PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
MAD1L1	2	NEBL	4	two hybrid	Rolland T (2014)	1
TRIM63	0	NEBL	4	two hybrid	Witt CC (2008)	1
CDH1	4	GOLGA2	2	bioid	Guo Z (2014)	1
ZNF764	2	NEBL	4	affinity chromatography technology	Huttlin EL (2017)	1
NEBL	4	XIRP2	11	x-ray crystallography, two hybrid, pull down, unspecified method	Eulitz S (2013), Eulitz S (2013), Eulitz S (2013), Eulitz S (2013)	4
MYPN	7	ACTN3	2	two hybrid	Bang ML (2001)	1
TRAF1	0	NEBL	4	two hybrid	Rolland T (2014)	1
CEP128	1	CEP170	4	bioid	Gupta GD (2015)	1
NEBL	4	MIPOL1	1	two hybrid	Rolland T (2014)	1
ZDHHC17	1	NEBL	4	two hybrid	Butland SL (2014)	1
NEBL	4	NUTM1	6	two hybrid	Rolland T (2014)	1
CDH1	4	LZTS2	4	bioid	Guo Z (2014)	1
CEP128	1	LZTS2	4	bioid	Gupta GD (2015)	1
HOMER3	0	NEBL	4	two hybrid	Rolland T (2014)	1
PRKAB2	0	LZTS2	4	two hybrid, two hybrid	Corominas R (2014), Rolland T (2014)	2
ZNF764	2	TRIM27	2	affinity chromatography technology	Huttlin EL (2017)	1
ACTN3	2	NEBL	4	two hybrid	Rolland T (2014)	1
TRIM55	2	TRIM27	2	two hybrid	Woodsmith J (2012)	1
GCHFR	1	NEBL	4	affinity chromatography technology	Huttlin EL (2017)	1
CEP128	1	SCLT1	1	bioid	Gupta GD (2015)	1
XIRP1	9	NEBL	4	two hybrid, pull down, unspecified method, protein complementation assay	Eulitz S (2013), Eulitz S (2013), Eulitz S (2013), Eulitz S (2013)	4
CDH1	4	NEBL	4	bioid	Guo Z (2014)	1
ACTN3	2	TRAF1	0	two hybrid	Rolland T (2014)	1
MYPN	7	NEBL	4	two hybrid	Bang ML (2001)	1
PRKAB2	0	NEBL	4	two hybrid	Corominas R (2014)	1
NEBL	4	DHX38	3	affinity chromatography technology	Huttlin EL (2017)	1
CEP128	1	NEBL	4	bioid	Gupta GD (2015)	1
TRAF2	1	LZTS2	4	two hybrid	Rual JF (2005)	1
CEP170	4	DCTN1	6	bioid, bioid	Gupta GD (2015), Gupta GD (2015)	2
CDH1	4	ZYX	2	bioid	Guo Z (2014)	1
TRIM63	0	TRIM55	2	two hybrid, two hybrid	Centner T (2001), Witt CC (2008)	2
NEBL	4	CCDC136	1	two hybrid	Rolland T (2014)	1
NEBL	4	NAXD	1	affinity chromatography technology	Huttlin EL (2017)	1
TRIM27	2	NEBL	4	two hybrid	Rolland T (2014)	1
TRAF1	0	TRAF2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe, pull down, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, imaging technique, affinity chromatography technology, affinity chromatography technology	Bouwmeester T (2004), Takeuchi M (1996), Li S (2011), Li S (2011), Fries KL (1999), He L (2004), Zheng C (2010), Zheng C (2010), Relaix F (1998), Relaix F (1998), Jang HD (2001), Fotin-Mleczek M (2004), Pullen SS (1998), Wicovsky A (2009), Rothe M (1994), Rothe M (1994), Chen TC (2014), Greenfeld H (2015), Huttlin EL (2017)	19
SCLT1	1	NEBL	4	bioid	Gupta GD (2015)	1
NEBL	4	LZTS2	4	two hybrid	Rolland T (2014)	1
TRAF2	1	NEBL	4	two hybrid	Rolland T (2014)	1
TRIM55	2	NEBL	4	two hybrid	Witt CC (2008)	1
MED28	2	NEBL	4	affinity chromatography technology	Lu M (2006)	1
SCLT1	1	CEP170	4	bioid	Gupta GD (2015)	1
ZYX	2	NEBL	4	two hybrid, pull down	Li B (2004), Li B (2004)	2
CEP170	4	NEBL	4	bioid	Gupta GD (2015)	1
NEBL	4	FAM9B	0	two hybrid	Rolland T (2014)	1
DCTN1	6	NEBL	4	bioid	Gupta GD (2015)	1
PRKAB2	0	TRAF2	1	two hybrid, two hybrid, two hybrid	Corominas R (2014), Rolland T (2014), Yu H (2011)	3
ZDHHC17	1	GOLGA2	2	two hybrid, affinity chromatography technology	Butland SL (2014), Butland SL (2014)	2
GOLGA2	2	NEBL	4	two hybrid	Rolland T (2014)	1
NEBL	4	GMCL1	0	two hybrid	Rolland T (2014)	1
ACTN3	2	TRAF2	1	two hybrid	Rolland T (2014)	1
PRKAB2	0	GOLGA2	2	two hybrid, two hybrid	Corominas R (2014), Rolland T (2014)	2