PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
BRCA1	7	HNRNPU	12	affinity chromatography technology	Ertych N (2016)	1
BRCA1	7	MED21	1	biochemical, affinity chromatography technology	Scully R (1997), Scully R (1997)	2
TP53	0	CCT2	1	affinity chromatography technology, affinity chromatography technology	Fogeron ML (2013), Horikawa I (2014)	2
TAF7	0	THRA	2	affinity chromatography technology, affinity chromatography technology	Lavigne AC (1999), Lavigne AC (1999)	2
RPA1	0	EEF1A2	18	affinity chromatography technology	Marechal A (2014)	1
TP53	0	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down	Wang C (2003), Akakura S (2001), Peng Y (2001), Nagata Y (1999), Wang J (2011), Burch L (2004), Taipale M (2012), Fogeron ML (2013), Walerych D (2004)	9
ESR1	0	MNAT1	0	pull down, affinity chromatography technology	Talukder AH (2003), Talukder AH (2003)	2
CCNH	3	GTF2H4	2	biochemical	Havugimana PC (2012)	1
CDK7	0	CALCOCO2	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
ARRB2	5	HNRNPF	5	affinity chromatography technology	Xiao K (2007)	1
TP53	0	RPA1	0	pull down, affinity chromatography technology, affinity chromatography technology, pull down	Romanova LY (2004), Romanova LY (2004), Riva F (2001), Glanzer JG (2013)	4
EEF1A2	18	5430	0	biochemical	Wan C (2015)	1
ESR1	0	HNRNPF	5	affinity chromatography technology	Tarallo R (2011)	1
CDK9	3	SUPT5H	2	enzymatic study, pull down, enzymatic study, pull down, enzymatic study, enzymatic study	Garber ME (2000), Garber ME (2000), Larochelle S (2012), Larochelle S (2012), Larochelle S (2006), Michels AA (2004)	6
730211	0	HSP90AA1	7	biochemical	Havugimana PC (2012)	1
RPA1	0	MNAT1	0	affinity chromatography technology	Marechal A (2014)	1
CDK7	0	GTF2H1	0	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Rossignol M (1997), Shiekhattar R (1995), Yee A (1995), Kershnar E (1998), Reardon JT (1996), Varjosalo M (2013)	6
CDC37	0	APP	1	two hybrid	Soler-Lopez M (2011)	1
CCNE1	1	CDKN1B	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology	Shanahan F (1999), Connor MK (2003), Connor MK (2003), Jeon Y (2007), Bustany S (2011), Xu X (1999), Xu X (1999), Datta NS (1998), Orend G (1998), Liu J (1997), Sheaff RJ (1997), Sheaff RJ (1997), Bresnahan WA (1996), Vlach J (1996), Vlach J (1997), Ciarallo S (2002), Ciarallo S (2002), Ciarallo S (2002), Chu I (2007), Chu I (2007), Chen J (1996), Levkau B (1998), Larrea MD (2009), Grimmler M (2007), Chen TC (2014), Qiu H (2016)	26
CCNE1	1	E2F1	0	affinity chromatography technology	Dhillon NK (2002)	1
BRCA1	7	AR	3	pull down, pull down, two hybrid	Park JJ (2000), Yeh S (2000), Yeh S (2000)	3
HDAC2	1	ESR1	0	affinity chromatography technology, affinity chromatography technology	Itoh Y (2007), Tarallo R (2011)	2
RPA3	2	RPA2	0	biochemical, x-ray crystallography, biochemical, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Bochkareva E (1998), Bochkareva E (2002), Havugimana PC (2012), Du Y (2009), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	7
HNRNPF	5	SUPT5H	2	affinity chromatography technology	Huttlin EL (2017)	1
TAF7	0	CDK7	0	pull down	Gegonne A (2008)	1
GTF2E2	2	APP	1	pull down, pull down	Olah J (2011), Virok DP (2011)	2
CDK1	0	HSP90AA1	7	affinity chromatography technology	Garcia-Morales P (2007)	1
BRCA1	7	5430	0	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Krum SA (2003), Scully R (1997), Scully R (1997), Chiba N (2001), Chiba N (2001), Krum SA (2003), Starita LM (2005), Woods NT (2012), Bennett CB (2008), Hill SJ (2014), Winton CE (2016)	11
GTF2H2	0	GTF2H4	2	affinity chromatography technology, biochemical, biochemical, pull down	Vermeulen W (2000), Havugimana PC (2012), Wan C (2015), Luo J (2015)	4
CDK7	0	POLR2B	3	enzymatic study	Cujec TP (1997)	1
RPA1	0	CCNA2	1	pull down	Gibbs E (1996)	1
GTF2H1	0	GTF2H4	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CDK7	0	DHX38	3	affinity chromatography technology	Huttlin EL (2015)	1
CCNB1	3	CDK2	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shanahan F (1999), Di Fiore B (2010), Nishiyama A (2000), Wolthuis R (2008), Desai D (1995), Varjosalo M (2013), Varjosalo M (2013), So J (2015), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	11
GTF2H5	0	MNAT1	0	affinity chromatography technology	Hein MY (2015)	1
CDK2	0	CDKN1B	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, unspecified method, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Youn CK (2005), Porter LA (2003), Law BK (2002), Connor MK (2003), Naderi S (2005), Varshochi R (2005), Hsu SP (2008), McAndrew CW (2007), Peiretti A (2003), Peiretti A (2003), Haddad MM (1999), Xu X (1999), Xu X (1999), Radu M (2008), Mori S (1999), Schulman BA (1998), Kokontis JM (1998), Orend G (1998), Wu G (1997), Liu J (1997), Sheaff RJ (1997), Vlach J (1996), Vlach J (1996), Vlach J (1997), Liu S (2009), Rosner M (2004), Ciarallo S (2002), Ciarallo S (2002), Wang Y (2008), Bockstaele L (2006), Chu I (2007), Chu I (2007), Levkau B (1998), Levkau B (1998), Lacy ER (2005), Zhao J (1998), Seo DW (2006), Kossatz U (2006), Grimmler M (2007), Grimmler M (2007), Varjosalo M (2013), Varjosalo M (2013), Montagnoli A (1999), So J (2015), Huttlin EL (2015), Hein MY (2015), Chen TC (2014), Lovisa S (2016), Qiu H (2016), Carrasco-Garcia E (2011), Huttlin EL (2017), Hu B (2017)	52
CCT2	1	CCNE1	1	affinity chromatography technology	Won KA (1998)	1
730211	0	HSP90AB1	2	biochemical	Havugimana PC (2012)	1
BRCA1	7	CCT2	1	affinity chromatography technology	Ertych N (2016)	1
CCNA2	1	CDK7	0	affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology	Larochelle S (2006), Garrett S (2001), Huttlin EL (2015), Huttlin EL (2017)	4
CCNE1	1	AR	3	affinity chromatography technology	Yamamoto A (2000)	1
RUVBL2	4	APP	1	pull down	Olah J (2011)	1
GTF2H3	2	GTF2H1	0	pull down, biochemical, affinity chromatography technology, pull down, biochemical, biochemical, affinity chromatography technology, pull down	Chymkowitch P (2011), Humbert S (1994), Humbert S (1994), Jawhari A (2002), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Luo J (2015)	8
730394	0	CDK7	0	affinity chromatography technology	Huttlin EL (2017)	1
TP53	0	GTF2H4	2	far western blotting	Leveillard T (1996)	1
CDK7	0	CDK2	0	enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology	Drapkin R (1996), Cheng A (2005), Xu X (1999), Higashi H (1996), Aprelikova O (1995), Moisan A (2004), Larochelle S (2012), Larochelle S (2006), Larochelle S (2006), Garrett S (2001), Garrett S (2001), Lolli G (2004), Varjosalo M (2013), So J (2015)	14
5430	0	CTDP1	2	biochemical, pull down, affinity chromatography technology, enzymatic study, enzymatic study, pull down	Scully R (1997), Scully R (1997), Scully R (1997), Bharucha DC (2002), Friedl EM (2003), Yu X (2003)	6
GTF2H1	0	GTF2E1	1	pull down, x-ray crystallography, pull down, pull down	Di Lello P (2008), Okuda M (2008), Okuda M (2008), Okuda M (2008)	4
ERCC3	3	CDK7	0	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Giglia-Mari G (2004), Rossignol M (1997), Yee A (1995), Jeronimo C (2007), Jeronimo C (2007), Reardon JT (1996), Chen D (1999), Varjosalo M (2013), Huttlin EL (2017), Luo J (2015)	10
RPA1	0	RPA2	0	affinity chromatography technology, x-ray crystallography, affinity chromatography technology, biochemical, biochemical, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shao RG (1999), Bochkareva E (2002), Gong Z (2011), Havugimana PC (2012), Kristensen AR (2012), Ghospurkar PL (2014), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Elia AE (2015), Elia AE (2015), Huttlin EL (2017), Feeney L (2017)	13
CDK20	0	CCNH	3	two hybrid, affinity chromatography technology	Qiu H (2008), Qiu H (2008)	2
UVSSA	5	GTF2H1	0	affinity chromatography technology	Fei J (2012)	1
RPA2	0	CCNH	3	affinity chromatography technology	Marechal A (2014)	1
CDK9	3	CCAR2	9	affinity chromatography technology, biochemical	Jeronimo C (2007), Kristensen AR (2012)	2
RPA1	0	RUVBL2	4	affinity chromatography technology	Marechal A (2014)	1
CDK7	0	MTA1	3	affinity chromatography technology	Talukder AH (2003)	1
CCT2	1	HSP90AB1	2	pull down	Lin YF (2012)	1
CDK7	0	CCNH	3	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, biochemical, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down	Maekelae TP (1994), Maekelae TP (1994), Maekelae TP (1994), Maekelae TP (1994), Yee A (1995), Garber ME (2000), Garber ME (2000), Jeronimo C (2007), Reardon JT (1996), Liu J (1997), Cujec TP (1997), Epie N (2005), Bockstaele L (2006), Tassan JP (1995), Chen D (1999), Havugimana PC (2012), Poterszman A (1997), Nguyen VT (2001), Garrett S (2001), Pinhero R (2004), Varjosalo M (2013), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017), Luo J (2015)	25
RUVBL2	4	HNRNPU	12	affinity chromatography technology	Jeronimo C (2007)	1
AR	3	GTF2H1	0	affinity chromatography technology	Lee DK (2000)	1
BRCA1	7	HDAC2	1	pull down, affinity chromatography technology, genetic interference	Yarden RI (1999), Chang S (2011), Shen JP (2017)	3
CCNA2	1	BRCA1	7	affinity chromatography technology, pull down	Ruffner H (1999), Wang H (1997)	2
FKBP5	0	APP	1	pull down	Olah J (2011)	1
HSP90AA1	7	BRCA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Johnson N (2013), Johnson N (2013), Ertych N (2016)	3
CDK9	3	ANXA2	0	biochemical	Garcia-Martinez LF (1997)	1
MNAT1	0	GTF2H3	2	biochemical	Havugimana PC (2012)	1
CCND2	2	CDK2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sweeney KJ (1997), Huttlin EL (2015), Huttlin EL (2017)	3
UBC	7	GTF2H1	0	pull down	Zhu Q (2004)	1
E2F1	0	CDK7	0	affinity chromatography technology	Vandel L (1999)	1
ERCC3	3	CCNH	3	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Giglia-Mari G (2004), Jeronimo C (2007), Drapkin R (1996), Drapkin R (1996), Huttlin EL (2015), Huttlin EL (2017), Luo J (2015)	7
CDK7	0	CDK20	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CCAR2	9	BRCA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hiraike H (2010), Hiraike H (2010), Ertych N (2016)	3
MTA1	3	MNAT1	0	two hybrid, pull down, pull down, affinity chromatography technology, affinity chromatography technology	Talukder AH (2003), Talukder AH (2003), Talukder AH (2003), Talukder AH (2003), Talukder AH (2003)	5
HSP90AA1	7	APP	1	affinity chromatography technology	Kumar P (2007)	1
ESR1	0	SRPK2	1	affinity chromatography technology	Tarallo R (2011)	1
TP53	0	UBC	7	affinity chromatography technology, affinity chromatography technology	Ayroldi E (2014), Ke JY (2014)	2
GTF2H1	0	E2F1	0	enzymatic study, affinity chromatography technology, pull down	Vandel L (1999), Vandel L (1999), Pearson A (1997)	3
GTF2H1	0	RPA1	0	affinity chromatography technology	Araujo SJ (2001)	1
GTF2E2	2	GTF2E1	1	affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, biochemical, x-ray crystallography, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Watanabe T (2003), Maxon ME (1994), Okamoto T (1998), Yamamoto S (2001), Jeronimo C (2007), Havugimana PC (2012), Jawhari A (2006), Jawhari A (2006), Jawhari A (2006), Wan C (2015), Huttlin EL (2017)	11
MTA1	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Mazumdar A (2001), Mazumdar A (2001), Mazumdar A (2001), Li DQ (2010), Yan C (2003), Balasenthil S (2007), Ohshiro K (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	16
CDK1	0	CCNB2	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Varjosalo M (2013), So J (2015), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Hein MY (2015), Huttlin EL (2017)	7
CDK1	0	MBP	0	enzymatic study	Plun-Favreau H (2007)	1
UVSSA	5	ERCC2	4	affinity chromatography technology	Fei J (2012)	1
GTF2H5	0	CDK7	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Giglia-Mari G (2004), Varjosalo M (2013), Hein MY (2015)	3
UBC	7	E2F1	0	affinity chromatography technology	Rizos H (2007)	1
CDC37	0	CDK6	0	pull down	Stepanova L (1996)	1
CCNA2	1	TAF7	0	affinity chromatography technology	Hein MY (2015)	1
ERCC3	3	GTF2H3	2	biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Giglia-Mari G (2004), Marinoni JC (1997), Jeronimo C (2007), Humbert S (1994), Humbert S (1994), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Luo J (2015)	9
CDK7	0	PI4KB	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
UBC	7	PRKCI	1	pull down	Zhang X (2017)	1
CDK1	0	HIST1H1A	0	enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study	Zhan Q (1999), Horton LE (1997), Pan ZQ (1993), Pan ZQ (1993), Yarden RI (2002), Golsteyn RM (1995), Jiang W (1998), Badea T (2002), Bae Y (2013), Linares JF (2011), Sasaki T (2008), Chen M (2012), Tang J (2008)	13
HSP90AA1	7	CDK7	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Taipale M (2012), Huttlin EL (2015), Huttlin EL (2017)	3
PRKCI	1	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology	Brajenovic M (2004), Taipale M (2012)	2
CDK2	0	HIST1H1A	0	enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study	Jeon Y (2007), Lunn CL (2010), Kiviharju-af Haellstroem TM (2007), Kim YB (2000), Xu X (1999), Mori S (1999), Lauper N (1998), Lauper N (1998), Orend G (1998), Wu G (1997), Horton LE (1997), Higashi H (1996), Musgrove EA (1996), Pan ZQ (1993), Pan ZQ (1993), Poon RY (1993), Sueoka N (1999), Baldassarre G (2000), Bendjennat M (2003), Liu S (2009), Sarmento LM (2005), Aprelikova O (1995), Giono LE (2007), Liu Y (2004), Dynlacht BD (1997), Mandal M (1998), Chang TS (2003), Colas P (1996), Jiang W (1998), Ezhevsky SA (1997), Thomas DM (2004), Song MS (2011), Naderi S (1999), Akagi M (1996), Lee B (2006), Grimmler M (2007), Zhang WN (2013), Iyer NG (2007), Morris L (2000), Chen M (2012), Guidoboni M (2005), Ghiani C (2001)	42
CDK7	0	HLA-DQA1	1	two hybrid	Wang J (2011)	1
UBC	7	CDKN1B	1	affinity chromatography technology	Huang G (2014)	1
TP53	0	RPA2	0	affinity chromatography technology	Li X (2015)	1
BRCA1	7	GTF2E1	1	biochemical	Scully R (1997)	1
CDK7	0	HDAC2	1	affinity chromatography technology	Talukder AH (2003)	1
BRCA1	7	CDK1	0	pull down	Wang H (1997)	1
CDK7	0	HIST1H1A	0	enzymatic study	Drapkin R (1996)	1
GTF2H1	0	MNAT1	0	biochemical, biochemical, pull down	Kershnar E (1998), Havugimana PC (2012), Luo J (2015)	3
MNAT1	0	BRCA1	7	affinity chromatography technology, two hybrid	Moisan A (2004), Woodsmith J (2012)	2
RUVBL2	4	CCAR2	9	affinity chromatography technology	Jeronimo C (2007)	1
CDK7	0	HSP90AB1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Huttlin EL (2015), Huttlin EL (2017)	3
ESR1	0	HSP90AA1	7	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Nair SC (1996), Lee MO (2002), Fan M (2005), Tateishi Y (2004), Fiskus W (2007), Powell E (2010), Suzuki T (2011), Berry NB (2008), Sumanasekera WK (2003), Taipale M (2012), Donley C (2013), Donley C (2013), Dhamad AE (2016)	13
RUVBL2	4	POLR2B	3	affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Cloutier P (2017)	2
RPA2	0	CCAR2	9	affinity chromatography technology	Marechal A (2014)	1
SUPT5H	2	POLR2B	3	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
THRA	2	CDK7	0	two hybrid	Nevado J (2004)	1
UBC	7	EEF1A2	18	affinity chromatography technology	Bish RA (2007)	1
CDK9	3	FKBP5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Varjosalo M (2013), Varjosalo M (2013), Taipale M (2014), Taipale M (2014), Huttlin EL (2015), Huttlin EL (2017), Luo K (2017)	8
5430	0	GTF2H4	2	biochemical, pull down	Scully R (1997), Scully R (1997)	2
ESR1	0	HSP90AB1	2	affinity chromatography technology	Dhamad AE (2016)	1
CDK7	0	FKBP5	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CCNB2	3	CDK7	0	biochemical	Wan C (2015)	1
E2F1	0	CCNA2	1	affinity chromatography technology, pull down, affinity chromatography technology	Xu M (1994), Xu M (1994), Schulman BA (1998)	3
AR	3	E2F1	0	affinity chromatography technology, affinity chromatography technology	Li Y (2012), Li Y (2012)	2
CDKN1B	1	CDK6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology	Lin J (2001), Radu M (2008), Bockstaele L (2006), Chen TC (2014), Carrasco-Garcia E (2011), Huttlin EL (2017)	6
GTF2H1	0	RPA2	0	affinity chromatography technology	Araujo SJ (2001)	1
MED21	1	GTF2E1	1	affinity chromatography technology, biochemical	Scully R (1997), Scully R (1997)	2
GTF2H3	2	AR	3	affinity chromatography technology, pull down	Chymkowitch P (2011), Chymkowitch P (2011)	2
CDK7	0	BRCA1	7	affinity chromatography technology	Moisan A (2004)	1
BRCA1	7	RUVBL2	4	affinity chromatography technology, affinity chromatography technology	Hill SJ (2014), Ertych N (2016)	2
ARRB2	5	HIST1H1A	0	affinity chromatography technology	Xiao K (2007)	1
UBC	7	CALCOCO2	0	pull down, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, pull down, affinity chromatography technology, imaging technique, pull down, imaging technique	Fenner BJ (2009), Fenner BJ (2009), Rolland T (2014), Tumbarello DA (2015), Xie X (2015), Xie X (2015), Xie X (2015), Xie X (2015), Ordureau A (2015), Minowa-Nozawa A (2017)	10
CDK7	0	CDK9	3	enzymatic study, biochemical, enzymatic study	Kim JB (2001), Garcia-Martinez LF (1997), Larochelle S (2012)	3
TP53	0	HSP90AB1	2	affinity chromatography technology	Fogeron ML (2013)	1
CDK20	0	POLR2B	3	affinity chromatography technology	Varjosalo M (2013)	1
CDK9	3	HNRNPU	12	affinity chromatography technology	Jeronimo C (2007)	1
TP53	0	GTF2H1	0	pull down, pull down, pull down, pull down, far western blotting, pull down, x-ray crystallography	Xiao H (1994), Di Lello P (2008), Okuda M (2008), Leveillard T (1996), Leveillard T (1996), Di Lello P (2006), Di Lello P (2006)	7
ARRB2	5	HSP90AB1	2	affinity chromatography technology	Xiao K (2007)	1
CCNH	3	MNAT1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Talukder AH (2003), Bockstaele L (2006), Havugimana PC (2012), Pinhero R (2004), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	8
CDK7	0	HSD17B4	0	two hybrid	Wang J (2011)	1
CDK7	0	HNRNPF	5	biochemical	Wan C (2015)	1
CCND2	2	RPA3	2	affinity chromatography technology	Russo LC (2017)	1
TAF7	0	CDK9	3	pull down	Gegonne A (2008)	1
TP53	0	ANXA2	0	pull down	Lu H (1997)	1
CDK9	3	MBP	0	enzymatic study, enzymatic study	Pinhero R (2004), Grana X (1994)	2
RPA3	2	HNRNPU	12	affinity chromatography technology	Marechal A (2014)	1
GTF2H5	0	GTF2H1	0	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
CDK20	0	CDK2	0	enzymatic study	Liu Y (2004)	1
RPA2	0	RUVBL2	4	affinity chromatography technology	Marechal A (2014)	1
SUPT5H	2	CCNH	3	pull down	Garber ME (2000)	1
5430	0	RUVBL2	4	biochemical, affinity chromatography technology	Havugimana PC (2012), Cloutier P (2017)	2
CDK6	0	AR	3	imaging technique	Chen TC (2014)	1
CCNB1	3	CCNB2	3	biochemical	Wan C (2015)	1
CCNH	3	MTA1	3	affinity chromatography technology	Talukder AH (2003)	1
730394	0	GTF2H4	2	affinity chromatography technology, biochemical, affinity chromatography technology	Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	3
CDK2	0	TP53	0	enzymatic study, enzymatic study, imaging technique	Luciani MG (2000), Tsai CH (2009), Chen TC (2014)	3
ARRB2	5	ANXA2	0	affinity chromatography technology	Xiao K (2007)	1
CDK9	3	TCEA1	0	affinity chromatography technology, pull down, imaging technique	Cojocaru M (2011), Cojocaru M (2011), Cojocaru M (2011)	3
5430	0	RPA1	0	affinity chromatography technology	Fousteri M (2006)	1
ESR1	0	SRPK1	2	affinity chromatography technology	Tarallo R (2011)	1
CDK9	3	HSP90AB1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Varjosalo M (2013), Huttlin EL (2015), Huttlin EL (2017)	4
BRCA1	7	RPA1	0	affinity chromatography technology, imaging technique, affinity chromatography technology	Suhasini AN (2011), Mok MT (2010), Tian F (2013)	3
CDK2	0	CDK1	0	affinity chromatography technology, affinity chromatography technology	Neganova I (2011), Huttlin EL (2017)	2
RPA1	0	CCNH	3	affinity chromatography technology	Marechal A (2014)	1
TP53	0	MTA1	3	pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Yao YL (2003), Li DQ (2010), Moon HE (2007), Moon HE (2007), Li DQ (2009), Li DQ (2009)	6
CDK7	0	730211	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
THRA	2	MED21	1	affinity chromatography technology, two hybrid, pull down	Ito M (1999), Nevado J (2004), Nevado J (2004)	3
CCNA2	1	CDK6	0	affinity chromatography technology	Datta NS (1998)	1
ERCC5	0	ERCC2	4	affinity chromatography technology, pull down	Iyer N (1996), Iyer N (1996)	2
TCEA1	0	CDK7	0	pull down, affinity chromatography technology	Pan G (1997), Huttlin EL (2015)	2
CDK2	0	CDK6	0	biochemical, imaging technique	Cheng A (2000), Chen TC (2014)	2
CDK7	0	ESR1	0	enzymatic study	Chen D (2000)	1
RPA1	0	ANXA2	0	affinity chromatography technology	Marechal A (2014)	1
5430	0	TCEA1	0	x-ray crystallography, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Kettenberger H (2003), Archambault J (1998), Pan G (1997), Jeronimo C (2007), Kim J (2010), Fousteri M (2006), Havugimana PC (2012)	7
HSP90AA1	7	SRPK1	2	affinity chromatography technology	Taipale M (2012)	1
CDK6	0	FKBP5	0	affinity chromatography technology	Huttlin EL (2017)	1
CDK7	0	EEF1A2	18	affinity chromatography technology	Huttlin EL (2015)	1
GTF2H1	0	CCNH	3	biochemical, biochemical, affinity chromatography technology	Shiekhattar R (1995), Kershnar E (1998), Araujo SJ (2001)	3
ARRB2	5	SRPK2	1	affinity chromatography technology	Xiao K (2007)	1
HNRNPU	12	CDK7	0	affinity chromatography technology, affinity chromatography technology	Kim MK (1999), Jeronimo C (2007)	2
GTF2H3	2	730394	0	two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Rolland T (2014), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
CCNH	3	POLR2B	3	enzymatic study	Cujec TP (1997)	1
SRPK1	2	TP53	0	two hybrid, pull down, affinity chromatography technology	Peidis P (2011), Peidis P (2011), Peidis P (2011)	3
CCNB1	3	CDK7	0	enzymatic study, affinity chromatography technology, affinity chromatography technology	Garrett S (2001), Huttlin EL (2015), Huttlin EL (2017)	3
HNRNPU	12	HSD17B4	0	affinity chromatography technology	Hein MY (2015)	1
RPA3	2	CDK7	0	affinity chromatography technology	Marechal A (2014)	1
CDK9	3	5430	0	enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, biochemical, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study	Moisan A (2006), Yoh SM (2007), Benedikt A (2011), Gegonne A (2008), Friedl EM (2003), He N (2011), Pinhero R (2004), Ramanathan Y (2001), Chen R (2004), Larochelle S (2012), Bharucha DC (2002), Kim YK (2002), Garriga J (2003), Wu L (2014), Yik JH (2003), Pinhero R (2004), Shchebet A (2012), Rovnak J (2012), Baumli S (2008), Yik JH (2005), Yik JH (2004)	21
UVSSA	5	ERCC3	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fei J (2012), Fei J (2012), Fei J (2012)	3
SRPK2	1	GTF2E1	1	enzymatic study	Varjosalo M (2013)	1
MNAT1	0	GTF2H2	0	affinity chromatography technology, pull down	Drapkin R (1996), Luo J (2015)	2
AR	3	CCNH	3	pull down	Lee DK (2000)	1
CCNA2	1	CDK1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Henneke G (2003), Amador V (2007), Horton LE (1997), Lin ML (2011), Lin ML (2011), OConnor PM (1993), Varjosalo M (2013), Kikuchi R (2014), Mateo F (2009), So J (2015), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	13
MNAT1	0	5430	0	enzymatic study, enzymatic study	Larochelle S (2006), Lolli G (2004)	2
CDK7	0	MNAT1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down	Talukder AH (2003), Yee A (1995), Jeronimo C (2007), Busso D (2000), Cujec TP (1997), Tassan JP (1995), Chen D (1999), Havugimana PC (2012), Varjosalo M (2013), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017), Luo J (2015)	13
CCNB2	3	CDK2	0	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ramachandran N (2004), Varjosalo M (2013), Huttlin EL (2015), Huttlin EL (2017)	4
ESR1	0	ANXA2	0	affinity chromatography technology	Tarallo R (2011)	1
CDK7	0	GTF2H3	2	affinity chromatography technology, pull down, affinity chromatography technology	Jeronimo C (2007), Chymkowitch P (2011), Varjosalo M (2013)	3
TP53	0	CDK6	0	fluorescent resonance energy transfe	Ivanov AA (2017)	1
CDK9	3	CCNH	3	biochemical	Garcia-Martinez LF (1997)	1
ERCC3	3	ERCC2	4	biochemical, affinity chromatography technology, pull down, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, pull down	Giglia-Mari G (2004), Marinoni JC (1997), Drapkin R (1994), Iyer N (1996), Iyer N (1996), Havugimana PC (2012), Stehling O (2012), Luo J (2015), Luo J (2015)	9
ANXA2	0	APP	1	pull down	Olah J (2011)	1
BRCA1	7	HNRNPF	5	affinity chromatography technology	Ertych N (2016)	1
TP53	0	CDK9	3	genetic interference, pull down, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology	De Falco G (2000), Claudio PP (2006), Claudio PP (2006), Claudio PP (2006), Claudio PP (2006), Claudio PP (2006)	6
RPA3	2	RUVBL2	4	affinity chromatography technology	Marechal A (2014)	1
CDC37	0	FKBP5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014), Taipale M (2014), Taipale M (2014)	4
BRCA1	7	CCNB1	3	pull down, affinity chromatography technology, enzymatic study	Wang H (1997), Shabbeer S (2013), Shabbeer S (2013)	3
ERCC2	4	GTF2H1	0	pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Drapkin R (1994), Rossignol M (1997), Seroz T (2000), Luo J (2015), Luo J (2015)	5
GTF2H5	0	ERCC2	4	affinity chromatography technology	Hein MY (2015)	1
ERCC2	4	MNAT1	0	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, pull down	Busso D (2000), Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017), Luo J (2015)	5
CDK7	0	3327	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
RPA2	0	HNRNPF	5	affinity chromatography technology, biochemical	Marechal A (2014), Wan C (2015)	2
ARRB2	5	HNRNPU	12	affinity chromatography technology	Xiao K (2007)	1
CDK9	3	RUVBL2	4	affinity chromatography technology	Jeronimo C (2007)	1
ERCC3	3	GTF2E2	2	pull down	Maxon ME (1994)	1
TP53	0	ERCC3	3	pull down, affinity chromatography technology, pull down, pull down, pull down	Wang XW (1995), Wang XW (1995), Qadri I (2002), Qadri I (2002), Leveillard T (1996)	5
CDK7	0	APP	1	pull down	Olah J (2011)	1
ERCC5	0	BRCA1	7	affinity chromatography technology, pull down	Trego KS (2016), Trego KS (2016)	2
CDK7	0	3323	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CDK9	3	3327	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
730394	0	ERCC3	3	affinity chromatography technology, biochemical, affinity chromatography technology	Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	3
ERCC3	3	GTF2H1	0	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Giglia-Mari G (2004), Marinoni JC (1997), Rossignol M (1997), Jeronimo C (2007), Drapkin R (1996), Araujo SJ (2001), Havugimana PC (2012), Maru Y (1999), Wan C (2015), Huttlin EL (2017), Luo J (2015), Luo J (2015)	12
CDK7	0	A2M	8	affinity chromatography technology	Varjosalo M (2013)	1
RPA2	0	GTF2H3	2	affinity chromatography technology	Marechal A (2014)	1
GTF2H3	2	GTF2H2	0	pull down, affinity chromatography technology, pull down, biochemical, biochemical, affinity chromatography technology, pull down	Chymkowitch P (2011), Kellenberger E (2005), Jawhari A (2002), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Luo J (2015)	7
CDK2	0	CCT2	1	affinity chromatography technology	Neganova I (2011)	1
CDK2	0	HSP90AB1	2	affinity chromatography technology, affinity chromatography technology	Neganova I (2011), Varjosalo M (2013)	2
GTF2H1	0	5430	0	enzymatic study, biochemical, enzymatic study	Moisan A (2004), Yankulov K (1999), Parada CA (1996)	3
CDK2	0	ESR1	0	enzymatic study, affinity chromatography technology	Zhou W (2014), Zhou W (2014)	2
CDK7	0	SUPT5H	2	enzymatic study, pull down, enzymatic study	Garber ME (2000), Garber ME (2000), Larochelle S (2006)	3
MNAT1	0	GTF2H4	2	biochemical	Havugimana PC (2012)	1
HSP90AA1	7	CDKN1B	1	genetic interference	Srivas R (2016)	1
UBC	7	HNRNPU	12	affinity chromatography technology	Matsumoto M (2005)	1
PRKCI	1	APP	1	pull down	Olah J (2011)	1
CDK2	0	TAF7	0	affinity chromatography technology	Hein MY (2015)	1
CCNB1	3	HIST1H1A	0	enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study	Zhan Q (1999), Sharma SS (2011), Pan ZQ (1993), Yarden RI (2002), Jiang W (1998)	5
BRCA1	7	SUPT5H	2	affinity chromatography technology, affinity chromatography technology	Bennett CB (2008), Bennett CB (2008)	2
CDK9	3	SMAD1	0	enzymatic study	Alarcon C (2009)	1
UBE2D1	0	UBC	7	x-ray crystallography	Bosanac I (2010)	1
POLR2B	3	CTDP1	2	pull down	Amente S (2005)	1
HSP90AA1	7	CDK6	0	affinity chromatography technology	Taipale M (2012)	1
CDK7	0	ERCC2	4	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Reardon JT (1996), Havugimana PC (2012), Varjosalo M (2013), Huttlin EL (2015), Huttlin EL (2017)	5
CDC37	0	AR	3	pull down	Rao J (2001)	1
GTF2H2	0	GTF2H5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Giglia-Mari G (2004), Vermeulen W (2000), Giglia-Mari G (2006), Hein MY (2015), Huttlin EL (2017)	5
TCEA1	0	APP	1	pull down	Olah J (2011)	1
HLA-DQA1	1	CUX1	7	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CDK6	0	HIST1H1A	0	enzymatic study, enzymatic study	Jiang W (1998), Iyer NG (2007)	2
UBC	7	CCNE1	1	affinity chromatography technology	Huang G (2014)	1
MCM7	5	HSP90AB1	2	biochemical	Kristensen AR (2012)	1
CCNA2	1	CDKN1B	1	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joaquin M (2003), Schulman BA (1998), Datta NS (1998), Vlach J (1997), Levkau B (1998), Grimmler M (2007), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	9
CCT2	1	HSP90AA1	7	affinity chromatography technology	Lin YF (2012)	1
CDC37	0	EEF1A2	18	affinity chromatography technology	Li J (2013)	1
AR	3	ERCC3	3	affinity chromatography technology, pull down	Chymkowitch P (2011), Chymkowitch P (2011)	2
ERCC3	3	ERCC5	0	affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Huttlin EL (2017)	2
GTF2E2	2	5430	0	affinity chromatography technology, biochemical	Watanabe T (2003), Wan C (2015)	2
GTF2E1	1	ERCC3	3	pull down, pull down	Maxon ME (1994), Maxon ME (1994)	2
CCNH	3	BRCA1	7	affinity chromatography technology	Moisan A (2004)	1
TP53	0	HNRNPF	5	affinity chromatography technology	Fogeron ML (2013)	1
CCNB1	3	CDKN1B	1	affinity chromatography technology	Hein MY (2015)	1
CDK2	0	MNAT1	0	affinity chromatography technology	Varjosalo M (2013)	1
AR	3	CDK7	0	affinity chromatography technology, pull down, pull down, enzymatic study	Lee DK (2000), Lee DK (2000), Chymkowitch P (2011), Chymkowitch P (2011)	4
CDK7	0	MCM7	5	affinity chromatography technology	Wang Y (2000)	1
ESR1	0	MED21	1	pull down	Kang YK (2002)	1
CDK9	3	CDC37	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Mak AB (2010), Varjosalo M (2013), Huttlin EL (2015), Li J (2013), Huttlin EL (2017)	5
PRKCI	1	CDK7	0	enzymatic study	Pillai P (2011)	1
MED21	1	CDK7	0	affinity chromatography technology	Sune C (1997)	1
RUVBL2	4	HDAC2	1	affinity chromatography technology	Rashid S (2009)	1
FKBP5	0	HSP90AB1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014), Taipale M (2014), Taipale M (2014)	4
ERCC3	3	GTF2H2	0	biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, pull down	Giglia-Mari G (2004), Marinoni JC (1997), Jeronimo C (2007), Humbert S (1994), Humbert S (1994), Wan C (2015), Huttlin EL (2017), Luo J (2015), Luo J (2015)	9
ERCC3	3	GTF2H4	2	biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, pull down	Giglia-Mari G (2004), Marinoni JC (1997), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Luo J (2015), Luo J (2015)	7
CDK1	0	E2F1	0	enzymatic study	Dynlacht BD (1997)	1
ARRB2	5	EEF1A2	18	affinity chromatography technology	Xiao K (2007)	1
TCEA1	0	GTF2H1	0	pull down, pull down, biochemical	Archambault J (1998), Pan G (1997), Yankulov K (1999)	3
UBC	7	CDK7	0	imaging technique	Zhang X (2017)	1
CALCOCO2	0	RPA2	0	two hybrid	Wang J (2011)	1
RPA1	0	HNRNPF	5	affinity chromatography technology	Marechal A (2014)	1
BRCA1	7	CDC37	0	affinity chromatography technology	Ertych N (2016)	1
CCNE1	1	CDK1	0	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Shanahan F (1999), Koff A (1992), Koff A (1992), Horton LE (1997)	4
CDK2	0	HNRNPF	5	affinity chromatography technology	Neganova I (2011)	1
BRCA1	7	CCNE1	1	affinity chromatography technology	Matsuoka S (2007)	1
ESR1	0	RUVBL2	4	affinity chromatography technology	Tarallo R (2011)	1
RPA1	0	HNRNPU	12	affinity chromatography technology	Marechal A (2014)	1
RPA2	0	UBC	7	affinity chromatography technology	Marechal A (2014)	1
CCNA2	1	HDAC2	1	affinity chromatography technology	Hein MY (2015)	1
GTF2H5	0	ERCC3	3	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Giglia-Mari G (2004), Giglia-Mari G (2004), Giglia-Mari G (2006), Hein MY (2015), Huttlin EL (2017), Luo J (2015)	6
UBC	7	RUVBL2	4	affinity chromatography technology	Matsumoto M (2005)	1
GTF2H1	0	ERCC5	0	affinity chromatography technology, pull down	Araujo SJ (2001), Gervais V (2004)	2
CCNE1	1	HIST1H1A	0	enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology	Xu X (1999), Lauper N (1998), Lauper N (1998), Sharma SS (2011), Orend G (1998), Wu G (1997), Horton LE (1997), Higashi H (1996), Ciarallo S (2002), Jiang W (1998), Naderi S (1999), Ghiani C (2001)	12
BRCA1	7	GTF2H4	2	biochemical	Scully R (1997)	1
BRCA1	7	CDK9	3	two hybrid	Woods NT (2012)	1
A2M	8	CDC37	0	two hybrid	Soler-Lopez M (2011)	1
RPA2	0	HNRNPU	12	affinity chromatography technology	Marechal A (2014)	1
CDK7	0	UBE2D1	0	pull down	Chymkowitch P (2011)	1
PRKCI	1	CDC37	0	affinity chromatography technology	Brajenovic M (2004)	1
ESR1	0	POLR2B	3	imaging technique, imaging technique	Zhang H (2006), Zhang H (2006)	2
MCM7	5	APP	1	pull down, pull down	Olah J (2011), Virok DP (2011)	2
CCND2	2	RPA1	0	affinity chromatography technology	Russo LC (2017)	1
BRCA1	7	E2F1	0	affinity chromatography technology	Gorski JJ (2011)	1
3327	0	HSP90AA1	7	biochemical	Havugimana PC (2012)	1
CDK7	0	GTF2H4	2	affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Varjosalo M (2013)	2
GTF2E1	1	APP	1	pull down	Olah J (2011)	1
CDK2	0	RPA1	0	enzymatic study	Pan ZQ (1993)	1
CDK6	0	CCND2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe	Lin J (2001), Sweeney KJ (1997), Varjosalo M (2013), Ivanov AA (2017)	4
CUX1	7	CDK7	0	pull down	Santaguida M (2001)	1
CDK7	0	CCNE1	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CDK6	0	730211	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
RPA3	2	GTF2H3	2	affinity chromatography technology	Marechal A (2014)	1
AR	3	GTF2H2	0	pull down	Chymkowitch P (2011)	1
TP53	0	HNRNPU	12	affinity chromatography technology	Fogeron ML (2013)	1
RPA2	0	CDK7	0	affinity chromatography technology, biochemical	Marechal A (2014), Wan C (2015)	2
TP53	0	CCNH	3	far western blotting, affinity chromatography technology	Schneider E (1998), Schneider E (1998)	2
TP53	0	ESR1	0	pull down, affinity chromatography technology, affinity chromatography technology	Liu G (2000), Duong V (2007), Saxena R (2016)	3
ARRB2	5	UBC	7	affinity chromatography technology, fluorescent resonance energy transfe	Xiao K (2007), Dalrymple MB (2011)	2
CCNH	3	CDK2	0	enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Xu X (1999), Higashi H (1996), Garrett S (2001), Lolli G (2004), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	7
RPA3	2	CCAR2	9	affinity chromatography technology	Marechal A (2014)	1
CCNA2	1	HIST1H1A	0	affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study	Sharma SS (2011), Wu G (1997), Horton LE (1997), Higashi H (1996), Liu S (2009), Ciarallo S (2002), Jiang W (1998)	7
CDK9	3	3323	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CCNH	3	MCM7	5	affinity chromatography technology	Wang Y (2000)	1
MTA1	3	ESR1	0	affinity chromatography technology, pull down, pull down, pull down, pull down, pull down	Kumar R (2002), Kumar R (2002), Kumar R (2002), Mazumdar A (2001), Singh RR (2006), Mishra SK (2003)	6
5430	0	ERCC3	3	affinity chromatography technology	Fousteri M (2006)	1
TCEA1	0	GTF2E1	1	pull down, biochemical	Pan G (1997), Yankulov K (1999)	2
CDK7	0	TBC1D32	3	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
UBC	7	HSP90AB1	2	affinity chromatography technology	Bish RA (2007)	1
SUPT5H	2	5430	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology	Kim JB (1999), Wada T (1998), Kang H (2011), Kang H (2011), Havugimana PC (2012), Yamaguchi Y (2002), Yamaguchi Y (1999), Yamaguchi Y (1999), Bennett CB (2008), Wan C (2015), Hein MY (2015)	11
RPA1	0	UBC	7	affinity chromatography technology	Marechal A (2014)	1
GTF2H5	0	CCNH	3	affinity chromatography technology	Hein MY (2015)	1
SMAD1	0	AR	3	affinity chromatography technology, affinity chromatography technology, protein complementation assay, imaging technique, affinity chromatography technology	Qiu T (2007), Qiu T (2007), Qiu T (2007), Qiu T (2007), Li Y (2013)	5
CDK7	0	TP53	0	enzymatic study, affinity chromatography technology, enzymatic study, pull down	Ko LJ (1997), Schneider E (1998), Lu H (1997), Lu H (1997)	4
CDK7	0	CDKN1B	1	affinity chromatography technology	Huttlin EL (2017)	1
CDK1	0	GTF2E1	1	genetic interference	Horlbeck MA (2018)	1
GTF2H5	0	ERCC5	0	affinity chromatography technology	Hein MY (2015)	1
E2F1	0	ESR1	0	affinity chromatography technology, affinity chromatography technology	Liu W (2012), Liu W (2012)	2
CDK7	0	ANXA2	0	affinity chromatography technology	Reardon JT (1996)	1
CDK7	0	664618	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CDK7	0	ATP2B4	5	affinity chromatography technology	Varjosalo M (2013)	1
UVSSA	5	CDK7	0	affinity chromatography technology	Fei J (2012)	1
5430	0	MCM7	5	affinity chromatography technology, biochemical	Kang H (2011), Yankulov K (1999)	2
HSP90AA1	7	SUPT5H	2	biochemical	Havugimana PC (2012)	1
CCND2	2	CDKN1B	1	two hybrid, affinity chromatography technology, affinity chromatography technology	Rual JF (2005), Huttlin EL (2015), Huttlin EL (2017)	3
TP53	0	ERCC2	4	pull down, far western blotting, pull down	Wang XW (1995), Leveillard T (1996), Leveillard T (1996)	3
CDC37	0	CDK7	0	pull down, affinity chromatography technology	Stepanova L (1996), Huttlin EL (2015)	2
CCNE1	1	CDK6	0	affinity chromatography technology, fluorescent resonance energy transfe	Datta NS (1998), Ivanov AA (2017)	2
ZBED1	0	CDK7	0	affinity chromatography technology	Huttlin EL (2017)	1
SRPK1	2	CDK7	0	enzymatic study	Varjosalo M (2013)	1
CCND2	2	HIST1H1A	0	enzymatic study, enzymatic study	Sweeney KJ (1997), Jiang W (1998)	2
SRPK2	1	APP	1	pull down	Olah J (2011)	1
CCNH	3	ESR1	0	affinity chromatography technology	Talukder AH (2003)	1
RPA3	2	RPA1	0	biochemical, x-ray crystallography, affinity chromatography technology, biochemical, two hybrid, biochemical, affinity chromatography technology, affinity chromatography technology	Bochkareva E (1998), Bochkareva E (2002), Gong Z (2011), Havugimana PC (2012), Du Y (2009), Wan C (2015), Hein MY (2015), Elia AE (2015)	8
SMAD1	0	APP	1	pull down	Olah J (2011)	1
BRCA1	7	TP53	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, biochemical, pull down, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Abramovitch S (2004), Ouchi T (1998), Dong Y (2003), Dong Y (2003), Chai YL (1999), Chai YL (1999), Zhang H (1998), Dong Y (2003), Chen Y (2006), Quaresima B (2006), Zhang H (1998), Zhang H (1998), Mark WY (2005), Jin S (2009), Jiang J (2011), Rasti M (2015), Rasti M (2015)	17
RPA3	2	UBC	7	affinity chromatography technology	Marechal A (2014)	1
TP53	0	MNAT1	0	pull down, affinity chromatography technology	Ko LJ (1997), Ko LJ (1997)	2
CDK7	0	CCT2	1	affinity chromatography technology	Jeronimo C (2007)	1
UBC	7	BRCA1	7	pull down, enzymatic study	Sobhian B (2007), Zhao GY (2007)	2
HSP90AA1	7	AR	3	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Veldscholte J (1992), Nemoto T (1992), Zoubeidi A (2007), DaSilva J (2009), Chymkowitch P (2011), Gibbs A (2009), Wolf SS (2007), Luo J (2015), Kwegyir-Afful AK (2015), Ni L (2010), McClurg UL (2016)	11
HSP90AB1	2	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Cheng MB (2010), Gano JJ (2010), Skarra DV (2011), Kristensen AR (2012), Taipale M (2014), Taipale M (2014), Wan C (2015), Hein MY (2015)	8
ARRB2	5	HDAC2	1	affinity chromatography technology	Xiao K (2007)	1
ARRB2	5	RPA1	0	affinity chromatography technology	Xiao K (2007)	1
GTF2H2	0	CDK7	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vermeulen W (2000), Jeronimo C (2007), Varjosalo M (2013)	3
E2F1	0	CDK2	0	pull down, enzymatic study, affinity chromatography technology, enzymatic study	Xu M (1994), Dynlacht BD (1997), Dynlacht BD (1997), Ohta T (2001)	4
CDK7	0	ERCC5	0	affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Varjosalo M (2013)	2
CDK7	0	MPLKIP	1	affinity chromatography technology	Huttlin EL (2015)	1
A2M	8	APP	1	two hybrid	Soler-Lopez M (2011)	1
RPA3	2	MNAT1	0	affinity chromatography technology	Marechal A (2014)	1
CDKN1B	1	HIST1H1A	0	enzymatic study	Ciarallo S (2002)	1
CDK2	0	MCM7	5	affinity chromatography technology	Neganova I (2011)	1
SRPK1	2	SRPK2	1	biochemical	Edmond V (2011)	1
CDK7	0	CTDP1	2	enzymatic study	Alarcon C (2009)	1
CDK1	0	TP53	0	enzymatic study, affinity chromatography technology	Luciani MG (2000), Ababneh M (2001)	2
ARRB2	5	CDK7	0	affinity chromatography technology	Xiao K (2007)	1
CDK9	3	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Mak AB (2010), Taipale M (2012), Varjosalo M (2013), Huttlin EL (2015), Huttlin EL (2017)	5
AR	3	TP53	0	genetic interference	Shenk JL (2001)	1
5430	0	GTF2E1	1	biochemical, pull down, pull down	Scully R (1997), Scully R (1997), Maxon ME (1994)	3
HNRNPU	12	5430	0	affinity chromatography technology, imaging technique, affinity chromatography technology, pull down, affinity chromatography technology, pull down	Kim MK (1999), Vizlin-Hodzic D (2011), Kukalev A (2005), Obrdlik A (2008), Obrdlik A (2008), Obrdlik A (2008)	6
HSP90AB1	2	CDC37	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Erazo T (2013), Erazo T (2013), Taipale M (2014), Taipale M (2014), Taipale M (2014), Taipale M (2014), Hein MY (2015), Li J (2013), Karras GI (2017), Synoradzki K (2015)	10
CDK7	0	SMAD1	0	enzymatic study	Alarcon C (2009)	1
CCNH	3	5430	0	enzymatic study, biochemical, enzymatic study	Chen R (2004), Nekhai S (1997), Lolli G (2004)	3
UBC	7	HSD17B4	0	affinity chromatography technology	Matsumoto M (2005)	1
CDK9	3	664618	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
TP53	0	SMAD1	0	affinity chromatography technology, affinity chromatography technology	Chau JF (2012), Chau JF (2012)	2
AR	3	ERCC2	4	pull down	Chymkowitch P (2011)	1
AR	3	FKBP5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Schuelke JP (2010), Ni L (2010), Luo K (2017)	3
GTF2H5	0	GTF2H4	2	affinity chromatography technology, affinity chromatography technology, pull down	Hein MY (2015), Huttlin EL (2017), Luo J (2015)	3
5430	0	ERCC5	0	affinity chromatography technology, affinity chromatography technology, pull down	Fousteri M (2006), Sarker AH (2005), Sarker AH (2005)	3
CDK7	0	GTF2E2	2	enzymatic study	Larochelle S (2012)	1
TP53	0	HDAC2	1	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Li P (2010), Insinga A (2004), Sun JM (2007), Tian B (2011), Adenuga D (2010), Brandl A (2012)	6
E2F1	0	ERCC3	3	pull down	Pearson A (1997)	1
CDK9	3	730211	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
SRPK1	2	APP	1	pull down	Olah J (2011)	1
CDK1	0	CUX1	7	enzymatic study	Santaguida M (2001)	1
CDK1	0	CDK7	0	enzymatic study	Garrett S (2001)	1
RPA3	2	HNRNPF	5	affinity chromatography technology	Marechal A (2014)	1
CDK7	0	CDK6	0	enzymatic study	Aprelikova O (1995)	1
CDK7	0	CDK7	0	affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology	Chen D (1999), Garrett S (2001), Lu H (1997), Akoulitchev S (2000), Varjosalo M (2013)	5
CCNB1	3	CDK1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, biochemical, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shanahan F (1999), Yang Q (2000), Pines J (1989), Kong M (2000), Amador V (2007), Paulsen MT (2006), Niida H (2005), Pereg Y (2010), Tamura D (2010), Kiviharju-af Haellstroem TM (2007), Pan ZQ (1993), Pan ZQ (1993), Pan ZQ (1993), van Zon W (2010), Desai D (1995), Vazquez-Novelle MD (2010), Smith EM (2008), Poon RY (1996), OConnor PM (1993), Fosbrink M (2009), Linares JF (2011), Varjosalo M (2013), Felzien LK (1998), Toby GG (2003), So J (2015), Huttlin EL (2015), Wan C (2015), Jenkins RH (2014), Hein MY (2015), Hein MY (2015), Voets E (2015), Lin Z (2015), Lin Z (2015), Huttlin EL (2017)	34
ESR1	0	5430	0	affinity chromatography technology, imaging technique, imaging technique, pull down	Ambrosino C (2010), Zhang H (2006), Zhang H (2006), Nalvarte I (2010)	4
MNAT1	0	SUPT5H	2	enzymatic study	Larochelle S (2006)	1
CCNA2	1	TP53	0	pull down	Luciani MG (2000)	1
ESR1	0	CCT2	1	pull down, affinity chromatography technology	Nalvarte I (2010), Han SJ (2016)	2
CDK7	0	CCND2	2	enzymatic study	Denicourt C (2008)	1
CCNB1	3	RPA1	0	enzymatic study	Pan ZQ (1993)	1
CCNA2	1	CDK2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography, x-ray crystallography, x-ray crystallography, x-ray crystallography, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, x-ray crystallography, x-ray crystallography, x-ray crystallography, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Henneke G (2003), Naderi S (2005), Varshochi R (2005), Di Fiore B (2010), Mateo F (2009), Abbas T (2007), Schulman BA (1998), Datta NS (1998), Wu G (1997), Sebastian B (1993), Liu S (2009), Ciarallo S (2002), Wolthuis R (2008), Vicent GP (2011), Zhang H (1995), Sayle KL (2003), Jeffrey PD (1995), Davies TG (2001), Cook A (2002), Pevarello P (2006), Levkau B (1998), Poon RY (1996), OConnor PM (1993), Davies TG (2002), Kontopidis G (2003), Andrews MJ (2004), Pevarello P (2004), Pevarello P (2005), Varjosalo M (2013), Varjosalo M (2013), Kikuchi R (2014), Kikuchi R (2014), Mateo F (2009), So J (2015), Okamoto K (2002), Song MS (2011), Huttlin EL (2015), Di Fiore B (2015), Pan ZQ (1993), Pan ZQ (1993), Hein MY (2015), Hein MY (2015), Huttlin EL (2017)	43
ERCC2	4	GTF2H2	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down	Coin F (1998), Coin F (1998), Vermeulen W (2000), Dubaele S (2003), Luo J (2015)	5
ERCC3	3	MNAT1	0	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Giglia-Mari G (2004), Jeronimo C (2007), Drapkin R (1996), Drapkin R (1996), Huttlin EL (2017), Luo J (2015), Luo J (2015)	7
ESR1	0	FKBP5	0	pull down, affinity chromatography technology	Nair SC (1996), Dhamad AE (2016)	2
RPA2	0	EEF1A2	18	affinity chromatography technology	Marechal A (2014)	1
GTF2H5	0	GTF2H3	2	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
CDK2	0	BRCA1	7	affinity chromatography technology, pull down, affinity chromatography technology, pull down, enzymatic study	Ruffner H (1999), Ruffner H (1999), Ruffner H (1999), Wang H (1997), Chen Y (1996)	5
CCNH	3	ERCC2	4	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Drapkin R (1996), Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017)	4
MED21	1	GTF2H4	2	affinity chromatography technology, biochemical	Scully R (1997), Scully R (1997)	2
BRCA1	7	ESR1	0	imaging technique, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down	Zheng L (2001), Fan S (2001), Fan S (2001), Kawai H (2002), Fan S (2002), Fan S (2002), Nakuci E (2006), Wang C (2005), Wang C (2005), Dizin E (2010), Dizin E (2010), Ma Y (2010), Ma Y (2010), Fan S (2001), Ma YX (2005), Ma YX (2005), Ma YX (2005), Ma Y (2007), Ma Y (2007), Kawai H (2002), Jung YS (2014), Kawai H (2002), Kawai H (2002)	23
MNAT1	0	MCM7	5	two hybrid, pull down, affinity chromatography technology	Wang Y (2000), Wang Y (2000), Wang Y (2000)	3
GTF2E2	2	EEF1A2	18	affinity chromatography technology	Huttlin EL (2017)	1
5430	0	MED21	1	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Scully R (1997), Scully R (1997), Cho H (1998), Cho H (1998), Sune C (1997), Huttlin EL (2017)	6
CDC37	0	CDK1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014), Garcia-Morales P (2007)	3
BRCA1	7	UBE2D1	0	pull down, pull down, pull down, pull down, pull down, pull down, two hybrid, x-ray crystallography, pull down, two hybrid, pull down, pull down, pull down, pull down	Mallery DL (2002), Brzovic PS (2003), Nishikawa H (2004), Dong Y (2003), Wu-Baer F (2003), Hashizume R (2001), Christensen DE (2009), Christensen DE (2009), Christensen DE (2009), Morris JR (2006), Vandenberg CJ (2003), Morris JR (2006), Nhukeaw T (2014), Thakar A (2010)	14
GTF2E1	1	GTF2H4	2	pull down, biochemical	Scully R (1997), Scully R (1997)	2
RPA3	2	EEF1A2	18	affinity chromatography technology	Marechal A (2014)	1
FKBP5	0	HSP90AA1	7	affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Nair SC (1997), Nair SC (1997), Li J (2011), Schuelke JP (2010), Gano JJ (2010), Skarra DV (2011), Horibe T (2011), Kristensen AR (2012), Taipale M (2014), Taipale M (2014), Graumann K (2000), Ni L (2010), Luo K (2017)	13
RPA2	0	APP	1	pull down	Olah J (2011)	1
CDK9	3	CTDP1	2	enzymatic study, enzymatic study, enzymatic study	Alarcon C (2009), Yang Z (2005), Michels AA (2004)	3
RPA1	0	CDK7	0	affinity chromatography technology	Marechal A (2014)	1
SRPK2	1	ERCC3	3	enzymatic study	Varjosalo M (2013)	1
RPA3	2	CCNH	3	affinity chromatography technology	Marechal A (2014)	1
RPA1	0	CCAR2	9	affinity chromatography technology	Marechal A (2014)	1
HSP90AA1	7	CDC37	0	x-ray crystallography, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology	Roe SM (2004), Silverstein AM (1998), Mollapour M (2010), Basso AD (2002), Tsutsumi S (2012), De Nardo D (2005), Sarkar S (2012), Gano JJ (2010), Taipale M (2012), Skarra DV (2011), Zhang H (2004), Taipale M (2014), Taipale M (2014), Mollapour M (2014), Hein MY (2015), Hein MY (2015), Li J (2013), Woodford MR (2016), Shao J (2003), Scholz GM (2001), Sun L (2012), Sun L (2012), Woodford MR (2016), Synoradzki K (2015)	24
CCNH	3	ERCC5	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
RPA1	0	GTF2H3	2	affinity chromatography technology	Marechal A (2014)	1
CDK1	0	RPA1	0	enzymatic study, enzymatic study	Pan ZQ (1993), Pan ZQ (1993)	2
GTF2H1	0	ESR1	0	enzymatic study, pull down	Chen D (2000), Chen D (2000)	2
PRKCI	1	MBP	0	enzymatic study	Pillai P (2011)	1
RPA2	0	ANXA2	0	affinity chromatography technology	Marechal A (2014)	1
UBC	7	CCT2	1	affinity chromatography technology	Bish RA (2007)	1
CDK1	0	CDKN1B	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Radu M (2008), Varjosalo M (2013), Huttlin EL (2015), Huttlin EL (2017)	4
CCNH	3	HNRNPF	5	biochemical	Wan C (2015)	1
CDK7	0	5430	0	enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, biochemical, enzymatic study, enzymatic study, enzymatic study	Drapkin R (1996), Gegonne A (2008), Moisan A (2004), Pinhero R (2004), Ramanathan Y (2001), Larochelle S (2012), Larochelle S (2006), Nekhai S (1997), Pinhero R (2004), Rovnak J (2012), Lolli G (2004)	11
5430	0	CDK2	0	biochemical	Nekhai S (1997)	1
CDK9	3	AR	3	affinity chromatography technology, pull down	Lee DK (2001), Lee DK (2001)	2
CDK2	0	ANXA2	0	affinity chromatography technology	Neganova I (2011)	1
ERCC2	4	730394	0	two hybrid	Rolland T (2014)	1
CDK7	0	RUVBL2	4	affinity chromatography technology	Jeronimo C (2007)	1
RPA3	2	ANXA2	0	affinity chromatography technology	Marechal A (2014)	1
SRPK2	1	CDK7	0	enzymatic study	Varjosalo M (2013)	1
CDK2	0	HNRNPU	12	affinity chromatography technology	Neganova I (2011)	1
TCEA1	0	POLR2B	3	affinity chromatography technology	Jeronimo C (2007)	1
TP53	0	MED21	1	pull down	Gu W (1999)	1
CCNH	3	CALCOCO2	0	two hybrid	Rolland T (2014)	1
CDK2	0	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology	Neganova I (2011), Varjosalo M (2013)	2
CDK7	0	GTF2E1	1	enzymatic study, enzymatic study	Moisan A (2004), Larochelle S (2012)	2
MCM7	5	RPA1	0	two hybrid, two hybrid	Kneissl M (2003), Kneissl M (2003)	2
CCND2	2	CCNE1	1	fluorescent resonance energy transfe	Ivanov AA (2017)	1
GTF2H3	2	GTF2H4	2	pull down, biochemical, biochemical, affinity chromatography technology, pull down	Jawhari A (2002), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Luo J (2015)	5
SMAD1	0	UBC	7	two hybrid	Guo X (2001)	1
TCEA1	0	CTDP1	2	pull down	Archambault J (1998)	1
GTF2H2	0	GTF2H1	0	affinity chromatography technology, biochemical, affinity chromatography technology, two hybrid, biochemical, pull down	Vermeulen W (2000), Humbert S (1994), Humbert S (1994), Wang J (2011), Wan C (2015), Luo J (2015)	6
730394	0	GTF2H5	0	affinity chromatography technology	Huttlin EL (2017)	1
730394	0	GTF2H1	0	affinity chromatography technology, biochemical, affinity chromatography technology	Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	3
CDK7	0	MBP	0	enzymatic study	Pinhero R (2004)	1
CDK7	0	CCAR2	9	affinity chromatography technology	Jeronimo C (2007)	1
5430	0	POLR2B	3	pull down, biochemical, biochemical	Knuesel MT (2009), Havugimana PC (2012), Wan C (2015)	3
CCNE1	1	CDK2	0	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	McKenzie PP (2003), Shanahan F (1999), Koff A (1992), Koff A (1992), Mayer C (2004), Connor MK (2003), Boudrez A (2000), Varshochi R (2005), Jeong JH (2010), Bustany S (2011), Yeh ES (2006), Hui S (2011), Kim J (2007), Kiviharju-af Haellstroem TM (2007), Abbas T (2007), Nishimura T (2005), Matsumoto Y (2004), Harwell RM (2004), Harwell RM (2004), Peiretti A (2003), Peiretti A (2003), Kim YB (2000), Manenti S (1999), Datta NS (1998), Sheaff RJ (1997), Higashi H (1996), Higashi H (1996), Musgrove EA (1996), Vlach J (1996), Grim JE (2008), Liu S (2009), Ciarallo S (2002), Desai D (1995), Baydoun HH (2010), Baydoun HH (2010), Chu I (2007), Chu I (2007), Levkau B (1998), Poon RY (1996), Zhao J (1998), Zhao J (1998), Larrea MD (2009), Varjosalo M (2013), Varjosalo M (2013), Chan HM (2001), So J (2015), Ungermannova D (2005), Song MS (2011), Huttlin EL (2015), Hein MY (2015), Lin CH (2015), Lin CH (2015), Davis RJ (2017), Huttlin EL (2017)	54
BRCA1	7	HSP90AB1	2	affinity chromatography technology	Ertych N (2016)	1
RPA2	0	MNAT1	0	affinity chromatography technology	Marechal A (2014)	1
GTF2H2	0	CCNH	3	affinity chromatography technology	Vermeulen W (2000)	1
UBC	7	HNRNPF	5	affinity chromatography technology	Matsumoto M (2005)	1
GTF2H3	2	ERCC2	4	pull down	Chymkowitch P (2011)	1
GTF2E2	2	HSP90AB1	2	affinity chromatography technology	Jeronimo C (2007)	1