PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290122	[[22328148, 22328210], [22329495, 22329581], [22331939, 22332037], [22332154, 22332289], [22333370, 22333507], [22333865, 22334008], [22336197, 22336350], [22338942, 22339015]]	[[22328167, 22328210], [22329495, 22329581], [22331939, 22332037], [22332154, 22332289], [22333370, 22333507], [22333865, 22334008], [22336197, 22336350], [22338942, 22338960]]
ENST00000374663	[[22328152, 22328210], [22329495, 22329581], [22331939, 22332037], [22332154, 22332561]]	[[22328167, 22328210], [22329495, 22329581], [22331939, 22332037], [22332154, 22332293]]
ENST00000400271	[[22333942, 22334008], [22336197, 22336350], [22336630, 22336678], [22338942, 22339032]]	[[22333942, 22334008], [22336197, 22336350], [22336630, 22336639]]
NM_005747	[[22328148, 22328210], [22329495, 22329581], [22331939, 22332037], [22332154, 22332289], [22333370, 22333507], [22333865, 22334008], [22336197, 22336350], [22338942, 22339035]]	[[22328167, 22328210], [22329495, 22329581], [22331939, 22332037], [22332154, 22332289], [22333370, 22333507], [22333865, 22334008], [22336197, 22336350], [22338942, 22338960]]

Promoter

Chrom	Start	End	Description
chr1	22328001	22328010	CAGE_peak_3_at_CELA3A_5end
chr1	22328144	22328155	CAGE_peak_1_at_CELA3A_5end
chr1	22333411	22333445	CAGE_peak_2_at_CELA3A_5end
chr1	22333871	22333877	CAGE_peak_4_at_CELA3A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I022006	22006736	22007826	0.43	[{'connected_gene': 'CDC42', 'score': 6.68}, {'connected_gene': 'CELA3B', 'score': 5.06}, {'connected_gene': 'RN7SL186P', 'score': 0.77}, {'connected_gene': 'GC01M022003', 'score': 0.77}, {'connected_gene': 'CELA3A', 'score': 0.44}]
chr1	GH01I021996	21996357	22001610	1.12	[{'connected_gene': 'CDC42', 'score': 11.56}, {'connected_gene': 'LINC01635', 'score': 9.24}, {'connected_gene': 'CELA3B', 'score': 6.57}, {'connected_gene': 'CELA3A', 'score': 5.7}, {'connected_gene': 'GC01P021996', 'score': 0.44}]
chr1	GH01I021995	21995348	21996140	0.31	[{'connected_gene': 'CDC42', 'score': 11.68}, {'connected_gene': 'CELA3A', 'score': 5.17}, {'connected_gene': 'GC01P021996', 'score': 0.77}, {'connected_gene': 'CELA3B', 'score': 0.37}]
chr1	GH01I022009	22009336	22010100	0.38	[{'connected_gene': 'RN7SL186P', 'score': 550.77}, {'connected_gene': 'RNU6-776P', 'score': 550.77}, {'connected_gene': 'GC01P022021', 'score': 550.77}, {'connected_gene': 'LINC01635', 'score': 9.04}, {'connected_gene': 'CDC42', 'score': 7.41}, {'connected_gene': 'GC01M022003', 'score': 0.44}, {'connected_gene': 'CELA3A', 'score': 0.44}]
chr1	GH01I022012	22012382	22013136	0.2	[{'connected_gene': 'RNU6-776P', 'score': 550.77}, {'connected_gene': 'GC01P022021', 'score': 550.77}, {'connected_gene': 'CELA3A', 'score': 0.39}, {'connected_gene': 'LINC00339', 'score': 0.39}]
chr1	GH01I022140	22140839	22141185	0.53	[{'connected_gene': 'LOC105376845', 'score': 550.77}, {'connected_gene': 'CELA3A', 'score': 7.07}, {'connected_gene': 'CELA3B', 'score': 7.02}, {'connected_gene': 'LINC00339', 'score': 6.13}, {'connected_gene': 'WNT4', 'score': 0.77}, {'connected_gene': 'GC01P022144', 'score': 0.77}]
chr1	GH01I022001	22001611	22001670	0.81	[{'connected_gene': 'CELA3A', 'score': 550.77}, {'connected_gene': 'GC01P021996', 'score': 0.44}]
chr1	GH01I022004	22004529	22006497	0.56	[{'connected_gene': 'GC01M022003', 'score': 550.77}, {'connected_gene': 'CDC42', 'score': 9.36}, {'connected_gene': 'LINC01635', 'score': 9.1}, {'connected_gene': 'CELA3A', 'score': 0.77}, {'connected_gene': 'RN7SL186P', 'score': 0.44}]
chr1	GH01I021993	21993681	21994993	0.2	[{'connected_gene': 'GC01P021996', 'score': 550.77}, {'connected_gene': 'CDC42', 'score': 9.98}, {'connected_gene': 'CELA3A', 'score': 4.96}, {'connected_gene': 'CELA3B', 'score': 0.37}]
chr1	GH01I022002	22002432	22003609	0.2	[{'connected_gene': 'GC01M022003', 'score': 550.77}, {'connected_gene': 'CELA3A', 'score': 550.77}, {'connected_gene': 'LINC01635', 'score': 9.16}, {'connected_gene': 'CDC42', 'score': 9.14}]