PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000286758	[[78432906, 78432942], [78526977, 78527083], [78528856, 78528989], [78531767, 78531848], [78532141, 78532988]]	[[78527019, 78527083], [78528856, 78528989], [78531767, 78531848], [78532141, 78532193]]
ENST00000506590	[[78526985, 78527083], [78528856, 78528989], [78531767, 78532076]]	None
NM_006419	[[78432906, 78432942], [78526977, 78527083], [78528856, 78528989], [78531767, 78531848], [78532141, 78532988]]	[[78527019, 78527083], [78528856, 78528989], [78531767, 78531848], [78532141, 78532193]]

Promoter

Chrom	Start	End	Description
chr4	78526960	78527002	CAGE_peak_1_at_CXCL13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I077586	77586766	77587496	1.05	[{'connected_gene': 'CNOT6L', 'score': 6.94}, {'connected_gene': 'LOC105377296', 'score': 0.77}, {'connected_gene': 'GC04P077551', 'score': 0.28}, {'connected_gene': 'CXCL13', 'score': 0.18}]
chr4	GH04I078244	78244269	78245583	0.31	[{'connected_gene': 'CXCL13', 'score': 4.44}, {'connected_gene': 'GC04M078185', 'score': 0.31}, {'connected_gene': 'SERBP1P5', 'score': 0.21}, {'connected_gene': 'FRAS1', 'score': 0.09}]
chr4	GH04I077539	77538448	77539352	0.79	[{'connected_gene': 'CXCL13', 'score': 12.12}, {'connected_gene': 'CNOT6L', 'score': 4.92}, {'connected_gene': 'GC04P077551', 'score': 0.39}]
chr4	GH04I077369	77369721	77369729	0.23	[{'connected_gene': 'CXCL13', 'score': 2.34}, {'connected_gene': 'LOC100421142', 'score': 0.37}, {'connected_gene': 'GC04M077367', 'score': 0.29}, {'connected_gene': 'CCNG2', 'score': 0.08}]
chr4	GH04I077538	77538247	77538416	0.74	[{'connected_gene': 'CXCL13', 'score': 12.21}, {'connected_gene': 'GC04P077551', 'score': 0.39}]
chr4	GH04I077548	77548350	77548409	0.5	[{'connected_gene': 'CXCL13', 'score': 550.28}, {'connected_gene': 'GC04P077551', 'score': 0.77}]
chr4	GH04I077578	77578984	77580244	0.43	[{'connected_gene': 'LOC105377296', 'score': 0.44}, {'connected_gene': 'GC04P077551', 'score': 0.31}, {'connected_gene': 'CXCL13', 'score': 0.2}]
chr4	GH04I077560	77560267	77560416	0.57	[{'connected_gene': 'GC04P077551', 'score': 0.44}, {'connected_gene': 'LOC105377296', 'score': 0.31}, {'connected_gene': 'CXCL13', 'score': 0.25}]
chr4	GH04I077563	77563860	77565158	0.66	[{'connected_gene': 'GC04P077551', 'score': 0.39}, {'connected_gene': 'LOC105377296', 'score': 0.34}, {'connected_gene': 'CXCL13', 'score': 0.23}]