Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000538249 [[98462783, 98462829], [98508829, 98508896], [98509124, 98509272], [98511243, 98511346], [98512352, 98512609], [98513112, 98513275], [98513818, 98513973], [98514360, 98515305]] [[98462783, 98462829], [98508829, 98508896], [98509124, 98509272], [98511243, 98511346], [98512352, 98512609], [98513112, 98513275], [98513818, 98513973], [98514360, 98514417]]
ENST00000268042 [[98503927, 98504398], [98508829, 98508896], [98509124, 98509272], [98511243, 98511346], [98512352, 98512609], [98513112, 98513275], [98513818, 98513973], [98514360, 98517068]] [[98504091, 98504398], [98508829, 98508896], [98509124, 98509272], [98511243, 98511346], [98512352, 98512609], [98513112, 98513275], [98513818, 98513973], [98514360, 98514417]]
NM_183376 [[98503932, 98504398], [98508829, 98508896], [98509124, 98509272], [98511243, 98511346], [98512352, 98512609], [98513112, 98513275], [98513818, 98513973], [98514360, 98517068]] [[98504091, 98504398], [98508829, 98508896], [98509124, 98509272], [98511243, 98511346], [98512352, 98512609], [98513112, 98513275], [98513818, 98513973], [98514360, 98514417]]
Promoter
Chrom Start End Description
chr15 98503922 98503964 CAGE_peak_1_at_ARRDC4_5end
chr15 98504178 98504191 CAGE_peak_3_at_ARRDC4_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr15 GH15I097997 97997911 97999176 0.38 [{'connected_gene': 'ARRDC4', 'score': 17.07}, {'connected_gene': 'LINC02251', 'score': 16.81}, {'connected_gene': 'ENSG00000259478', 'score': 0.44}, {'connected_gene': 'LOC105371009', 'score': 0.34}]
chr15 GH15I097994 97994882 97996871 0.77 [{'connected_gene': 'ARRDC4', 'score': 28.44}, {'connected_gene': 'LINC02251', 'score': 0.77}, {'connected_gene': 'ENSG00000259478', 'score': 0.77}, {'connected_gene': 'LOC105371009', 'score': 0.34}]
chr15 GH15I098002 98002214 98005029 1.16 [{'connected_gene': 'ARRDC4', 'score': 37.87}, {'connected_gene': 'LINC02251', 'score': 17.1}, {'connected_gene': 'LOC101927310', 'score': 11.75}, {'connected_gene': 'LOC105371009', 'score': 0.37}]
chr15 GH15I097976 97976280 97979201 1.27 [{'connected_gene': 'ARRDC4', 'score': 28.48}, {'connected_gene': 'LINC02251', 'score': 11.94}, {'connected_gene': 'LOC101927310', 'score': 11.66}, {'connected_gene': 'ENSG00000259478', 'score': 0.39}]
chr15 GH15I097959 97959483 97962930 2.04 [{'connected_gene': 'ARRDC4', 'score': 600.62}, {'connected_gene': 'LINC02251', 'score': 5.26}, {'connected_gene': 'ENSG00000259478', 'score': 0.31}]
chr15 GH15I097501 97501172 97501618 0.26 [{'connected_gene': 'ARRDC4', 'score': 2.25}, {'connected_gene': 'GC15M099102', 'score': 0.44}, {'connected_gene': 'LINC02254', 'score': 0.34}]
chr15 GH15I097503 97503557 97505113 1.29 [{'connected_gene': 'ARRDC4', 'score': 5.4}, {'connected_gene': 'GC15M099102', 'score': 0.44}, {'connected_gene': 'LINC02254', 'score': 0.37}]
chr15 GH15I097954 97954428 97955917 0.52 [{'connected_gene': 'ARRDC4', 'score': 0.44}, {'connected_gene': 'GC15P097917', 'score': 0.28}]
chr15 GH15I097968 97968451 97968640 0.31 [{'connected_gene': 'ARRDC4', 'score': 0.44}, {'connected_gene': 'ENSG00000259478', 'score': 0.34}]
chr15 GH15I097947 97947460 97948419 0.52 [{'connected_gene': 'ARRDC4', 'score': 0.39}, {'connected_gene': 'GC15P097917', 'score': 0.29}]
chr15 GH15I098000 98000124 98001190 0.56 [{'connected_gene': 'LINC02251', 'score': 566.84}, {'connected_gene': 'ARRDC4', 'score': 23.98}, {'connected_gene': 'LOC101927310', 'score': 8.61}, {'connected_gene': 'LOC105371009', 'score': 0.37}]
chr15 GH15I097991 97991989 97993975 1.07 [{'connected_gene': 'ENSG00000259478', 'score': 550.77}, {'connected_gene': 'ARRDC4', 'score': 28.92}, {'connected_gene': 'LINC02251', 'score': 11.48}]
chr15 GH15I097979 97979271 97979420 0.65 [{'connected_gene': 'ENSG00000259478', 'score': 0.39}, {'connected_gene': 'ARRDC4', 'score': 0.37}]

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