PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_001278559	[[6676952, 6677078], [6677476, 6677640], [6678672, 6678772], [6681455, 6681593], [6682012, 6682395], [6682594, 6682704], [6683452, 6683579], [6684110, 6684224], [6691933, 6697910]]	[[6682040, 6682395], [6682594, 6682704], [6683452, 6683579], [6684110, 6684224], [6691933, 6694242]]

Promoter

Chrom	Start	End	Description
chr7	6676930	6676939	CAGE_peak_3_at_ZNF316_5end
chr7	6676943	6676984	CAGE_peak_1_at_ZNF316_5end
chr7	6676986	6677005	CAGE_peak_2_at_ZNF316_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I006270	6270668	6274193	2.13	[{'connected_gene': 'CYTH3', 'score': 550.77}, {'connected_gene': 'GC07P006271', 'score': 550.77}, {'connected_gene': 'ZNF12', 'score': 24.0}, {'connected_gene': 'C7orf26', 'score': 12.0}, {'connected_gene': 'TNRC18', 'score': 11.56}, {'connected_gene': 'ZNF316', 'score': 11.2}, {'connected_gene': 'USP42', 'score': 10.89}, {'connected_gene': 'FAM220A', 'score': 6.71}]
chr7	GH07I006317	6317298	6318769	0.99	[{'connected_gene': 'CYTH3', 'score': 19.2}, {'connected_gene': 'ZNF316', 'score': 17.32}, {'connected_gene': 'ZNF12', 'score': 17.27}, {'connected_gene': 'C7orf26', 'score': 15.25}, {'connected_gene': 'FAM220A', 'score': 12.92}, {'connected_gene': 'USP42', 'score': 12.44}, {'connected_gene': 'EIF2AK1', 'score': 11.8}, {'connected_gene': 'RNU6-218P', 'score': 11.79}, {'connected_gene': 'ANKRD61', 'score': 9.93}, {'connected_gene': 'GC07P006327', 'score': 0.44}, {'connected_gene': 'GC07M006297', 'score': 0.34}]
chr7	GH07I005687	5687202	5702250	1.65	[{'connected_gene': 'USP42', 'score': 22.7}, {'connected_gene': 'RNF216P1', 'score': 19.36}, {'connected_gene': 'C7orf26', 'score': 14.82}, {'connected_gene': 'ACTB', 'score': 13.7}, {'connected_gene': 'ZNF316', 'score': 12.72}, {'connected_gene': 'RBAK', 'score': 12.71}, {'connected_gene': 'FBXL18', 'score': 12.41}, {'connected_gene': 'MIR589', 'score': 12.4}, {'connected_gene': 'FSCN1', 'score': 12.22}, {'connected_gene': 'ENSG00000188365', 'score': 12.2}, {'connected_gene': 'RNF216', 'score': 11.91}, {'connected_gene': 'AP5Z1', 'score': 11.1}, {'connected_gene': 'TNRC18', 'score': 10.77}, {'connected_gene': 'ENSG00000241269', 'score': 10.18}, {'connected_gene': 'WIPI2', 'score': 5.51}, {'connected_gene': 'CCZ1', 'score': 2.17}, {'connected_gene': 'RNF216-IT1', 'score': 0.39}, {'connected_gene': 'MIR6874', 'score': 0.37}]
chr7	GH07I006103	6103541	6107328	2.34	[{'connected_gene': 'USP42', 'score': 560.77}, {'connected_gene': 'GC07M006104', 'score': 550.77}, {'connected_gene': 'EIF2AK1', 'score': 19.48}, {'connected_gene': 'ZNF12', 'score': 19.22}, {'connected_gene': 'C7orf26', 'score': 12.97}, {'connected_gene': 'ZNF316', 'score': 12.77}, {'connected_gene': 'RNU6-218P', 'score': 11.88}, {'connected_gene': 'TNRC18', 'score': 10.52}, {'connected_gene': 'PMS2', 'score': 5.62}, {'connected_gene': 'CCZ1', 'score': 5.13}, {'connected_gene': 'RSPH10B', 'score': 4.71}, {'connected_gene': 'GC07P006161', 'score': 0.22}]
chr7	GH07I006640	6640282	6640779	0.85	[{'connected_gene': 'C7orf26', 'score': 12.14}, {'connected_gene': 'ENSG00000232581', 'score': 12.14}, {'connected_gene': 'ZDHHC4', 'score': 12.12}, {'connected_gene': 'ENSG00000198580', 'score': 11.96}, {'connected_gene': 'PMS2', 'score': 8.88}, {'connected_gene': 'ZNF316', 'score': 0.77}, {'connected_gene': 'PIR55693', 'score': 0.39}, {'connected_gene': 'GC07P006652', 'score': 0.39}]
chr7	GH07I006642	6642661	6643039	0.47	[{'connected_gene': 'C7orf26', 'score': 13.32}, {'connected_gene': 'ENSG00000198580', 'score': 12.27}, {'connected_gene': 'ENSG00000232581', 'score': 11.93}, {'connected_gene': 'ZDHHC4', 'score': 11.9}, {'connected_gene': 'PMS2CL', 'score': 4.69}, {'connected_gene': 'ZNF316', 'score': 0.44}, {'connected_gene': 'GC07P006652', 'score': 0.44}, {'connected_gene': 'PIR55693', 'score': 0.44}]
chr7	GH07I006372	6372827	6379129	2.29	[{'connected_gene': 'RAC1', 'score': 559.65}, {'connected_gene': 'DAGLB', 'score': 38.47}, {'connected_gene': 'ZNF12', 'score': 35.82}, {'connected_gene': 'USP42', 'score': 13.4}, {'connected_gene': 'ZNF316', 'score': 11.89}, {'connected_gene': 'C7orf26', 'score': 10.93}, {'connected_gene': 'CYTH3', 'score': 10.64}, {'connected_gene': 'PMS2', 'score': 9.86}, {'connected_gene': 'ZDHHC4', 'score': 5.89}, {'connected_gene': 'CCZ1', 'score': 5.42}, {'connected_gene': 'PIR50924', 'score': 0.37}]
chr7	GH07I006634	6634402	6636000	0.63	[{'connected_gene': 'ZDHHC4', 'score': 17.73}, {'connected_gene': 'C7orf26', 'score': 12.25}, {'connected_gene': 'ENSG00000232581', 'score': 12.25}, {'connected_gene': 'ENSG00000198580', 'score': 11.74}, {'connected_gene': 'PMS2', 'score': 8.9}, {'connected_gene': 'PMS2CL', 'score': 7.84}, {'connected_gene': 'ZNF316', 'score': 0.77}, {'connected_gene': 'ZNF853', 'score': 0.37}]
chr7	GH07I006629	6629825	6631059	0.69	[{'connected_gene': 'ZDHHC4', 'score': 17.9}, {'connected_gene': 'C7orf26', 'score': 12.26}, {'connected_gene': 'ENSG00000232581', 'score': 12.26}, {'connected_gene': 'ENSG00000198580', 'score': 11.92}, {'connected_gene': 'PMS2', 'score': 9.08}, {'connected_gene': 'ZNF316', 'score': 0.44}, {'connected_gene': 'ZNF853', 'score': 0.39}]
chr7	GH07I006621	6621339	6621999	0.85	[{'connected_gene': 'ZDHHC4', 'score': 8.23}, {'connected_gene': 'ZNF853', 'score': 0.44}, {'connected_gene': 'ZNF316', 'score': 0.37}]
chr7	GH07I005780	5780400	5782259	2.04	[{'connected_gene': 'RNF216', 'score': 578.57}, {'connected_gene': 'C7orf26', 'score': 41.23}, {'connected_gene': 'ZNF316', 'score': 35.2}, {'connected_gene': 'TNRC18', 'score': 30.99}, {'connected_gene': 'ZNF12', 'score': 27.6}, {'connected_gene': 'USP42', 'score': 26.1}, {'connected_gene': 'RNF216P1', 'score': 22.0}, {'connected_gene': 'ANKRD61', 'score': 14.56}, {'connected_gene': 'KDELR2', 'score': 9.79}, {'connected_gene': 'PIR40049', 'score': 0.31}]
chr7	GH07I006007	6007475	6013777	2.1	[{'connected_gene': 'PMS2', 'score': 570.33}, {'connected_gene': 'AIMP2', 'score': 550.77}, {'connected_gene': 'USP42', 'score': 34.14}, {'connected_gene': 'ANKRD61', 'score': 32.83}, {'connected_gene': 'C7orf26', 'score': 27.14}, {'connected_gene': 'EIF2AK1', 'score': 21.84}, {'connected_gene': 'ZNF316', 'score': 19.65}, {'connected_gene': 'RNF216', 'score': 18.95}, {'connected_gene': 'ZNF12', 'score': 12.51}, {'connected_gene': 'PMS2CL', 'score': 11.45}, {'connected_gene': 'TNRC18', 'score': 11.18}, {'connected_gene': 'CCZ1B', 'score': 9.67}, {'connected_gene': 'CCZ1', 'score': 6.93}, {'connected_gene': 'RSPH10B', 'score': 6.25}, {'connected_gene': 'ZDHHC4', 'score': 4.65}, {'connected_gene': 'SNORA80D', 'score': 0.44}]
chr7	GH07I006446	6446607	6450961	2.31	[{'connected_gene': 'DAGLB', 'score': 604.35}, {'connected_gene': 'ZNF316', 'score': 42.44}, {'connected_gene': 'C7orf26', 'score': 36.22}, {'connected_gene': 'ZNF12', 'score': 32.35}, {'connected_gene': 'USP42', 'score': 21.39}, {'connected_gene': 'ANKRD61', 'score': 17.98}, {'connected_gene': 'ENSG00000198580', 'score': 15.33}, {'connected_gene': 'ENSG00000228010', 'score': 14.38}, {'connected_gene': 'KDELR2', 'score': 12.54}, {'connected_gene': 'PMS2', 'score': 9.85}, {'connected_gene': 'RAC1', 'score': 8.89}, {'connected_gene': 'ZDHHC4', 'score': 5.12}, {'connected_gene': 'CCZ1B', 'score': 4.46}, {'connected_gene': 'GC07M006445', 'score': 0.77}]
chr7	GH07I006481	6481453	6485858	2	[{'connected_gene': 'KDELR2', 'score': 568.25}, {'connected_gene': 'DAGLB', 'score': 550.77}, {'connected_gene': 'ZNF316', 'score': 19.72}, {'connected_gene': 'C7orf26', 'score': 19.09}, {'connected_gene': 'USP42', 'score': 17.12}, {'connected_gene': 'ANKRD61', 'score': 14.54}, {'connected_gene': 'ZNF12', 'score': 12.56}, {'connected_gene': 'RNF216', 'score': 9.84}, {'connected_gene': 'CCZ1B', 'score': 9.7}, {'connected_gene': 'GRID2IP', 'score': 6.79}, {'connected_gene': 'GC07M006445', 'score': 0.28}]
chr7	GH07I006014	6014845	6017941	1.12	[{'connected_gene': 'SNORA80D', 'score': 550.77}, {'connected_gene': 'EIF2AK1', 'score': 25.21}, {'connected_gene': 'ZNF12', 'score': 23.98}, {'connected_gene': 'RBAK', 'score': 18.7}, {'connected_gene': 'PMS2', 'score': 18.34}, {'connected_gene': 'C7orf26', 'score': 11.97}, {'connected_gene': 'TNRC18', 'score': 11.56}, {'connected_gene': 'ZNF316', 'score': 11.17}, {'connected_gene': 'USP42', 'score': 11.02}, {'connected_gene': 'PMS2CL', 'score': 10.67}, {'connected_gene': 'ENSG00000198580', 'score': 9.7}, {'connected_gene': 'CCZ1', 'score': 6.73}, {'connected_gene': 'RSPH10B', 'score': 5.72}, {'connected_gene': 'ZDHHC4', 'score': 4.65}, {'connected_gene': 'AIMP2', 'score': 0.44}]
chr7	GH07I006636	6636394	6639167	2.25	[{'connected_gene': 'ZNF316', 'score': 550.77}, {'connected_gene': 'C7orf26', 'score': 14.58}, {'connected_gene': 'ENSG00000232581', 'score': 12.25}, {'connected_gene': 'ZDHHC4', 'score': 12.21}, {'connected_gene': 'ENSG00000198580', 'score': 11.95}, {'connected_gene': 'PMS2CL', 'score': 10.42}, {'connected_gene': 'PMS2', 'score': 5.62}, {'connected_gene': 'ZNF12', 'score': 5.5}, {'connected_gene': 'DAGLB', 'score': 1.71}, {'connected_gene': 'GC07P006652', 'score': 0.39}, {'connected_gene': 'PIR55693', 'score': 0.39}]
chr7	GH07I006623	6623649	6624736	0.82	[{'connected_gene': 'ZNF316', 'score': 12.22}, {'connected_gene': 'C7orf26', 'score': 11.15}, {'connected_gene': 'ZDHHC4', 'score': 8.78}, {'connected_gene': 'CCZ1B', 'score': 5.04}, {'connected_gene': 'ZNF853', 'score': 0.44}]
chr7	GH07I006989	6989687	6992969	0.93	[{'connected_gene': 'ZNF316', 'score': 15.32}, {'connected_gene': 'C7orf26', 'score': 14.07}, {'connected_gene': 'ZDHHC4', 'score': 4.59}, {'connected_gene': 'PIR57863', 'score': 0.44}, {'connected_gene': 'MIR3683', 'score': 0.18}]
chr7	GH07I007562	7562806	7570984	2.76	[{'connected_gene': 'ENSG00000272894', 'score': 573.54}, {'connected_gene': 'MIOS', 'score': 560.51}, {'connected_gene': 'LOC101927391', 'score': 550.77}, {'connected_gene': 'ZNF12', 'score': 30.11}, {'connected_gene': 'ZNF316', 'score': 25.53}, {'connected_gene': 'C7orf26', 'score': 24.77}, {'connected_gene': 'COL28A1', 'score': 20.48}, {'connected_gene': 'RPA3', 'score': 13.85}, {'connected_gene': 'LOC100421597', 'score': 12.0}, {'connected_gene': 'CCZ1B', 'score': 10.48}, {'connected_gene': 'ENSG00000198580', 'score': 9.69}, {'connected_gene': 'ENSG00000272732', 'score': 7.31}]