Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
NM_001130677 [[36827955, 36831187]] [[36829608, 36830748]]
Promoter
Chrom Start End Description
chr17 36831156 36831186 CAGE_peak_2_at_C17orf96_5end
chr17 36831190 36831217 CAGE_peak_1_at_C17orf96_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr17 GH17I038685 38685358 38685973 0.51 [{'connected_gene': 'CISD3', 'score': 12.23}, {'connected_gene': 'PCGF2', 'score': 11.57}, {'connected_gene': 'PSMB3', 'score': 11.04}, {'connected_gene': 'GC17M038684', 'score': 0.44}, {'connected_gene': 'EPOP', 'score': 0.39}, {'connected_gene': 'LOC105371764', 'score': 0.37}]
chr17 GH17I038657 38657117 38658431 1.34 [{'connected_gene': 'EPOP', 'score': 2.04}, {'connected_gene': 'ARHGAP23', 'score': 2.0}, {'connected_gene': 'SRCIN1', 'score': 1.89}, {'connected_gene': 'GC17M038673', 'score': 0.37}, {'connected_gene': 'GC17M038636', 'score': 0.34}]
chr17 GH17I038676 38676254 38676377 0.54 [{'connected_gene': 'EPOP', 'score': 550.77}, {'connected_gene': 'MLLT6', 'score': 12.68}, {'connected_gene': 'PCGF2', 'score': 12.41}, {'connected_gene': 'CISD3', 'score': 12.3}, {'connected_gene': 'PSMB3', 'score': 11.06}, {'connected_gene': 'PIP4K2B', 'score': 11.06}, {'connected_gene': 'CWC25', 'score': 10.23}, {'connected_gene': 'GC17M038684', 'score': 0.37}]
chr17 GH17I038677 38676802 38677600 1.2 [{'connected_gene': 'EPOP', 'score': 550.77}, {'connected_gene': 'MLLT6', 'score': 12.68}, {'connected_gene': 'PCGF2', 'score': 12.41}, {'connected_gene': 'CISD3', 'score': 12.3}, {'connected_gene': 'PSMB3', 'score': 11.06}, {'connected_gene': 'PIP4K2B', 'score': 11.06}, {'connected_gene': 'CWC25', 'score': 10.23}, {'connected_gene': 'GC17M038684', 'score': 0.37}]
chr17 GH17I038671 38671928 38672057 0.54 [{'connected_gene': 'GC17M038673', 'score': 550.77}, {'connected_gene': 'SRCIN1', 'score': 11.69}, {'connected_gene': 'CISD3', 'score': 11.65}, {'connected_gene': 'EPOP', 'score': 0.77}, {'connected_gene': 'GC17M038636', 'score': 0.29}]
chr17 GH17I038693 38693283 38694611 1.09 [{'connected_gene': 'GC17M038684', 'score': 550.77}, {'connected_gene': 'LOC105371764', 'score': 0.39}, {'connected_gene': 'EPOP', 'score': 0.37}]
chr17 GH17I038414 38414318 38416667 1.78 [{'connected_gene': 'GC17M038418', 'score': 550.77}, {'connected_gene': 'GC17M038417', 'score': 550.77}, {'connected_gene': 'PIR32801', 'score': 550.77}, {'connected_gene': 'LOC105371762', 'score': 27.5}, {'connected_gene': 'GPR179', 'score': 11.96}, {'connected_gene': 'RPL19', 'score': 10.22}, {'connected_gene': 'FBXL20', 'score': 9.71}, {'connected_gene': 'EPOP', 'score': 1.72}, {'connected_gene': 'GC17M038410', 'score': 0.77}, {'connected_gene': 'GC17P038493', 'score': 0.44}]
chr17 GH17I038673 38673867 38675577 2.04 [{'connected_gene': 'GC17M038673', 'score': 550.77}, {'connected_gene': 'EPOP', 'score': 550.77}, {'connected_gene': 'PCGF2', 'score': 29.05}, {'connected_gene': 'PIP4K2B', 'score': 16.23}, {'connected_gene': 'MLLT6', 'score': 12.66}, {'connected_gene': 'CISD3', 'score': 12.29}, {'connected_gene': 'PSMB3', 'score': 11.06}, {'connected_gene': 'CWC25', 'score': 10.23}]
chr17 GH17I038674 38672728 38672877 0.59 [{'connected_gene': 'GC17M038673', 'score': 550.77}, {'connected_gene': 'EPOP', 'score': 0.77}, {'connected_gene': 'GC17M038636', 'score': 0.28}]
chr17 GH17I038672 38672428 38672577 0.63 [{'connected_gene': 'GC17M038673', 'score': 550.77}, {'connected_gene': 'EPOP', 'score': 0.77}, {'connected_gene': 'GC17M038636', 'score': 0.28}]