PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000320954	[[33155470, 33156040], [33161835, 33161985], [33165899, 33166071], [33171430, 33171559], [33174046, 33174192], [33175673, 33175757], [33183886, 33189265]]	[[33155569, 33156040], [33161835, 33161985], [33165899, 33166071], [33171430, 33171559], [33174046, 33174192], [33175673, 33175757], [33183886, 33183940]]
ENST00000449224	[[33155545, 33156040], [33161835, 33161985], [33165899, 33166071], [33174046, 33174192], [33175673, 33175757], [33183886, 33184650]]	[[33155569, 33156040], [33161835, 33161985], [33165899, 33166071], [33174046, 33174192], [33175673, 33175757], [33183886, 33183940]]
ENST00000485310	[[33156766, 33156831], [33161835, 33161985], [33165899, 33166071], [33171430, 33171559], [33174046, 33174092]]	None
NM_006371	[[33155449, 33156040], [33161835, 33161985], [33165899, 33166071], [33171430, 33171559], [33174046, 33174192], [33175673, 33175757], [33183886, 33189265]]	[[33155569, 33156040], [33161835, 33161985], [33165899, 33166071], [33171430, 33171559], [33174046, 33174192], [33175673, 33175757], [33183886, 33183940]]

Promoter

Chrom	Start	End	Description
chr3	33155444	33155492	CAGE_peak_2_at_CRTAP_5end
chr3	33155500	33155519	CAGE_peak_3_at_CRTAP_5end
chr3	33155525	33155561	CAGE_peak_1_at_CRTAP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I033385	33385019	33386992	0.78	[{'connected_gene': 'UBP1', 'score': 17.1}, {'connected_gene': 'FBXL2', 'score': 12.13}, {'connected_gene': 'CRTAP', 'score': 10.57}, {'connected_gene': 'SUSD5', 'score': 10.04}, {'connected_gene': 'CLASP2', 'score': 9.54}, {'connected_gene': 'TMPPE', 'score': 4.96}, {'connected_gene': 'RNU7-110P', 'score': 0.31}]
chr3	GH03I033377	33377611	33378486	0.43	[{'connected_gene': 'UBP1', 'score': 18.84}, {'connected_gene': 'CRTAP', 'score': 10.58}, {'connected_gene': 'SUSD5', 'score': 10.04}, {'connected_gene': 'CLASP2', 'score': 9.46}, {'connected_gene': 'RNU7-110P', 'score': 0.28}, {'connected_gene': 'FBXL2', 'score': 0.15}]
chr3	GH03I033054	33054133	33055837	1.34	[{'connected_gene': 'TMPPE', 'score': 11.29}, {'connected_gene': 'GLB1', 'score': 11.29}, {'connected_gene': 'SUGT1P2', 'score': 10.58}, {'connected_gene': 'CNOT10-AS1', 'score': 10.58}, {'connected_gene': 'CNOT10', 'score': 10.58}, {'connected_gene': 'CRTAP', 'score': 8.7}, {'connected_gene': 'SUMO2P10', 'score': 0.34}, {'connected_gene': 'SEC13P1', 'score': 0.34}]
chr3	GH03I033131	33131309	33132250	0.85	[{'connected_gene': 'TMPPE', 'score': 11.32}, {'connected_gene': 'GLB1', 'score': 11.32}, {'connected_gene': 'SUSD5', 'score': 10.69}, {'connected_gene': 'CLASP2', 'score': 9.53}, {'connected_gene': 'PIR55934', 'score': 0.39}, {'connected_gene': 'CRTAP', 'score': 0.37}, {'connected_gene': 'GC03P033114', 'score': 0.37}]
chr3	GH03I033124	33124320	33124886	0.2	[{'connected_gene': 'TMPPE', 'score': 11.25}, {'connected_gene': 'GLB1', 'score': 11.25}, {'connected_gene': 'SUSD5', 'score': 10.68}, {'connected_gene': 'CRTAP', 'score': 5.87}, {'connected_gene': 'GC03P033114', 'score': 0.39}, {'connected_gene': 'PIR55934', 'score': 0.37}]
chr3	GH03I033130	33130040	33130437	0.2	[{'connected_gene': 'TMPPE', 'score': 11.24}, {'connected_gene': 'GLB1', 'score': 11.24}, {'connected_gene': 'SUSD5', 'score': 10.69}, {'connected_gene': 'CRTAP', 'score': 4.57}, {'connected_gene': 'PIR55934', 'score': 0.39}, {'connected_gene': 'GC03P033114', 'score': 0.37}]
chr3	GH03I033074	33074569	33074718	0.74	[{'connected_gene': 'TMPPE', 'score': 11.96}, {'connected_gene': 'GLB1', 'score': 11.96}, {'connected_gene': 'CRTAP', 'score': 10.97}, {'connected_gene': 'SUGT1P2', 'score': 10.46}, {'connected_gene': 'CNOT10-AS1', 'score': 10.46}, {'connected_gene': 'CNOT10', 'score': 10.46}, {'connected_gene': 'SUMO2P10', 'score': 0.77}, {'connected_gene': 'SEC13P1', 'score': 0.26}]
chr3	GH03I033067	33067569	33067678	0.83	[{'connected_gene': 'TMPPE', 'score': 10.87}, {'connected_gene': 'GLB1', 'score': 10.87}, {'connected_gene': 'CRTAP', 'score': 10.34}, {'connected_gene': 'SUMO2P10', 'score': 0.44}, {'connected_gene': 'SEC13P1', 'score': 0.29}]
chr3	GH03I033119	33119507	33120308	0.2	[{'connected_gene': 'TMPPE', 'score': 11.59}, {'connected_gene': 'GLB1', 'score': 11.59}, {'connected_gene': 'CRTAP', 'score': 7.73}, {'connected_gene': 'GC03P033114', 'score': 0.44}, {'connected_gene': 'PIR55934', 'score': 0.34}]
chr3	GH03I033118	33118432	33119191	0.31	[{'connected_gene': 'TMPPE', 'score': 11.59}, {'connected_gene': 'GLB1', 'score': 11.59}, {'connected_gene': 'CRTAP', 'score': 6.25}, {'connected_gene': 'GC03P033114', 'score': 0.77}, {'connected_gene': 'PIR55934', 'score': 0.31}]
chr3	GH03I033019	33019303	33019636	0.39	[{'connected_gene': 'CCR4', 'score': 22.02}, {'connected_gene': 'SUGT1P2', 'score': 10.78}, {'connected_gene': 'CNOT10-AS1', 'score': 10.77}, {'connected_gene': 'CNOT10', 'score': 10.77}, {'connected_gene': 'TMPPE', 'score': 10.57}, {'connected_gene': 'GLB1', 'score': 10.57}, {'connected_gene': 'CRTAP', 'score': 4.31}, {'connected_gene': 'SEC13P1', 'score': 0.39}, {'connected_gene': 'LOC105377022', 'score': 0.26}]
chr3	GH03I033044	33044587	33044934	0.78	[{'connected_gene': 'CCR4', 'score': 18.48}, {'connected_gene': 'TMPPE', 'score': 10.55}, {'connected_gene': 'GLB1', 'score': 10.55}, {'connected_gene': 'CRTAP', 'score': 5.28}, {'connected_gene': 'SEC13P1', 'score': 0.39}, {'connected_gene': 'SUMO2P10', 'score': 0.29}]
chr3	GH03I033095	33095512	33098564	2.05	[{'connected_gene': 'GLB1', 'score': 557.27}, {'connected_gene': 'TMPPE', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 10.51}, {'connected_gene': 'CRTAP', 'score': 8.62}, {'connected_gene': 'GC03P033091', 'score': 0.44}, {'connected_gene': 'GC03M033097', 'score': 0.39}]
chr3	GH03I033061	33061964	33064023	0.66	[{'connected_gene': 'GLB1', 'score': 20.16}, {'connected_gene': 'CRTAP', 'score': 18.54}, {'connected_gene': 'TMPPE', 'score': 10.98}, {'connected_gene': 'SUGT1P2', 'score': 10.51}, {'connected_gene': 'CNOT10-AS1', 'score': 10.51}, {'connected_gene': 'CNOT10', 'score': 10.5}, {'connected_gene': 'SUMO2P10', 'score': 0.39}, {'connected_gene': 'SEC13P1', 'score': 0.31}]
chr3	GH03I033060	33060104	33061378	0.4	[{'connected_gene': 'GLB1', 'score': 22.21}, {'connected_gene': 'CRTAP', 'score': 19.85}, {'connected_gene': 'TMPPE', 'score': 11.24}, {'connected_gene': 'SUGT1P2', 'score': 10.51}, {'connected_gene': 'CNOT10-AS1', 'score': 10.51}, {'connected_gene': 'CNOT10', 'score': 10.5}, {'connected_gene': 'SUMO2P10', 'score': 0.37}, {'connected_gene': 'SEC13P1', 'score': 0.31}]
chr3	GH03I033086	33086707	33086766	0.68	[{'connected_gene': 'GLB1', 'score': 550.39}, {'connected_gene': 'CRTAP', 'score': 10.8}, {'connected_gene': 'GC03P033091', 'score': 0.77}, {'connected_gene': 'SUMO2P10', 'score': 0.44}]
chr3	GH03I033111	33111001	33111800	0.56	[{'connected_gene': 'GLB1', 'score': 10.57}, {'connected_gene': 'CRTAP', 'score': 9.07}, {'connected_gene': 'GC03M033097', 'score': 0.77}]
chr3	GH03I033158	33158034	33160743	0.31	[{'connected_gene': 'SUSD5', 'score': 16.27}, {'connected_gene': 'CRTAP', 'score': 15.71}, {'connected_gene': 'TMPPE', 'score': 10.32}, {'connected_gene': 'GLB1', 'score': 10.32}, {'connected_gene': 'PIR50801', 'score': 0.44}, {'connected_gene': 'ENSG00000230119', 'score': 0.29}]
chr3	GH03I033167	33167226	33168294	0.38	[{'connected_gene': 'SUSD5', 'score': 11.03}, {'connected_gene': 'CRTAP', 'score': 4.61}, {'connected_gene': 'PIR50801', 'score': 0.39}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033169	33169398	33170090	0.2	[{'connected_gene': 'SUSD5', 'score': 11.04}, {'connected_gene': 'CRTAP', 'score': 4.65}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033166	33166286	33167024	0.2	[{'connected_gene': 'SUSD5', 'score': 10.77}, {'connected_gene': 'CRTAP', 'score': 10.56}, {'connected_gene': 'PIR50801', 'score': 0.39}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033156	33156869	33158015	0.31	[{'connected_gene': 'SUSD5', 'score': 15.25}, {'connected_gene': 'CRTAP', 'score': 5.25}, {'connected_gene': 'PIR50801', 'score': 0.77}, {'connected_gene': 'ENSG00000230119', 'score': 0.29}]
chr3	GH03I033171	33171550	33172776	0.52	[{'connected_gene': 'SUSD5', 'score': 11.53}, {'connected_gene': 'CRTAP', 'score': 4.64}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.37}]
chr3	GH03I033170	33170116	33171031	0.31	[{'connected_gene': 'SUSD5', 'score': 11.04}, {'connected_gene': 'CRTAP', 'score': 4.63}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.37}]
chr3	GH03I033165	33165744	33166263	0.2	[{'connected_gene': 'SUSD5', 'score': 10.77}, {'connected_gene': 'CRTAP', 'score': 10.56}, {'connected_gene': 'PIR50801', 'score': 0.39}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033173	33173031	33175439	0.38	[{'connected_gene': 'SUSD5', 'score': 16.35}, {'connected_gene': 'CRTAP', 'score': 4.62}, {'connected_gene': 'ENSG00000230119', 'score': 0.37}, {'connected_gene': 'PIR50801', 'score': 0.34}]
chr3	GH03I033168	33168367	33169350	0.2	[{'connected_gene': 'SUSD5', 'score': 11.03}, {'connected_gene': 'CRTAP', 'score': 5.09}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033218	33218358	33219400	1.78	[{'connected_gene': 'SUSD5', 'score': 567.59}, {'connected_gene': 'CRTAP', 'score': 4.77}, {'connected_gene': 'PIR48292', 'score': 0.77}]
chr3	GH03I033113	33113167	33116246	2.06	[{'connected_gene': 'CRTAP', 'score': 564.86}, {'connected_gene': 'GC03P033114', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 31.91}, {'connected_gene': 'PDCD6IP', 'score': 25.19}, {'connected_gene': 'GLB1', 'score': 21.05}, {'connected_gene': 'UBP1', 'score': 11.49}, {'connected_gene': 'PIR55934', 'score': 0.31}]
chr3	GH03I033032	33032169	33033646	0.67	[{'connected_gene': 'SEC13P1', 'score': 550.77}, {'connected_gene': 'TMPPE', 'score': 10.51}, {'connected_gene': 'GLB1', 'score': 10.51}, {'connected_gene': 'SUGT1P2', 'score': 9.34}, {'connected_gene': 'CNOT10-AS1', 'score': 9.34}, {'connected_gene': 'CNOT10', 'score': 9.33}, {'connected_gene': 'SUSD5', 'score': 9.05}, {'connected_gene': 'CRTAP', 'score': 5.1}, {'connected_gene': 'LOC105377022', 'score': 0.22}]
chr3	GH03I033022	33022809	33024110	0.38	[{'connected_gene': 'SEC13P1', 'score': 6.21}, {'connected_gene': 'CRTAP', 'score': 5.2}, {'connected_gene': 'LOC105377022', 'score': 0.25}, {'connected_gene': 'GLB1', 'score': 0.19}]
chr3	GH03I033149	33149282	33149964	0.58	[{'connected_gene': 'ENSG00000272149', 'score': 550.77}, {'connected_gene': 'SUSD5', 'score': 10.74}, {'connected_gene': 'CRTAP', 'score': 7.25}, {'connected_gene': 'ENSG00000271324', 'score': 4.42}, {'connected_gene': 'PIR50801', 'score': 0.77}]
chr3	GH03I033152	33152319	33154079	0.49	[{'connected_gene': 'PIR50801', 'score': 550.77}, {'connected_gene': 'SUSD5', 'score': 11.05}, {'connected_gene': 'CRTAP', 'score': 7.47}, {'connected_gene': 'ENSG00000272149', 'score': 0.44}]
chr3	GH03I033089	33089192	33090298	0.77	[{'connected_gene': 'GC03P033091', 'score': 550.77}, {'connected_gene': 'CRTAP', 'score': 9.46}, {'connected_gene': 'GLB1', 'score': 8.51}, {'connected_gene': 'SUMO2P10', 'score': 0.39}]
chr3	GH03I033141	33141484	33142594	0.2	[{'connected_gene': 'PIR55934', 'score': 550.77}, {'connected_gene': 'CRTAP', 'score': 11.12}, {'connected_gene': 'SUSD5', 'score': 10.71}, {'connected_gene': 'GC03P033114', 'score': 0.31}]
chr3	GH03I032902	32902401	32903450	0.87	[{'connected_gene': 'GC03M032797', 'score': 550.77}, {'connected_gene': 'CRTAP', 'score': 4.26}, {'connected_gene': 'GC03P032897', 'score': 0.44}]
chr3	GH03I033146	33146503	33147777	0.99	[{'connected_gene': 'GC03P033145', 'score': 550.77}, {'connected_gene': 'ENSG00000272149', 'score': 550.77}, {'connected_gene': 'CRTAP', 'score': 0.29}]