PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000341529	[[66400532, 66400661], [66413221, 66413450], [66420711, 66421000], [66422226, 66422343], [66423260, 66423425], [66424305, 66424493], [66426038, 66426286], [66429961, 66430104], [66431884, 66432009], [66432358, 66432464], [66434673, 66434919], [66436554, 66438686]]	[[66413240, 66413450], [66420711, 66421000], [66422226, 66422343], [66423260, 66423425], [66424305, 66424493], [66426038, 66426286], [66429961, 66430104], [66431884, 66432009], [66432358, 66432464], [66434673, 66434919], [66436554, 66437072]]
ENST00000565334	[[66400592, 66400661], [66413221, 66413450], [66420711, 66420806], [66424373, 66424493], [66426038, 66426286], [66429961, 66430104], [66431884, 66432009], [66432358, 66432464], [66434673, 66434919], [66436554, 66437311]]	[[66413240, 66413450], [66420711, 66420806], [66424373, 66424401]]
ENST00000562048	[[66410243, 66410445], [66413221, 66413450], [66420711, 66420895]]	[[66413240, 66413450], [66420711, 66420895]]
ENST00000568155	[[66410292, 66410503], [66413221, 66413450], [66420711, 66420730]]	[[66413240, 66413450], [66420711, 66420730]]
ENST00000568023	[[66411111, 66411631], [66413221, 66413292]]	[[66413240, 66413292]]
ENST00000563425	[[66413127, 66413450], [66420711, 66421000], [66422226, 66422343], [66423260, 66423425], [66424305, 66424493], [66426038, 66426888]]	[[66413240, 66413450], [66420711, 66421000], [66422226, 66422343], [66423260, 66423425], [66424305, 66424493], [66426038, 66426290]]
ENST00000539168	[[66429357, 66429725], [66429961, 66430104], [66431884, 66432009], [66432358, 66432464], [66434673, 66434919], [66436554, 66437238]]	[[66434765, 66434919], [66436554, 66437072]]
NM_001795	[[66400509, 66400661], [66413221, 66413450], [66420711, 66421000], [66422226, 66422343], [66423260, 66423425], [66424305, 66424493], [66426038, 66426286], [66429961, 66430104], [66431884, 66432009], [66432358, 66432464], [66434673, 66434919], [66436554, 66438689]]	[[66413240, 66413450], [66420711, 66421000], [66422226, 66422343], [66423260, 66423425], [66424305, 66424493], [66426038, 66426286], [66429961, 66430104], [66431884, 66432009], [66432358, 66432464], [66434673, 66434919], [66436554, 66437072]]

Promoter

Chrom	Start	End	Description
chr16	66400533	66400545	CAGE_peak_2_at_CDH5_5end
chr16	66400553	66400565	CAGE_peak_3_at_CDH5_5end
chr16	66400578	66400600	CAGE_peak_1_at_CDH5_5end
chr16	66413154	66413184	CAGE_peak_4_at_CDH5_5end
chr16	66413188	66413195	CAGE_peak_9_at_CDH5_5end
chr16	66413204	66413234	CAGE_peak_5_at_CDH5_5end
chr16	66413237	66413255	CAGE_peak_7_at_CDH5_5end
chr16	66428965	66428968	CAGE_peak_6_at_CDH5_5end
chr16	66429426	66429432	CAGE_peak_8_at_CDH5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I066375	66375758	66377509	0.94	[{'connected_gene': 'LOC105371318', 'score': 550.77}, {'connected_gene': 'GC16P066378', 'score': 550.77}, {'connected_gene': 'GC16M066371', 'score': 550.77}, {'connected_gene': 'LINC00920', 'score': 8.04}, {'connected_gene': 'TK2', 'score': 4.67}, {'connected_gene': 'CDH5', 'score': 0.39}]
chr16	GH16I066373	66373065	66374747	0.43	[{'connected_gene': 'LOC105371318', 'score': 550.77}, {'connected_gene': 'GC16M066371', 'score': 550.77}, {'connected_gene': 'LINC00920', 'score': 7.84}, {'connected_gene': 'CDH5', 'score': 0.44}]
chr16	GH16I066377	66377611	66377670	0.7	[{'connected_gene': 'LOC105371318', 'score': 550.77}, {'connected_gene': 'GC16P066378', 'score': 550.77}, {'connected_gene': 'GC16M066371', 'score': 550.77}, {'connected_gene': 'CDH5', 'score': 550.39}]
chr16	GH16I066378	66378216	66384631	1.49	[{'connected_gene': 'LINC00920', 'score': 34.71}, {'connected_gene': 'NAE1', 'score': 34.53}, {'connected_gene': 'KIAA0895L', 'score': 23.06}, {'connected_gene': 'E2F4', 'score': 13.89}, {'connected_gene': 'ENSG00000260465', 'score': 11.66}, {'connected_gene': 'HSF4', 'score': 9.81}, {'connected_gene': 'CDH5', 'score': 2.12}, {'connected_gene': 'GC16P066378', 'score': 0.77}]
chr16	GH16I066399	66399215	66400804	0.66	[{'connected_gene': 'LINC00920', 'score': 35.35}, {'connected_gene': 'CDH5', 'score': 13.5}, {'connected_gene': 'BEAN1', 'score': 12.23}, {'connected_gene': 'CMTM3', 'score': 11.29}, {'connected_gene': 'DYNC1LI2', 'score': 9.99}, {'connected_gene': 'LOC106699570', 'score': 9.99}, {'connected_gene': 'GC16M066396', 'score': 0.39}, {'connected_gene': 'GC16P066378', 'score': 0.34}]
chr16	GH16I066406	66406025	66410115	1.59	[{'connected_gene': 'LINC00920', 'score': 595.43}, {'connected_gene': 'CDH5', 'score': 11.96}, {'connected_gene': 'CMTM2', 'score': 10.69}, {'connected_gene': 'CMTM4', 'score': 9.79}, {'connected_gene': 'DYNC1LI2', 'score': 9.55}, {'connected_gene': 'LOC106699570', 'score': 9.55}, {'connected_gene': 'CA7', 'score': 9.3}, {'connected_gene': 'RRAD', 'score': 5.48}, {'connected_gene': 'CMTM3', 'score': 1.62}, {'connected_gene': 'GC16M066396', 'score': 0.77}, {'connected_gene': 'GC16P066378', 'score': 0.31}]
chr16	GH16I066357	66357401	66369974	2.49	[{'connected_gene': 'CDH5', 'score': 560.51}, {'connected_gene': 'PIR36503', 'score': 550.77}, {'connected_gene': 'KIAA0895L', 'score': 26.22}, {'connected_gene': 'NAE1', 'score': 22.53}, {'connected_gene': 'LINC00920', 'score': 10.29}, {'connected_gene': 'HSF4', 'score': 9.81}, {'connected_gene': 'LRRC36', 'score': 4.15}, {'connected_gene': 'LOC105371318', 'score': 0.39}, {'connected_gene': 'RNA5SP428', 'score': 0.21}]
chr16	GH16I066387	66387442	66387527	0.63	[{'connected_gene': 'GC16P066378', 'score': 0.44}, {'connected_gene': 'LINC00920', 'score': 0.34}, {'connected_gene': 'CDH5', 'score': 0.34}]
chr16	GH16I066370	66370601	66371000	0.51	[{'connected_gene': 'GC16M066371', 'score': 0.77}, {'connected_gene': 'CDH5', 'score': 0.77}, {'connected_gene': 'LOC105371318', 'score': 0.44}]