PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000317605	[[151503076, 151505843]]	[[151504181, 151505261]]
NM_006439	[[151503076, 151505845]]	[[151504181, 151505261]]

Promoter

Chrom	Start	End	Description
chr4	151503105	151503132	CAGE_peak_2_at_MAB21L2_5end
chr4	151503215	151503245	CAGE_peak_4_at_MAB21L2_5end
chr4	151503277	151503309	CAGE_peak_1_at_MAB21L2_5end
chr4	151503350	151503358	CAGE_peak_11_at_MAB21L2_5end
chr4	151503383	151503398	CAGE_peak_3_at_MAB21L2_5end
chr4	151503507	151503518	CAGE_peak_6_at_MAB21L2_5end
chr4	151503541	151503558	CAGE_peak_5_at_MAB21L2_5end
chr4	151503647	151503656	CAGE_peak_14_at_MAB21L2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I150518	150518649	150518838	0.56	[{'connected_gene': 'LRBA', 'score': 14.09}, {'connected_gene': 'MAB21L2', 'score': 10.45}, {'connected_gene': 'ENSG00000249690', 'score': 10.45}, {'connected_gene': 'LOC100419161', 'score': 0.15}]
chr4	GH04I150849	150849129	150849278	0.43	[{'connected_gene': 'LRBA', 'score': 10.05}, {'connected_gene': 'MAB21L2', 'score': 10.01}, {'connected_gene': 'ENSG00000249690', 'score': 10.01}, {'connected_gene': 'GC04M150841', 'score': 0.44}, {'connected_gene': 'GC04M150780', 'score': 0.21}]
chr4	GH04I150708	150708113	150708404	0.63	[{'connected_gene': 'MAB21L2', 'score': 10.31}, {'connected_gene': 'ENSG00000249690', 'score': 10.31}, {'connected_gene': 'LRBA', 'score': 10.24}, {'connected_gene': 'ENSG00000270681', 'score': 8.43}, {'connected_gene': 'ZBTB8OSP1', 'score': 0.39}, {'connected_gene': 'GC04P150696', 'score': 0.39}]
chr4	GH04I150721	150721955	150724781	0.92	[{'connected_gene': 'MAB21L2', 'score': 9.98}, {'connected_gene': 'ENSG00000249690', 'score': 9.98}, {'connected_gene': 'LRBA', 'score': 9.93}, {'connected_gene': 'ENSG00000270681', 'score': 5.79}, {'connected_gene': 'RPS3A', 'score': 5.5}, {'connected_gene': 'ZBTB8OSP1', 'score': 0.77}, {'connected_gene': 'GC04P150764', 'score': 0.26}]
chr4	GH04I150509	150509686	150511258	0.63	[{'connected_gene': 'MAB21L2', 'score': 16.37}, {'connected_gene': 'LRBA', 'score': 15.18}, {'connected_gene': 'ENSG00000249690', 'score': 11.07}, {'connected_gene': 'DCLK2', 'score': 4.29}, {'connected_gene': 'LOC100419161', 'score': 0.17}]
chr4	GH04I150664	150664264	150665979	0.59	[{'connected_gene': 'MAB21L2', 'score': 10.83}, {'connected_gene': 'ENSG00000249690', 'score': 10.82}, {'connected_gene': 'LRBA', 'score': 10.71}, {'connected_gene': 'ENSG00000270681', 'score': 5.06}, {'connected_gene': 'SH3D19', 'score': 4.54}, {'connected_gene': 'RPS3A', 'score': 4.1}, {'connected_gene': 'GC04P150691', 'score': 0.31}]
chr4	GH04I150657	150657919	150658124	0.4	[{'connected_gene': 'MAB21L2', 'score': 11.4}, {'connected_gene': 'ENSG00000249690', 'score': 11.4}, {'connected_gene': 'LRBA', 'score': 11.27}, {'connected_gene': 'SH3D19', 'score': 3.82}, {'connected_gene': 'GC04P150691', 'score': 0.29}]
chr4	GH04I150403	150403001	150403200	0.63	[{'connected_gene': 'MAB21L2', 'score': 10.75}, {'connected_gene': 'ENSG00000249690', 'score': 10.75}, {'connected_gene': 'LRBA', 'score': 10.68}, {'connected_gene': 'LOC100419161', 'score': 0.34}, {'connected_gene': 'GC04P150366', 'score': 0.28}]
chr4	GH04I150628	150628171	150628500	0.51	[{'connected_gene': 'MAB21L2', 'score': 0.25}, {'connected_gene': 'GC04P150691', 'score': 0.21}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150600	150600873	150601113	0.63	[{'connected_gene': 'MAB21L2', 'score': 0.37}, {'connected_gene': 'GC04P150691', 'score': 0.16}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150598	150598955	150599269	0.31	[{'connected_gene': 'MAB21L2', 'score': 0.37}, {'connected_gene': 'GC04P150691', 'score': 0.16}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150599	150599272	150599882	0.4	[{'connected_gene': 'MAB21L2', 'score': 0.37}, {'connected_gene': 'GC04P150691', 'score': 0.16}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150591	150591323	150591975	0.77	[{'connected_gene': 'MAB21L2', 'score': 0.44}, {'connected_gene': 'GC04P150691', 'score': 0.15}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150577	150577837	150588968	2.27	[{'connected_gene': 'MAB21L2', 'score': 550.77}, {'connected_gene': 'ENSG00000270681', 'score': 7.02}, {'connected_gene': 'FAM160A1', 'score': 4.91}, {'connected_gene': 'RPS3A', 'score': 4.4}, {'connected_gene': 'ENSG00000249690', 'score': 0.77}, {'connected_gene': 'GC04P150691', 'score': 0.14}, {'connected_gene': 'LRBA', 'score': 0.04}]
chr4	GH04I150592	150592946	150595072	0.49	[{'connected_gene': 'ENSG00000270681', 'score': 7.09}, {'connected_gene': 'RPS3A', 'score': 4.91}, {'connected_gene': 'MAB21L2', 'score': 0.39}, {'connected_gene': 'GC04P150691', 'score': 0.15}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150308	150308296	150310307	0.43	[{'connected_gene': 'ENSG00000249690', 'score': 9.77}, {'connected_gene': 'MAB21L2', 'score': 9.77}, {'connected_gene': 'LRBA', 'score': 9.74}, {'connected_gene': 'DCLK2', 'score': 4.43}, {'connected_gene': 'GC04P150322', 'score': 0.39}, {'connected_gene': 'RNU7-194P', 'score': 0.15}]
chr4	GH04I150484	150484392	150484403	0.22	[{'connected_gene': 'ENSG00000249690', 'score': 10.71}, {'connected_gene': 'MAB21L2', 'score': 10.71}, {'connected_gene': 'LRBA', 'score': 10.58}, {'connected_gene': 'LOC100419161', 'score': 0.21}]
chr4	GH04I150540	150540201	150541428	0.69	[{'connected_gene': 'ENSG00000249690', 'score': 11.67}, {'connected_gene': 'MAB21L2', 'score': 11.66}, {'connected_gene': 'LRBA', 'score': 11.44}, {'connected_gene': 'LOC100419161', 'score': 0.13}]
chr4	GH04I150680	150679862	150680298	0.51	[{'connected_gene': 'GC04P150691', 'score': 0.39}, {'connected_gene': 'MAB21L2', 'score': 0.15}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150679	150679306	150679642	0.76	[{'connected_gene': 'GC04P150691', 'score': 0.39}, {'connected_gene': 'MAB21L2', 'score': 0.15}, {'connected_gene': 'LRBA', 'score': 0.05}]
chr4	GH04I150681	150680381	150680941	0.4	[{'connected_gene': 'ENSG00000270681', 'score': 5.79}, {'connected_gene': 'GC04P150691', 'score': 0.39}, {'connected_gene': 'MAB21L2', 'score': 0.15}, {'connected_gene': 'LRBA', 'score': 0.05}]