PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000299300	[[69979113, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995350]]	[[69979301, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995105]]
ENST00000544368	[[69979239, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69995074, 69995305]]	[[69979301, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69995074, 69995232]]
ENST00000550010	[[69979251, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69992101, 69992201], [69993642, 69993784], [69995074, 69995305]]	[[69979301, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69992101, 69992121]]
ENST00000543146	[[69979445, 69979789], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995345]]	[[69980595, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995105]]
ENST00000546859	[[69979205, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981952]]	None
ENST00000549933	[[69979238, 69979304], [69980049, 69980124], [69980532, 69980927]]	None
ENST00000550455	[[69979238, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981558]]	None
ENST00000550638	[[69979238, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982216]]	None
ENST00000551620	[[69979238, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983531]]	None
ENST00000551899	[[69979239, 69979304], [69979530, 69979789], [69980049, 69980124], [69980532, 69980705]]	None
ENST00000548787	[[69982941, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987386]]	None
ENST00000546850	[[69983358, 69983467], [69985838, 69986093]]	None
ENST00000553169	[[69986316, 69986883], [69987289, 69987393], [69990935, 69991022]]	None
ENST00000550653	[[69993493, 69993784], [69995074, 69995350]]	None
NM_006431	[[69979207, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995357]]	[[69979301, 69979304], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995105]]
NM_001198842	[[69979461, 69979789], [69980049, 69980124], [69980532, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995357]]	[[69980595, 69980598], [69981284, 69981396], [69981709, 69981786], [69981929, 69982042], [69983264, 69983467], [69985838, 69985939], [69986755, 69986883], [69987289, 69987393], [69990935, 69991055], [69991417, 69991546], [69991747, 69991851], [69992101, 69992201], [69993642, 69993784], [69995074, 69995105]]

Promoter

Chrom	Start	End	Description
chr12	69979113	69979155	CAGE_peak_12_at_CCT2_5end
chr12	69979210	69979252	CAGE_peak_1_at_CCT2_5end
chr12	69979270	69979281	CAGE_peak_2_at_CCT2_5end
chr12	69979461	69979471	CAGE_peak_20_at_CCT2_5end
chr12	69979638	69979683	CAGE_peak_3_at_CCT2_5end
chr12	69980043	69980088	CAGE_peak_4_at_CCT2_5end
chr12	69983302	69983328	CAGE_peak_5_at_CCT2_5end
chr12	69983331	69983347	CAGE_peak_8_at_CCT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I069553	69553624	69556782	0.95	[{'connected_gene': 'NUP107', 'score': 15.96}, {'connected_gene': 'CNOT2', 'score': 13.66}, {'connected_gene': 'KRT8P39', 'score': 12.99}, {'connected_gene': 'CPSF6', 'score': 11.73}, {'connected_gene': 'FRS2', 'score': 7.42}, {'connected_gene': 'CCT2', 'score': 5.0}, {'connected_gene': 'MIR3913-2', 'score': 0.31}, {'connected_gene': 'GC12P069484', 'score': 0.19}, {'connected_gene': 'GC12P069483', 'score': 0.19}]
chr12	GH12I069404	69404130	69406882	0.88	[{'connected_gene': 'LYZ', 'score': 15.05}, {'connected_gene': 'FRS2', 'score': 10.74}, {'connected_gene': 'CCT2', 'score': 10.04}, {'connected_gene': 'YEATS4', 'score': 6.15}, {'connected_gene': 'RN7SL804P', 'score': 0.77}, {'connected_gene': 'RPS26P45', 'score': 0.37}]
chr12	GH12I069610	69610894	69610953	0.5	[{'connected_gene': 'LRRC10', 'score': 550.77}, {'connected_gene': 'CCT2', 'score': 0.31}]
chr12	GH12I069238	69238484	69241576	2.3	[{'connected_gene': 'CPSF6', 'score': 559.71}, {'connected_gene': 'LYZ', 'score': 23.47}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'NUP107', 'score': 10.24}, {'connected_gene': 'MDM2', 'score': 8.14}, {'connected_gene': 'YEATS4', 'score': 8.13}, {'connected_gene': 'FRS2', 'score': 7.94}, {'connected_gene': 'CCT2', 'score': 6.82}, {'connected_gene': 'SLC35E3', 'score': 3.65}, {'connected_gene': 'RAB3IP', 'score': 3.6}, {'connected_gene': 'GC12P069269', 'score': 0.31}]
chr12	GH12I069526	69526959	69529328	0.79	[{'connected_gene': 'FRS2', 'score': 18.68}, {'connected_gene': 'LYZ', 'score': 10.79}, {'connected_gene': 'CCT2', 'score': 5.2}, {'connected_gene': 'YEATS4', 'score': 4.8}, {'connected_gene': 'GC12P069484', 'score': 0.26}, {'connected_gene': 'GC12P069483', 'score': 0.26}, {'connected_gene': 'MIR3913-2', 'score': 0.22}]
chr12	GH12I069445	69445834	69446044	0.22	[{'connected_gene': 'FRS2', 'score': 3.61}, {'connected_gene': 'CPSF6', 'score': 3.17}, {'connected_gene': 'CCT2', 'score': 3.14}, {'connected_gene': 'YEATS4', 'score': 3.12}, {'connected_gene': 'LINC02373', 'score': 0.39}]
chr12	GH12I069469	69469780	69471919	2.05	[{'connected_gene': 'FRS2', 'score': 557.94}, {'connected_gene': 'CCT2', 'score': 10.12}, {'connected_gene': 'LYZ', 'score': 9.86}, {'connected_gene': 'GC12P069484', 'score': 0.39}, {'connected_gene': 'GC12P069483', 'score': 0.39}]
chr12	GH12I069994	69994062	69995358	0.77	[{'connected_gene': 'CCT2', 'score': 13.44}, {'connected_gene': 'MYRFL', 'score': 7.16}, {'connected_gene': 'ENSG00000257815', 'score': 6.65}, {'connected_gene': 'RAB3IP', 'score': 1.48}, {'connected_gene': 'ENSG00000257241', 'score': 0.25}, {'connected_gene': 'LOC100125409', 'score': 0.13}]
chr12	GH12I069986	69986999	69989746	1.2	[{'connected_gene': 'CCT2', 'score': 21.34}, {'connected_gene': 'MYRFL', 'score': 8.32}, {'connected_gene': 'ENSG00000257815', 'score': 7.4}, {'connected_gene': 'RAB3IP', 'score': 2.1}, {'connected_gene': 'ENSG00000257241', 'score': 0.26}, {'connected_gene': 'LOC100125409', 'score': 0.13}]
chr12	GH12I069474	69474420	69476417	1.17	[{'connected_gene': 'CCT2', 'score': 16.73}, {'connected_gene': 'FRS2', 'score': 12.88}, {'connected_gene': 'LYZ', 'score': 9.86}, {'connected_gene': 'CPSF6', 'score': 6.87}, {'connected_gene': 'YEATS4', 'score': 6.67}, {'connected_gene': 'RAB3IP', 'score': 1.55}, {'connected_gene': 'GC12P069484', 'score': 0.44}, {'connected_gene': 'GC12P069483', 'score': 0.44}]
chr12	GH12I069619	69619509	69619530	0.23	[{'connected_gene': 'CCT2', 'score': 20.04}, {'connected_gene': 'FRS2', 'score': 19.78}, {'connected_gene': 'CPSF6', 'score': 19.26}, {'connected_gene': 'YEATS4', 'score': 18.54}, {'connected_gene': 'LYZ', 'score': 10.65}, {'connected_gene': 'RAB3IP', 'score': 2.06}, {'connected_gene': 'LOC105369823', 'score': 0.77}, {'connected_gene': 'LRRC10', 'score': 0.44}]
chr12	GH12I069584	69584769	69586522	2.08	[{'connected_gene': 'CCT2', 'score': 555.47}, {'connected_gene': 'MIR3913-1', 'score': 550.77}, {'connected_gene': 'MIR3913-2', 'score': 550.77}, {'connected_gene': 'FRS2', 'score': 17.32}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'NUP107', 'score': 10.24}, {'connected_gene': 'LYZ', 'score': 10.13}, {'connected_gene': 'LRRC10', 'score': 0.31}]