11.61}, {'connected_gene': 'LOC100506725', 'score': 0.44}, {'connected_gene': 'GC07M035768', 'score': 0.25}]
chr7	GH07I035715	35715807	35717817	0.86	[{'connected_gene': 'LOC100506725', 'score': 550.77}, {'connected_gene': 'LOC101930085', 'score': 25.63}, {'connected_gene': 'HERPUD2', 'score': 20.5}, {'connected_gene': 'SEPT7-AS1', 'score': 11.35}, {'connected_gene': 'SEPT7', 'score': 11.35}, {'connected_gene': 'GC07M035768', 'score': 0.23}]
chr7	GH07I035714	35714717	35715660	0.8	[{'connected_gene': 'LOC100506725', 'score': 550.77}, {'connected_gene': 'LOC101930085', 'score': 11.52}, {'connected_gene': 'SEPT7-AS1', 'score': 11.34}, {'connected_gene': 'SEPT7', 'score': 11.34}, {'connected_gene': 'HERPUD2', 'score': 8.28}, {'connected_gene': 'GC07M035768', 'score': 0.23}]
chr7	GH07I036175	36175529	36176600	0.98	[{'connected_gene': 'PIR31290', 'score': 550.77}, {'connected_gene': 'EEPD1', 'score': 15.88}, {'connected_gene': 'HERPUD2', 'score': 3.26}, {'connected_gene': 'PIR39521', 'score': 0.37}]