PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000340384	[[140135664, 140135869], [140136172, 140136281], [140136362, 140136473], [140136947, 140138159]]	[[140135812, 140135869], [140136172, 140136281], [140136362, 140136473], [140136947, 140138008]]
ENST00000604929	[[140135739, 140135869], [140136172, 140136281], [140136362, 140138158]]	None
NM_006088	[[140135710, 140135869], [140136172, 140136281], [140136362, 140136473], [140136947, 140138159]]	[[140135812, 140135869], [140136172, 140136281], [140136362, 140136473], [140136947, 140138008]]

Promoter

Chrom	Start	End	Description
chr9	140135729	140135748	CAGE_peak_1_at_TUBB4B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I137243	137243489	137245047	1.02	[{'connected_gene': 'INPP5E', 'score': 20.81}, {'connected_gene': 'ANAPC2', 'score': 20.65}, {'connected_gene': 'DPH7', 'score': 17.08}, {'connected_gene': 'SNAPC4', 'score': 14.7}, {'connected_gene': 'SNHG7', 'score': 13.94}, {'connected_gene': 'FAM166A', 'score': 12.03}, {'connected_gene': 'EXD3', 'score': 12.0}, {'connected_gene': 'ZMYND19', 'score': 10.71}, {'connected_gene': 'SDCCAG3', 'score': 10.26}, {'connected_gene': 'ARRDC1-AS1', 'score': 9.89}, {'connected_gene': 'LOC651337', 'score': 9.86}, {'connected_gene': 'UAP1L1', 'score': 4.69}, {'connected_gene': 'TUBB4B', 'score': 0.77}, {'connected_gene': 'STPG3', 'score': 0.44}]
chr9	GH09I137247	137247740	137247799	0.68	[{'connected_gene': 'FAM166A', 'score': 550.77}, {'connected_gene': 'STPG3', 'score': 0.77}, {'connected_gene': 'TUBB4B', 'score': 0.44}]
chr9	GH09I137248	137248618	137248839	0.22	[{'connected_gene': 'LCNL1', 'score': 2.85}, {'connected_gene': 'ABCA2', 'score': 2.64}, {'connected_gene': 'SLC34A3', 'score': 2.32}, {'connected_gene': 'STPG3', 'score': 0.77}, {'connected_gene': 'FAM166A', 'score': 0.77}, {'connected_gene': 'TUBB4B', 'score': 0.44}]
chr9	GH09I137265	137265665	137267574	0.49	[{'connected_gene': 'NELFB', 'score': 23.82}, {'connected_gene': 'TUBB4B', 'score': 13.39}, {'connected_gene': 'SLC34A3', 'score': 13.35}, {'connected_gene': 'NOXA1', 'score': 11.63}, {'connected_gene': 'EXD3', 'score': 11.32}, {'connected_gene': 'TOR4A', 'score': 0.39}]
chr9	GH09I137233	137233373	137243238	2.65	[{'connected_gene': 'TUBB4B', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 90.39}, {'connected_gene': 'SDCCAG3', 'score': 59.97}, {'connected_gene': 'ANAPC2', 'score': 50.98}, {'connected_gene': 'NDOR1', 'score': 50.56}, {'connected_gene': 'DPH7', 'score': 40.53}, {'connected_gene': 'INPP5E', 'score': 40.02}, {'connected_gene': 'LOC651337', 'score': 36.84}, {'connected_gene': 'MAN1B1', 'score': 26.89}, {'connected_gene': 'SNHG7', 'score': 26.01}, {'connected_gene': 'SEC16A', 'score': 26.0}, {'connected_gene': 'EXD3', 'score': 13.5}, {'connected_gene': 'TRAF2', 'score': 10.75}, {'connected_gene': 'TMEM203', 'score': 10.34}, {'connected_gene': 'RABL6', 'score': 10.31}, {'connected_gene': 'NELFB', 'score': 8.98}, {'connected_gene': 'LCN15', 'score': 8.35}, {'connected_gene': 'ABCA2', 'score': 7.81}, {'connected_gene': 'TOR4A', 'score': 6.36}, {'connected_gene': 'UAP1L1', 'score': 6.25}, {'connected_gene': 'RNF224', 'score': 5.79}, {'connected_gene': 'CYSRT1', 'score': 5.23}, {'connected_gene': 'MRPL41', 'score': 5.19}, {'connected_gene': 'ZMYND19', 'score': 4.53}, {'connected_gene': 'PNPLA7', 'score': 3.77}, {'connected_gene': 'TPRN', 'score': 3.5}, {'connected_gene': 'LCNL1', 'score': 3.04}, {'connected_gene': 'ENTPD8', 'score': 2.25}, {'connected_gene': 'RNF208', 'score': 1.83}, {'connected_gene': 'DPP7', 'score': 1.81}, {'connected_gene': 'GRIN1', 'score': 1.71}, {'connected_gene': 'AJM1', 'score': 1.66}, {'connected_gene': 'NPDC1', 'score': 1.59}, {'connected_gene': 'NOXA1', 'score': 1.58}, {'connected_gene': 'PTGDS', 'score': 1.41}, {'connected_gene': 'ENTPD2', 'score': 1.26}, {'connected_gene': 'NSMF', 'score': 1.23}, {'connected_gene': 'SLC34A3', 'score': 0.44}]