PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376288	[[31082866, 31085306], [31088111, 31088223]]	[[31083801, 31085306], [31088111, 31088196]]
NM_001264	[[31082864, 31085306], [31088111, 31088252]]	[[31083801, 31085306], [31088111, 31088196]]
NM_001264	[[2597568, 2600007], [2602816, 2602957]]	[[2598505, 2600007], [2602816, 2602901]]
NM_001264	[[2380036, 2382475], [2385279, 2385420]]	[[2380970, 2382475], [2385279, 2385364]]
NM_001264	[[2464789, 2467228], [2470032, 2470173]]	[[2465723, 2467228], [2470032, 2470117]]
NM_001264	[[2378682, 2381121], [2383932, 2384073]]	[[2379616, 2381121], [2383932, 2384017]]
NM_001264	[[2431221, 2433660], [2436464, 2436605]]	[[2432155, 2433660], [2436464, 2436549]]

Promoter

Chrom	Start	End	Description
chr6	31088214	31088228	CAGE_peak_1_at_CDSN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I031144	31144180	31145414	0.2	[{'connected_gene': 'CCHCR1', 'score': 32.5}, {'connected_gene': 'PSORS1C3', 'score': 20.2}, {'connected_gene': 'CDSN', 'score': 12.75}, {'connected_gene': 'PSORS1C1', 'score': 12.7}, {'connected_gene': 'C6orf15', 'score': 11.99}, {'connected_gene': 'ENSG00000272501', 'score': 11.78}, {'connected_gene': 'POU5F1', 'score': 11.78}, {'connected_gene': 'DPCR1', 'score': 10.43}, {'connected_gene': 'HCG22', 'score': 8.7}, {'connected_gene': 'MICA-AS1', 'score': 7.24}, {'connected_gene': 'TCF19', 'score': 4.67}, {'connected_gene': 'POLR2LP1', 'score': 0.77}]
chr6	GH06I031122	31122034	31123633	1.05	[{'connected_gene': 'HCG18', 'score': 30.86}, {'connected_gene': 'PSORS1C1', 'score': 27.73}, {'connected_gene': 'HCG22', 'score': 17.26}, {'connected_gene': 'PSORS1C2', 'score': 14.27}, {'connected_gene': 'MDC1', 'score': 12.77}, {'connected_gene': 'MICB', 'score': 11.69}, {'connected_gene': 'LSM2', 'score': 10.88}, {'connected_gene': 'GTF2H4', 'score': 10.59}, {'connected_gene': 'DXO', 'score': 10.18}, {'connected_gene': 'C6orf48', 'score': 9.83}, {'connected_gene': 'MICA-AS1', 'score': 8.44}, {'connected_gene': 'POU5F1', 'score': 6.38}, {'connected_gene': 'TCF19', 'score': 4.69}, {'connected_gene': 'CDSN', 'score': 0.77}]
chr6	GH06I031072	31072201	31072933	0.94	[{'connected_gene': 'HCG22', 'score': 25.48}, {'connected_gene': 'C6orf15', 'score': 12.0}, {'connected_gene': 'PSORS1C1', 'score': 11.99}, {'connected_gene': 'CDSN', 'score': 11.83}, {'connected_gene': 'VARS2', 'score': 11.57}, {'connected_gene': 'GTF2H4', 'score': 11.57}, {'connected_gene': 'DDR1', 'score': 11.56}, {'connected_gene': 'HCG21', 'score': 11.37}, {'connected_gene': 'DDR1-AS1', 'score': 11.29}, {'connected_gene': 'DPCR1', 'score': 11.15}, {'connected_gene': 'FLOT1', 'score': 10.53}, {'connected_gene': 'IER3', 'score': 10.53}, {'connected_gene': 'POU5F1', 'score': 10.19}, {'connected_gene': 'ENSG00000272501', 'score': 7.34}, {'connected_gene': 'RNU6-1133P', 'score': 0.39}, {'connected_gene': 'GC06P031584', 'score': 0.37}]
chr6	GH06I031079	31079601	31080097	0.95	[{'connected_gene': 'HCG22', 'score': 25.42}, {'connected_gene': 'PSORS1C2', 'score': 12.74}, {'connected_gene': 'PSORS1C1', 'score': 12.02}, {'connected_gene': 'C6orf15', 'score': 12.02}, {'connected_gene': 'CDSN', 'score': 11.84}, {'connected_gene': 'VARS2', 'score': 11.57}, {'connected_gene': 'GTF2H4', 'score': 11.57}, {'connected_gene': 'DDR1', 'score': 11.56}, {'connected_gene': 'DDR1-AS1', 'score': 11.29}, {'connected_gene': 'DPCR1', 'score': 11.14}, {'connected_gene': 'HCG21', 'score': 11.12}, {'connected_gene': 'POU5F1', 'score': 10.19}, {'connected_gene': 'TCF19', 'score': 5.59}, {'connected_gene': 'RNU6-1133P', 'score': 0.77}, {'connected_gene': 'GC06P031584', 'score': 0.34}]
chr6	GH06I031068	31068964	31069153	0.81	[{'connected_gene': 'HCG22', 'score': 28.88}, {'connected_gene': 'PSORS1C1', 'score': 11.53}, {'connected_gene': 'CDSN', 'score': 11.52}, {'connected_gene': 'VARS2', 'score': 11.46}, {'connected_gene': 'GTF2H4', 'score': 11.46}, {'connected_gene': 'DDR1', 'score': 11.45}, {'connected_gene': 'C6orf15', 'score': 11.44}, {'connected_gene': 'DDR1-AS1', 'score': 11.43}, {'connected_gene': 'HCG21', 'score': 11.42}, {'connected_gene': 'DPCR1', 'score': 11.41}, {'connected_gene': 'RNU6-1133P', 'score': 0.39}, {'connected_gene': 'GC06P031584', 'score': 0.39}]
chr6	GH06I031070	31070416	31071413	0.86	[{'connected_gene': 'HCG22', 'score': 26.03}, {'connected_gene': 'PSORS1C1', 'score': 11.55}, {'connected_gene': 'CDSN', 'score': 11.53}, {'connected_gene': 'VARS2', 'score': 11.46}, {'connected_gene': 'GTF2H4', 'score': 11.46}, {'connected_gene': 'DDR1', 'score': 11.45}, {'connected_gene': 'C6orf15', 'score': 11.44}, {'connected_gene': 'DDR1-AS1', 'score': 11.43}, {'connected_gene': 'HCG21', 'score': 11.42}, {'connected_gene': 'DPCR1', 'score': 11.41}, {'connected_gene': 'FLOT1', 'score': 10.4}, {'connected_gene': 'IER3', 'score': 10.4}, {'connected_gene': 'SKIV2L', 'score': 6.93}, {'connected_gene': 'ENSG00000271581', 'score': 5.39}, {'connected_gene': 'POU5F1', 'score': 5.13}, {'connected_gene': 'RNU6-1133P', 'score': 0.39}, {'connected_gene': 'GC06P031584', 'score': 0.39}]
chr6	GH06I031139	31139056	31139115	0.61	[{'connected_gene': 'PSORS1C2', 'score': 550.77}, {'connected_gene': 'POLR2LP1', 'score': 550.77}, {'connected_gene': 'CDSN', 'score': 0.37}, {'connected_gene': 'PSORS1C1', 'score': 0.34}]
chr6	GH06I031137	31137402	31138000	1.16	[{'connected_gene': 'PSORS1C2', 'score': 579.15}, {'connected_gene': 'PSORS1C1', 'score': 23.54}, {'connected_gene': 'HCG18', 'score': 16.55}, {'connected_gene': 'HCG27', 'score': 12.09}, {'connected_gene': 'ZBTB12', 'score': 11.97}, {'connected_gene': 'RPP21', 'score': 10.93}, {'connected_gene': 'PRR3', 'score': 10.34}, {'connected_gene': 'GTF2H4', 'score': 9.79}, {'connected_gene': 'DXO', 'score': 9.73}, {'connected_gene': 'HLA-C', 'score': 7.77}, {'connected_gene': 'CDSN', 'score': 0.37}]
chr6	GH06I031128	31128204	31128353	0.63	[{'connected_gene': 'PSORS1C2', 'score': 10.5}, {'connected_gene': 'CDSN', 'score': 0.44}, {'connected_gene': 'PSORS1C1', 'score': 0.39}]
chr6	GH06I031113	31113678	31116136	1.49	[{'connected_gene': 'PSORS1C1', 'score': 604.32}, {'connected_gene': 'HCG22', 'score': 25.69}, {'connected_gene': 'MICB', 'score': 10.95}, {'connected_gene': 'ENSG00000272501', 'score': 10.28}, {'connected_gene': 'POU5F1', 'score': 10.08}, {'connected_gene': 'HLA-C', 'score': 8.58}, {'connected_gene': 'TRIM10', 'score': 5.27}, {'connected_gene': 'TCF19', 'score': 4.68}, {'connected_gene': 'CDSN', 'score': 0.44}]
chr6	GH06I031124	31124893	31127492	0.89	[{'connected_gene': 'PSORS1C1', 'score': 41.67}, {'connected_gene': 'PSORS1C2', 'score': 29.84}, {'connected_gene': 'CCHCR1', 'score': 21.64}, {'connected_gene': 'HCG22', 'score': 13.48}, {'connected_gene': 'POU5F1', 'score': 5.28}, {'connected_gene': 'HCG27', 'score': 4.61}, {'connected_gene': 'CDSN', 'score': 0.44}]
chr6	GH06I031116	31116942	31117600	0.46	[{'connected_gene': 'PSORS1C1', 'score': 54.32}, {'connected_gene': 'PSORS1C2', 'score': 25.32}, {'connected_gene': 'HLA-C', 'score': 17.04}, {'connected_gene': 'CDSN', 'score': 0.77}]
chr6	GH06I031120	31120436	31120495	0.79	[{'connected_gene': 'CDSN', 'score': 550.77}, {'connected_gene': 'PSORS1C1', 'score': 16.38}]