PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000417220	[[51976360, 51976724], [51976945, 51977062], [51977364, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982878]]	[[51977371, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982496]]
ENST00000431474	[[51976360, 51976724], [51977364, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982883]]	[[51977371, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982496]]
ENST00000398755	[[51976374, 51976724], [51977369, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982878]]	[[51976705, 51976724], [51977369, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982496]]
ENST00000471971	[[51976386, 51976724], [51977364, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982619]]	[[51976705, 51976724], [51977364, 51977507]]
ENST00000470601	[[51976952, 51977062], [51977364, 51977554], [51978104, 51978233], [51978405, 51978916]]	None
ENST00000470749	[[51977314, 51977554], [51978104, 51978233], [51978405, 51978733]]	None
ENST00000498510	[[51977326, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979644]]	[[51977371, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979644]]
ENST00000475782	[[51978802, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980277]]	None
ENST00000486510	[[51981640, 51981911], [51982326, 51982498]]	None
NM_001003931	[[51976320, 51976724], [51977369, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982883]]	[[51976705, 51976724], [51977369, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982496]]
NM_005485	[[51976320, 51976724], [51977364, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982883]]	[[51977371, 51977554], [51978104, 51978233], [51978405, 51978594], [51978793, 51978926], [51979013, 51979240], [51979510, 51979660], [51979868, 51979955], [51980181, 51980359], [51981755, 51981911], [51982326, 51982496]]

Promoter

Chrom	Start	End	Description
chr3	51976284	51976325	CAGE_peak_3_at_PARP3_5end
chr3	51976338	51976429	CAGE_peak_1_at_PARP3_5end
chr3	51976825	51976837	CAGE_peak_9_at_PARP3_5end
chr3	51976840	51976851	CAGE_peak_11_at_PARP3_5end
chr3	51976988	51977042	CAGE_peak_2_at_PARP3_5end
chr3	51977260	51977283	CAGE_peak_5_at_PARP3_5end
chr3	51977294	51977320	CAGE_peak_4_at_PARP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I051980	51980789	51987619	2.27	[{'connected_gene': 'ABHD14B', 'score': 550.77}, {'connected_gene': 'ACY1', 'score': 550.77}, {'connected_gene': 'GPR62', 'score': 15.16}, {'connected_gene': 'PARP3', 'score': 7.59}, {'connected_gene': 'RPL29', 'score': 5.93}, {'connected_gene': 'ABHD14A-ACY1', 'score': 0.44}, {'connected_gene': 'ABHD14A', 'score': 0.39}]
chr3	GH03I052027	52027849	52036352	0.83	[{'connected_gene': 'NEK4', 'score': 10.03}, {'connected_gene': 'PARP3', 'score': 4.64}, {'connected_gene': 'ABHD14A', 'score': 4.6}, {'connected_gene': 'ITIH4', 'score': 4.23}, {'connected_gene': 'SPCS1', 'score': 3.95}, {'connected_gene': 'LOC105377088', 'score': 0.77}, {'connected_gene': 'GC03P052016', 'score': 0.37}]
chr3	GH03I051994	51994047	51996554	2.09	[{'connected_gene': 'RPL29', 'score': 550.77}, {'connected_gene': 'PBRM1', 'score': 37.11}, {'connected_gene': 'RRP9', 'score': 32.57}, {'connected_gene': 'RAD54L2', 'score': 21.59}, {'connected_gene': 'ABHD14B', 'score': 13.81}, {'connected_gene': 'NISCH', 'score': 11.12}, {'connected_gene': 'GNL3', 'score': 9.69}, {'connected_gene': 'PARP3', 'score': 6.4}, {'connected_gene': 'NT5DC2', 'score': 6.05}]
chr3	GH03I051973	51973200	51977017	2.24	[{'connected_gene': 'PCBP4', 'score': 550.77}, {'connected_gene': 'ABHD14A-ACY1', 'score': 550.77}, {'connected_gene': 'ABHD14A', 'score': 550.77}, {'connected_gene': 'ENSG00000272762', 'score': 550.77}, {'connected_gene': 'PARP3', 'score': 7.64}, {'connected_gene': 'NT5DC2', 'score': 5.33}, {'connected_gene': 'ACY1', 'score': 0.44}, {'connected_gene': 'ABHD14B', 'score': 0.44}]
chr3	GH03I051966	51966064	51969836	2.02	[{'connected_gene': 'PCBP4', 'score': 550.44}, {'connected_gene': 'PARP3', 'score': 8.19}, {'connected_gene': 'GC03P051963', 'score': 0.77}, {'connected_gene': 'ABHD14A', 'score': 0.77}, {'connected_gene': 'ENSG00000272762', 'score': 0.44}, {'connected_gene': 'ABHD14B', 'score': 0.37}]
chr3	GH03I051955	51955129	51957143	1.44	[{'connected_gene': 'GPR62', 'score': 554.83}, {'connected_gene': 'RPL29', 'score': 33.15}, {'connected_gene': 'NISCH', 'score': 14.95}, {'connected_gene': 'GLT8D1', 'score': 14.31}, {'connected_gene': 'RAD54L2', 'score': 12.13}, {'connected_gene': 'NT5DC2', 'score': 9.55}, {'connected_gene': 'PARP3', 'score': 6.3}, {'connected_gene': 'GC03P051963', 'score': 0.44}]
chr3	GH03I051990	51990845	51993878	0.77	[{'connected_gene': 'GPR62', 'score': 11.32}, {'connected_gene': 'DUSP7', 'score': 10.96}, {'connected_gene': 'RAD54L2', 'score': 10.55}, {'connected_gene': 'PARP3', 'score': 6.67}, {'connected_gene': 'RPL29', 'score': 6.33}, {'connected_gene': 'ABHD14B', 'score': 4.36}, {'connected_gene': 'RBM15B', 'score': 3.57}]
chr3	GH03I051953	51953159	51953754	0.87	[{'connected_gene': 'GPR62', 'score': 550.77}, {'connected_gene': 'ENSG00000280422', 'score': 550.77}, {'connected_gene': 'PARP3', 'score': 0.39}]
chr3	GH03I051940	51940694	51943929	2.05	[{'connected_gene': 'PARP3', 'score': 559.63}, {'connected_gene': 'RRP9', 'score': 550.77}, {'connected_gene': 'ABHD14A', 'score': 10.22}, {'connected_gene': 'RPL29', 'score': 7.02}, {'connected_gene': 'ENSG00000280422', 'score': 0.39}]
chr3	GH03I052215	52215619	52221037	1.28	[{'connected_gene': 'ENSG00000280003', 'score': 550.77}, {'connected_gene': 'GLYCTK', 'score': 22.57}, {'connected_gene': 'PPM1M', 'score': 16.2}, {'connected_gene': 'WDR82', 'score': 11.62}, {'connected_gene': 'MIR135A1', 'score': 11.42}, {'connected_gene': 'GLYCTK-AS1', 'score': 11.42}, {'connected_gene': 'DUSP7', 'score': 10.33}, {'connected_gene': 'TWF2', 'score': 8.4}, {'connected_gene': 'PARP3', 'score': 5.15}, {'connected_gene': 'SERBP1P3', 'score': 4.15}, {'connected_gene': 'PIR51375', 'score': 0.39}, {'connected_gene': 'GC03P052204', 'score': 0.39}]