PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000530266	[[20385230, 20385295], [20385782, 20385978], [20388719, 20389171]]	[[20385783, 20385978], [20388719, 20388926]]
ENST00000421577	[[20385268, 20385295], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404880]]	[[20385783, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
ENST00000443524	[[20385270, 20385344], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404914]]	[[20385783, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
ENST00000419348	[[20385288, 20385458], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20405328]]	[[20385357, 20385458], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
ENST00000451739	[[20385342, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20405329]]	[[20385783, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
ENST00000532505	[[20385399, 20385458], [20385782, 20385978], [20388719, 20389059]]	[[20385783, 20385978], [20388719, 20388926]]
ENST00000532081	[[20385686, 20385978], [20388719, 20389201]]	[[20385783, 20385978], [20388719, 20388926]]
ENST00000531058	[[20385725, 20385978], [20388719, 20388827], [20403723, 20403785], [20404525, 20405162]]	[[20385783, 20385978], [20388719, 20388827], [20403723, 20403785], [20404525, 20404751]]
ENST00000533914	[[20397562, 20398263], [20403723, 20403785], [20404525, 20405324]]	None
NM_006410	[[20385230, 20385295], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20405329]]	[[20385783, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
NM_001098521	[[20385246, 20385344], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20405329]]	[[20385783, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
NM_001098520	[[20385288, 20385458], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20405329]]	[[20385357, 20385458], [20385782, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
NM_001098522	[[20385402, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20405329]]	[[20385783, 20385978], [20388719, 20388827], [20398125, 20398263], [20403723, 20403785], [20404525, 20404751]]
NM_001098523	[[20385686, 20385978], [20388719, 20389201]]	[[20385783, 20385978], [20388719, 20388926]]

Promoter

Chrom	Start	End	Description
chr11	20385252	20385320	CAGE_peak_1_at_HTATIP2_5end
chr11	20385327	20385339	CAGE_peak_3_at_HTATIP2_5end
chr11	20385642	20385663	CAGE_peak_4_at_HTATIP2_5end
chr11	20385666	20385757	CAGE_peak_2_at_HTATIP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I019389	19389121	19391036	0.68	[{'connected_gene': 'NAV2-AS4', 'score': 10.37}, {'connected_gene': 'HTATIP2', 'score': 5.56}, {'connected_gene': 'NAV2-IT1', 'score': 0.44}, {'connected_gene': 'RNA5SP335', 'score': 0.39}, {'connected_gene': 'GC11M019401', 'score': 0.39}, {'connected_gene': 'NAV2', 'score': 0.26}]
chr11	GH11I020128	20128355	20128524	0.8	[{'connected_gene': 'DBX1', 'score': 10.48}, {'connected_gene': 'HTATIP2', 'score': 10.47}, {'connected_gene': 'ENSG00000279266', 'score': 0.77}, {'connected_gene': 'NAV2-AS1', 'score': 0.44}]
chr11	GH11I020366	20366246	20369782	1.13	[{'connected_gene': 'HTATIP2', 'score': 44.95}, {'connected_gene': 'SLC6A5', 'score': 9.17}, {'connected_gene': 'PRMT3', 'score': 0.37}]
chr11	GH11I020496	20496975	20497824	0.2	[{'connected_gene': 'HTATIP2', 'score': 16.52}, {'connected_gene': 'LOC105376584', 'score': 0.18}, {'connected_gene': 'PRMT3', 'score': 0.14}]
chr11	GH11I020275	20275706	20277674	0.83	[{'connected_gene': 'HTATIP2', 'score': 5.4}, {'connected_gene': 'GC11P020319', 'score': 0.26}, {'connected_gene': 'LOC105376583', 'score': 0.17}]
chr11	GH11I020473	20473989	20475485	0.72	[{'connected_gene': 'HTATIP2', 'score': 11.45}, {'connected_gene': 'PRMT3', 'score': 0.17}, {'connected_gene': 'LOC105376584', 'score': 0.15}]
chr11	GH11I020458	20458895	20460199	0.95	[{'connected_gene': 'HTATIP2', 'score': 21.31}, {'connected_gene': 'PRMT3', 'score': 0.19}, {'connected_gene': 'LOC105376584', 'score': 0.14}]
chr11	GH11I020362	20362695	20365897	2	[{'connected_gene': 'HTATIP2', 'score': 624.18}, {'connected_gene': 'PRMT3', 'score': 0.34}]
chr11	GH11I020001	20001950	20004146	1.27	[{'connected_gene': 'HTATIP2', 'score': 5.44}, {'connected_gene': 'GC11P020023', 'score': 0.37}, {'connected_gene': 'GC11P020022', 'score': 0.37}, {'connected_gene': 'NAV2-AS3', 'score': 0.34}, {'connected_gene': 'NAV2', 'score': 0.03}]
chr11	GH11I019999	19999749	20001461	1.26	[{'connected_gene': 'HTATIP2', 'score': 5.42}, {'connected_gene': 'NAV2-AS3', 'score': 0.37}, {'connected_gene': 'GC11P020023', 'score': 0.34}, {'connected_gene': 'GC11P020022', 'score': 0.34}, {'connected_gene': 'NAV2', 'score': 0.03}]
chr11	GH11I020342	20342444	20342924	0.63	[{'connected_gene': 'HTATIP2', 'score': 12.12}, {'connected_gene': 'GC11P020361', 'score': 0.37}, {'connected_gene': 'GC11P020319', 'score': 0.34}]
chr11	GH11I020355	20355155	20356372	0.74	[{'connected_gene': 'HTATIP2', 'score': 19.76}, {'connected_gene': 'GC11P020361', 'score': 0.44}, {'connected_gene': 'GC11P020319', 'score': 0.28}]
chr11	GH11I020386	20386392	20389652	2.08	[{'connected_gene': 'PRMT3', 'score': 557.24}, {'connected_gene': 'HTATIP2', 'score': 29.51}, {'connected_gene': 'LOC105376584', 'score': 0.09}]
chr11	GH11I019395	19395174	19395303	0.43	[{'connected_gene': 'NAV2-AS5', 'score': 10.96}, {'connected_gene': 'NAV2', 'score': 10.94}, {'connected_gene': 'NAV2-AS4', 'score': 9.86}, {'connected_gene': 'HTATIP2', 'score': 6.58}, {'connected_gene': 'RNA5SP335', 'score': 0.44}, {'connected_gene': 'GC11M019401', 'score': 0.44}, {'connected_gene': 'NAV2-IT1', 'score': 0.39}]
chr11	GH11I020129	20129178	20130333	0.2	[{'connected_gene': 'ENSG00000279266', 'score': 550.77}, {'connected_gene': 'DBX1', 'score': 10.48}, {'connected_gene': 'HTATIP2', 'score': 10.47}, {'connected_gene': 'NAV2-AS1', 'score': 0.44}]
chr11	GH11I020360	20360245	20361444	0.87	[{'connected_gene': 'GC11P020361', 'score': 550.77}, {'connected_gene': 'HTATIP2', 'score': 61.32}, {'connected_gene': 'GC11P020319', 'score': 0.26}]