PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000331079	[[20409075, 20409320], [20409564, 20409700], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530799]]	[[20409292, 20409320], [20409564, 20409700], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20529959]]
ENST00000330796	[[20409103, 20409320], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530840]]	[[20409292, 20409320], [20411289, 20411372], [20413756, 20413786]]
ENST00000437750	[[20409261, 20409320], [20411289, 20411372], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530254]]	[[20409292, 20409320], [20411289, 20411372], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20529959]]
ENST00000529592	[[20426991, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530828]]	None
ENST00000525188	[[20409185, 20409320], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20415336, 20415400], [20417348, 20417508], [20419122, 20419208]]	[[20409292, 20409320], [20411289, 20411372], [20413756, 20413786]]
ENST00000526583	[[20409292, 20409700], [20411289, 20411372], [20413756, 20413797]]	[[20409292, 20409457]]
NM_001145166	[[20409075, 20409320], [20411289, 20411372], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530879]]	[[20409292, 20409320], [20411289, 20411372], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20529959]]
NM_001145167	[[20409075, 20409320], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530879]]	[[20411356, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20529959]]
NM_005788	[[20409075, 20409320], [20409564, 20409700], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20530879]]	[[20409292, 20409320], [20409564, 20409700], [20411289, 20411372], [20413756, 20413806], [20414442, 20414545], [20417348, 20417508], [20419122, 20419267], [20424464, 20424530], [20429456, 20429578], [20448311, 20448411], [20473675, 20473754], [20483525, 20483713], [20486005, 20486092], [20515464, 20515515], [20515712, 20515800], [20529849, 20529959]]

Promoter

Chrom	Start	End	Description
chr11	20409070	20409164	CAGE_peak_2_at_PRMT3_5end
chr11	20409172	20409217	CAGE_peak_3_at_PRMT3_5end
chr11	20409227	20409298	CAGE_peak_1_at_PRMT3_5end
chr11	20409299	20409309	CAGE_peak_4_at_PRMT3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I020564	20564935	20565084	0.2	[{'connected_gene': 'SLC6A5', 'score': 11.01}, {'connected_gene': 'LOC105376584', 'score': 0.44}, {'connected_gene': 'PRMT3', 'score': 0.1}]
chr11	GH11I020566	20565876	20566056	0.2	[{'connected_gene': 'SLC6A5', 'score': 10.68}, {'connected_gene': 'LOC105376584', 'score': 0.44}, {'connected_gene': 'PRMT3', 'score': 0.1}]
chr11	GH11I020565	20565415	20565564	0.2	[{'connected_gene': 'SLC6A5', 'score': 10.68}, {'connected_gene': 'LOC105376584', 'score': 0.44}, {'connected_gene': 'PRMT3', 'score': 0.1}]
chr11	GH11I020366	20366246	20369782	1.13	[{'connected_gene': 'HTATIP2', 'score': 44.95}, {'connected_gene': 'SLC6A5', 'score': 9.17}, {'connected_gene': 'PRMT3', 'score': 0.37}]
chr11	GH11I020496	20496975	20497824	0.2	[{'connected_gene': 'HTATIP2', 'score': 16.52}, {'connected_gene': 'LOC105376584', 'score': 0.18}, {'connected_gene': 'PRMT3', 'score': 0.14}]
chr11	GH11I020473	20473989	20475485	0.72	[{'connected_gene': 'HTATIP2', 'score': 11.45}, {'connected_gene': 'PRMT3', 'score': 0.17}, {'connected_gene': 'LOC105376584', 'score': 0.15}]
chr11	GH11I020458	20458895	20460199	0.95	[{'connected_gene': 'HTATIP2', 'score': 21.31}, {'connected_gene': 'PRMT3', 'score': 0.19}, {'connected_gene': 'LOC105376584', 'score': 0.14}]
chr11	GH11I020362	20362695	20365897	2	[{'connected_gene': 'HTATIP2', 'score': 624.18}, {'connected_gene': 'PRMT3', 'score': 0.34}]
chr11	GH11I020544	20544343	20545294	0.31	[{'connected_gene': 'LOC105376586', 'score': 9.64}, {'connected_gene': 'NELL1', 'score': 9.64}, {'connected_gene': 'LOC105376584', 'score': 0.31}, {'connected_gene': 'PRMT3', 'score': 0.1}]
chr11	GH11I020386	20386392	20389652	2.08	[{'connected_gene': 'PRMT3', 'score': 557.24}, {'connected_gene': 'HTATIP2', 'score': 29.51}, {'connected_gene': 'LOC105376584', 'score': 0.09}]