PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr2	181845052	181845070	CAGE_peak_7_at_UBE2E3_5end
chr2	181845074	181845114	CAGE_peak_2_at_UBE2E3_5end
chr2	181845134	181845154	CAGE_peak_6_at_UBE2E3_5end
chr2	181845298	181845378	CAGE_peak_1_at_UBE2E3_5end
chr2	181845532	181845556	CAGE_peak_5_at_UBE2E3_5end
chr2	181845590	181845614	CAGE_peak_3_at_UBE2E3_5end
chr2	181845639	181845670	CAGE_peak_4_at_UBE2E3_5end
chr2	181845764	181845795	CAGE_peak_9_at_UBE2E3_5end
chr2	181845796	181845824	CAGE_peak_8_at_UBE2E3_5end
chr2	181845843	181845859	CAGE_peak_10_at_UBE2E3_5end
chr2	181848643	181848652	CAGE_peak_20_at_UBE2E3_5end
chr2	181848738	181848765	CAGE_peak_13_at_UBE2E3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I181374	181374878	181375702	0.97	[{'connected_gene': 'ITGA4', 'score': 11.06}, {'connected_gene': 'CERKL', 'score': 8.02}, {'connected_gene': 'UBE2E3', 'score': 5.38}, {'connected_gene': 'GC02P181326', 'score': 0.25}, {'connected_gene': 'ENSG00000226681', 'score': 0.23}, {'connected_gene': 'LINC01934', 'score': 0.06}]
chr2	GH02I181129	181129235	181133207	0.31	[{'connected_gene': 'ITGA4', 'score': 10.35}, {'connected_gene': 'UBE2E3', 'score': 6.42}, {'connected_gene': 'CERKL', 'score': 5.84}, {'connected_gene': 'LINC01934', 'score': 0.31}, {'connected_gene': 'ENSG00000238171', 'score': 0.31}, {'connected_gene': 'MIR4437', 'score': 0.09}]
chr2	GH02I181138	181138684	181139243	0.43	[{'connected_gene': 'ITGA4', 'score': 10.3}, {'connected_gene': 'UBE2E3', 'score': 7.44}, {'connected_gene': 'ENSG00000238171', 'score': 0.29}, {'connected_gene': 'LINC01934', 'score': 0.28}, {'connected_gene': 'MIR4437', 'score': 0.1}]
chr2	GH02I181139	181139434	181143499	1.14	[{'connected_gene': 'ITGA4', 'score': 16.72}, {'connected_gene': 'UBE2E3', 'score': 8.38}, {'connected_gene': 'LINC01934', 'score': 0.28}, {'connected_gene': 'ENSG00000238171', 'score': 0.28}, {'connected_gene': 'MIR4437', 'score': 0.1}]
chr2	GH02I181123	181123506	181128868	1.14	[{'connected_gene': 'ITGA4', 'score': 11.71}, {'connected_gene': 'UBE2E3', 'score': 10.03}, {'connected_gene': 'LINC01934', 'score': 0.34}, {'connected_gene': 'ENSG00000238171', 'score': 0.34}, {'connected_gene': 'MIR4437', 'score': 0.1}]
chr2	GH02I181162	181162800	181166668	0.96	[{'connected_gene': 'ITGA4', 'score': 10.78}, {'connected_gene': 'UBE2E3', 'score': 8.11}, {'connected_gene': 'ENSG00000238171', 'score': 0.22}, {'connected_gene': 'LINC01934', 'score': 0.21}, {'connected_gene': 'MIR4437', 'score': 0.11}]
chr2	GH02I181281	181281055	181282318	0.2	[{'connected_gene': 'ITGA4', 'score': 11.59}, {'connected_gene': 'UBE2E3', 'score': 5.67}, {'connected_gene': 'MIR4437', 'score': 0.34}, {'connected_gene': 'LINC01934', 'score': 0.1}, {'connected_gene': 'ENSG00000238171', 'score': 0.1}]
chr2	GH02I181203	181203084	181203935	0.54	[{'connected_gene': 'ITGA4', 'score': 10.48}, {'connected_gene': 'UBE2E3', 'score': 7.74}, {'connected_gene': 'ENSG00000238171', 'score': 0.15}, {'connected_gene': 'MIR4437', 'score': 0.15}, {'connected_gene': 'LINC01934', 'score': 0.15}]
chr2	GH02I181275	181275323	181276335	0.66	[{'connected_gene': 'ITGA4', 'score': 10.95}, {'connected_gene': 'UBE2E3', 'score': 5.82}, {'connected_gene': 'MIR4437', 'score': 0.31}, {'connected_gene': 'ENSG00000238171', 'score': 0.1}, {'connected_gene': 'LINC01934', 'score': 0.09}]
chr2	GH02I181303	181303873	181315459	1.66	[{'connected_gene': 'ITGA4', 'score': 20.11}, {'connected_gene': 'UBE2E3', 'score': 6.98}, {'connected_gene': 'MIR4437', 'score': 0.77}, {'connected_gene': 'GC02P181326', 'score': 0.37}, {'connected_gene': 'LINC01934', 'score': 0.08}]
chr2	GH02I180983	180983340	180984531	1.31	[{'connected_gene': 'LOC105373772', 'score': 0.77}, {'connected_gene': 'UBE2E3', 'score': 0.37}, {'connected_gene': 'LINC01934', 'score': 0.13}]
chr2	GH02I180985	180985001	180985200	0.2	[{'connected_gene': 'LOC105373772', 'score': 0.77}, {'connected_gene': 'UBE2E3', 'score': 0.37}, {'connected_gene': 'LINC01934', 'score': 0.13}]
chr2	GH02I180978	180978762	180982959	1.99	[{'connected_gene': 'UBE2E3', 'score': 560.77}, {'connected_gene': 'LOC105373772', 'score': 555.88}, {'connected_gene': 'CWC22', 'score': 14.2}, {'connected_gene': 'LINC01934', 'score': 0.13}]
chr2	GH02I181036	181036280	181038659	0.56	[{'connected_gene': 'UBE2E3', 'score': 20.63}, {'connected_gene': 'LOC105373772', 'score': 15.94}, {'connected_gene': 'ITGA4', 'score': 14.43}, {'connected_gene': 'LINC01934', 'score': 0.21}]
chr2	GH02I181189	181189582	181190703	0.2	[{'connected_gene': 'UBE2E3', 'score': 7.6}, {'connected_gene': 'ENSG00000238171', 'score': 0.18}, {'connected_gene': 'LINC01934', 'score': 0.17}, {'connected_gene': 'MIR4437', 'score': 0.13}]
chr2	GH02I181349	181348254	181348403	0.65	[{'connected_gene': 'UBE2E3', 'score': 5.36}, {'connected_gene': 'GC02P181326', 'score': 0.34}, {'connected_gene': 'ENSG00000226681', 'score': 0.18}, {'connected_gene': 'LINC01934', 'score': 0.07}]
chr2	GH02I180625	180625574	180625763	0.49	[{'connected_gene': 'UBE2E3', 'score': 4.0}, {'connected_gene': 'SCHLAP1', 'score': 0.2}, {'connected_gene': 'LOC105373770', 'score': 0.2}, {'connected_gene': 'ENSG00000270289', 'score': 0.1}]
chr2	GH02I180647	180647023	180648336	0.2	[{'connected_gene': 'UBE2E3', 'score': 4.34}, {'connected_gene': 'SCHLAP1', 'score': 0.26}, {'connected_gene': 'LOC105373770', 'score': 0.26}, {'connected_gene': 'ENSG00000270289', 'score': 0.09}]
chr2	GH02I181298	181298739	181300064	0.31	[{'connected_gene': 'UBE2E3', 'score': 6.27}, {'connected_gene': 'MIR4437', 'score': 0.44}, {'connected_gene': 'ENSG00000238171', 'score': 0.08}, {'connected_gene': 'LINC01934', 'score': 0.08}]
chr2	GH02I181300	181300257	181301537	0.97	[{'connected_gene': 'UBE2E3', 'score': 6.56}, {'connected_gene': 'MIR4437', 'score': 0.77}, {'connected_gene': 'ENSG00000238171', 'score': 0.08}, {'connected_gene': 'LINC01934', 'score': 0.08}]
chr2	GH02I181070	181070174	181070383	0.66	[{'connected_gene': 'LINC01934', 'score': 0.29}, {'connected_gene': 'LOC105373772', 'score': 0.16}, {'connected_gene': 'UBE2E3', 'score': 0.15}]
chr2	GH02I181062	181062935	181063281	0.4	[{'connected_gene': 'LINC01934', 'score': 0.28}, {'connected_gene': 'LOC105373772', 'score': 0.18}, {'connected_gene': 'UBE2E3', 'score': 0.15}]
chr2	GH02I180937	180937614	180937763	0.59	[{'connected_gene': 'RPL27AP3', 'score': 550.77}, {'connected_gene': 'UBE2E3', 'score': 5.67}, {'connected_gene': 'FTH1P20', 'score': 0.21}]
chr2	GH02I181104	181104634	181105001	0.85	[{'connected_gene': 'ENSG00000238171', 'score': 550.77}, {'connected_gene': 'ITGA4', 'score': 12.35}, {'connected_gene': 'CERKL', 'score': 10.06}, {'connected_gene': 'NEUROD1', 'score': 10.06}, {'connected_gene': 'ENSG00000234595', 'score': 10.06}, {'connected_gene': 'UBE2E3', 'score': 8.61}, {'connected_gene': 'LINC01934', 'score': 0.77}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000392415	[[181845111, 181845302], [181846742, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928150]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
ENST00000410062	[[181845332, 181845700], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928168]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
ENST00000602710	[[181845850, 181846204], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928168]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
ENST00000602762	[[181846744, 181846963], [181848769, 181848820], [181940222, 181940255], [181940922, 181940959]]	None
ENST00000602837	[[181922417, 181922552], [181925391, 181925539], [181927517, 181927768], [181940925, 181941205]]	None
ENST00000602970	[[181927616, 181927768], [181940222, 181940255], [181940925, 181941312]]	None
ENST00000602303	[[181831974, 181832077], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539]]
ENST00000602959	[[181845099, 181845186], [181845668, 181845700], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927756]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
ENST00000602479	[[181845102, 181845273], [181845668, 181845700], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925537]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925537]]
ENST00000602291	[[181845117, 181845273], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927576]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925537]]
ENST00000602475	[[181845533, 181845700], [181846744, 181846963], [181848769, 181848820], [181854608, 181854773]]	[[181846769, 181846963], [181848769, 181848820], [181854608, 181854699]]
ENST00000602499	[[181845762, 181846112], [181846744, 181846963], [181848769, 181848820], [181922419, 181922543]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922543]]
ENST00000602632	[[181846749, 181846963], [181848769, 181848820], [181852064, 181852121], [181854608, 181854732]]	[[181846769, 181846963], [181848769, 181848820], [181852064, 181852121], [181854608, 181854699]]
ENST00000602888	[[181848732, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927647]]	None
NM_001278555	[[181845111, 181845273], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928154]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
NM_182678	[[181845111, 181845273], [181845668, 181845700], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928154]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
NM_006357	[[181845307, 181845700], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928154]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]
NM_001278554	[[181845850, 181846204], [181846744, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181928154]]	[[181846769, 181846963], [181848769, 181848820], [181922419, 181922552], [181925391, 181925539], [181927517, 181927615]]