PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000471927	[[73460547, 73460641], [73462677, 73462773], [73466770, 73466924], [73467564, 73467671], [73470131, 73470236]]	None
ENST00000469844	[[73460556, 73460641], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471758]]	None
ENST00000473197	[[73460572, 73460641], [73466199, 73466459], [73466770, 73466924], [73467564, 73467676]]	None
ENST00000492253	[[73460586, 73460641], [73464679, 73464815], [73466770, 73466924], [73467564, 73467671], [73470131, 73470210]]	None
ENST00000540468	[[73461363, 73461512], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480149]]	[[73461506, 73461512], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
ENST00000539919	[[73461363, 73461512], [73462677, 73462773], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480149]]	[[73466896, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
ENST00000258091	[[73461365, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480132]]	[[73461506, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
ENST00000461290	[[73461396, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471639]]	None
ENST00000464397	[[73461434, 73461512], [73466770, 73467275]]	None
ENST00000399032	[[73461435, 73461512], [73462677, 73462773], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471157]]	[[73466896, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471157]]
ENST00000398422	[[73461435, 73461512], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480132]]	[[73461506, 73461512], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
ENST00000480489	[[73461436, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470321]]	None
ENST00000409924	[[73461436, 73461512], [73466770, 73466924], [73470173, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73474917]]	[[73461506, 73461512], [73466770, 73466924], [73470173, 73470257], [73471124, 73471132]]
ENST00000537131	[[73461436, 73461512], [73466770, 73466924], [73470173, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480132]]	[[73466915, 73466924], [73470173, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
ENST00000538797	[[73461445, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480134]]	[[73470195, 73470257], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
ENST00000473786	[[73461463, 73461512], [73470100, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73476972]]	None
ENST00000482064	[[73466228, 73466407], [73466770, 73466924], [73467564, 73467671], [73470131, 73470258]]	None
ENST00000488856	[[73470973, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476189]]	None
NM_001009570	[[73461363, 73461512], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480150]]	[[73461506, 73461512], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
NM_001166284	[[73461363, 73461512], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480150]]	[[73461506, 73461512], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
NR_029403	[[73461363, 73461512], [73466770, 73466924], [73470173, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480150]]	None
NR_029402	[[73461363, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480150]]	None
NM_006429	[[73461363, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480150]]	[[73461506, 73461512], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]
NM_001166285	[[73461363, 73461512], [73462677, 73462773], [73466770, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73480150]]	[[73466896, 73466924], [73467564, 73467671], [73470131, 73470257], [73471124, 73471177], [73471671, 73471843], [73474889, 73475054], [73476118, 73476307], [73476946, 73477044], [73477433, 73477566], [73478353, 73478560], [73479767, 73479989]]

Promoter

Chrom	Start	End	Description
chr2	73460544	73460558	CAGE_peak_13_at_CCT7_5end
chr2	73460563	73460572	CAGE_peak_14_at_CCT7_5end
chr2	73460574	73460592	CAGE_peak_9_at_CCT7_5end
chr2	73461388	73461399	CAGE_peak_2_at_CCT7_5end
chr2	73461410	73461463	CAGE_peak_1_at_CCT7_5end
chr2	73466862	73466877	CAGE_peak_3_at_CCT7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I073069	73069186	73072691	2.09	[{'connected_gene': 'SFXN5', 'score': 550.77}, {'connected_gene': 'DUSP11', 'score': 27.93}, {'connected_gene': 'CCT7', 'score': 25.63}, {'connected_gene': 'ENSG00000273245', 'score': 21.16}, {'connected_gene': 'ALMS1', 'score': 19.21}, {'connected_gene': 'TPRKB', 'score': 12.37}, {'connected_gene': 'SMYD5', 'score': 11.55}, {'connected_gene': 'DGUOK-AS1', 'score': 10.15}, {'connected_gene': 'RAB11FIP5', 'score': 6.3}, {'connected_gene': 'PIR43769', 'score': 0.77}, {'connected_gene': 'GC02M073119', 'score': 0.77}, {'connected_gene': 'LOC105374800', 'score': 0.37}]
chr2	GH02I073736	73736102	73738330	2.08	[{'connected_gene': 'TPRKB', 'score': 561.34}, {'connected_gene': 'PCGF1', 'score': 18.61}, {'connected_gene': 'DUSP11', 'score': 12.52}, {'connected_gene': 'CCT7', 'score': 12.12}, {'connected_gene': 'ENSG00000273245', 'score': 12.07}, {'connected_gene': 'ALMS1', 'score': 10.98}, {'connected_gene': 'TTC31', 'score': 10.36}, {'connected_gene': 'NAT8B', 'score': 0.28}]
chr2	GH02I073782	73782966	73784196	1.07	[{'connected_gene': 'C2orf78', 'score': 550.77}, {'connected_gene': 'TPRKB', 'score': 10.93}, {'connected_gene': 'CCT7', 'score': 4.54}, {'connected_gene': 'DUSP11', 'score': 0.77}]
chr2	GH02I073030	73030928	73035400	1.15	[{'connected_gene': 'RAB11FIP5', 'score': 9.37}, {'connected_gene': 'CCT7', 'score': 5.2}, {'connected_gene': 'SFXN5', 'score': 4.75}, {'connected_gene': 'LOC105374800', 'score': 0.34}, {'connected_gene': 'GC02P072995', 'score': 0.28}]
chr2	GH02I073232	73232406	73236260	2.12	[{'connected_gene': 'CCT7', 'score': 579.47}, {'connected_gene': 'PRADC1', 'score': 561.49}, {'connected_gene': 'DUSP11', 'score': 64.74}, {'connected_gene': 'ENSG00000273245', 'score': 63.52}, {'connected_gene': 'MOB1A', 'score': 30.39}, {'connected_gene': 'FBXO41', 'score': 12.52}, {'connected_gene': 'TPRKB', 'score': 12.37}, {'connected_gene': 'ALMS1', 'score': 11.03}, {'connected_gene': 'DGUOK-AS1', 'score': 10.15}, {'connected_gene': 'PIR47890', 'score': 0.44}]
chr2	GH02I073212	73212513	73213203	0.82	[{'connected_gene': 'SMYD5', 'score': 550.77}, {'connected_gene': 'PRADC1', 'score': 20.15}, {'connected_gene': 'CCT7', 'score': 17.49}, {'connected_gene': 'RAB11FIP5', 'score': 10.7}, {'connected_gene': 'SFXN5', 'score': 10.16}, {'connected_gene': 'SPR', 'score': 10.0}, {'connected_gene': 'NOTO', 'score': 0.39}]
chr2	GH02I073213	73213336	73215768	2.06	[{'connected_gene': 'SMYD5', 'score': 560.54}, {'connected_gene': 'PRADC1', 'score': 12.55}, {'connected_gene': 'CCT7', 'score': 5.3}]
chr2	GH02I073175	73175043	73178265	1.56	[{'connected_gene': 'SMYD5', 'score': 21.01}, {'connected_gene': 'ALMS1', 'score': 14.1}, {'connected_gene': 'DUSP11', 'score': 13.27}, {'connected_gene': 'SFXN5', 'score': 12.86}, {'connected_gene': 'PRADC1', 'score': 11.86}, {'connected_gene': 'NOTO', 'score': 11.63}, {'connected_gene': 'SPR', 'score': 11.18}, {'connected_gene': 'ENSG00000273245', 'score': 11.14}, {'connected_gene': 'EMX1', 'score': 10.46}, {'connected_gene': 'CCT7', 'score': 5.09}, {'connected_gene': 'EGR4', 'score': 1.45}, {'connected_gene': 'GC02P073186', 'score': 0.44}, {'connected_gene': 'RAB11FIP5', 'score': 0.37}]
chr2	GH02I073191	73191133	73192599	0.79	[{'connected_gene': 'SMYD5', 'score': 21.9}, {'connected_gene': 'RAB11FIP5', 'score': 11.24}, {'connected_gene': 'PRADC1', 'score': 11.02}, {'connected_gene': 'SFXN5', 'score': 10.97}, {'connected_gene': 'SPR', 'score': 9.87}, {'connected_gene': 'EMX1', 'score': 9.82}, {'connected_gene': 'CCT7', 'score': 4.99}, {'connected_gene': 'GC02P073186', 'score': 0.44}, {'connected_gene': 'NOTO', 'score': 0.39}]
chr2	GH02I073244	73244144	73244728	0.65	[{'connected_gene': 'SMYD5', 'score': 12.04}, {'connected_gene': 'FBXO41', 'score': 11.57}, {'connected_gene': 'PRADC1', 'score': 8.0}, {'connected_gene': 'PIR47890', 'score': 0.77}, {'connected_gene': 'CCT7', 'score': 0.39}]
chr2	GH02I074196	74196814	74200680	2.11	[{'connected_gene': 'ENSG00000279070', 'score': 550.77}, {'connected_gene': 'MTHFD2', 'score': 550.77}, {'connected_gene': 'PCGF1', 'score': 40.46}, {'connected_gene': 'DUSP11', 'score': 38.6}, {'connected_gene': 'INO80B', 'score': 38.56}, {'connected_gene': 'ENSG00000273245', 'score': 37.39}, {'connected_gene': 'WBP1', 'score': 28.29}, {'connected_gene': 'AUP1', 'score': 23.63}, {'connected_gene': 'TTC31', 'score': 22.87}, {'connected_gene': 'MOB1A', 'score': 22.46}, {'connected_gene': 'HTRA2', 'score': 22.1}, {'connected_gene': 'SEMA4F', 'score': 22.05}, {'connected_gene': 'ALMS1', 'score': 21.77}, {'connected_gene': 'CCT7', 'score': 20.88}, {'connected_gene': 'BOLA3-AS1', 'score': 20.64}, {'connected_gene': 'WDR54', 'score': 19.46}, {'connected_gene': 'ALMS1P1', 'score': 18.66}, {'connected_gene': 'DGUOK-AS1', 'score': 18.29}, {'connected_gene': 'SLC4A5', 'score': 17.54}, {'connected_gene': 'MOGS', 'score': 14.27}, {'connected_gene': 'CCDC142', 'score': 14.06}, {'connected_gene': 'SMYD5', 'score': 14.03}, {'connected_gene': 'ENSG00000159239', 'score': 12.06}, {'connected_gene': 'DCTN1', 'score': 11.85}, {'connected_gene': 'BOLA3', 'score': 10.84}, {'connected_gene': 'ENSG00000270571', 'score': 10.82}, {'connected_gene': 'TPRKB', 'score': 10.77}, {'connected_gene': 'LOC107985899', 'score': 10.09}, {'connected_gene': 'GC02P074217', 'score': 0.37}]
chr2	GH02I073239	73239622	73239681	0.5	[{'connected_gene': 'PIR47890', 'score': 550.77}, {'connected_gene': 'CCT7', 'score': 550.44}, {'connected_gene': 'NOTO', 'score': 11.08}]