PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000496112	[[44240566, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44251845, 44252488]]	[[44240734, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44251845, 44251881]]
ENST00000447123	[[44240610, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44250621, 44250723], [44251152, 44251203], [44251845, 44252194]]	None
ENST00000223369	[[44240647, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44250621, 44250723], [44251845, 44253893]]	[[44240734, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44250621, 44250723], [44251845, 44251881]]
ENST00000463014	[[44246931, 44247091], [44247731, 44248179]]	None
ENST00000478411	[[44247732, 44247797], [44248005, 44248306]]	None
ENST00000424864	[[44247734, 44247797], [44250440, 44250530], [44250621, 44250723], [44251152, 44251203], [44251845, 44252212]]	[[44247734, 44247797], [44250440, 44250467]]
ENST00000421621	[[44250306, 44250723], [44251845, 44253891]]	None
NM_006555	[[44240577, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44250621, 44250723], [44251845, 44253893]]	[[44240734, 44240838], [44244166, 44244249], [44245983, 44246084], [44246986, 44247091], [44247731, 44247797], [44250621, 44250723], [44251845, 44251881]]

Promoter

Chrom	Start	End	Description
chr7	44240520	44240652	CAGE_peak_1_at_YKT6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I044182	44182468	44183550	0.2	[{'connected_gene': 'CAMK2B', 'score': 5.83}, {'connected_gene': 'YKT6', 'score': 5.3}, {'connected_gene': 'LOC105375257', 'score': 0.39}, {'connected_gene': 'GCK', 'score': 0.37}]
chr7	GH07I044267	44267353	44270787	0.56	[{'connected_gene': 'CAMK2B', 'score': 4.81}, {'connected_gene': 'YKT6', 'score': 4.45}, {'connected_gene': 'PIR57733', 'score': 0.22}]
chr7	GH07I044194	44194483	44195448	0.54	[{'connected_gene': 'MYL7', 'score': 12.37}, {'connected_gene': 'RNA5SP230', 'score': 12.35}, {'connected_gene': 'POLD2', 'score': 12.33}, {'connected_gene': 'POLM', 'score': 11.33}, {'connected_gene': 'AEBP1', 'score': 11.26}, {'connected_gene': 'YKT6', 'score': 7.59}, {'connected_gene': 'GCK', 'score': 6.61}, {'connected_gene': 'LOC105375257', 'score': 0.34}]
chr7	GH07I044175	44175401	44178706	0.74	[{'connected_gene': 'DDX56', 'score': 11.07}, {'connected_gene': 'TUBG1P', 'score': 10.76}, {'connected_gene': 'NACAD', 'score': 10.25}, {'connected_gene': 'PURB', 'score': 9.83}, {'connected_gene': 'GCK', 'score': 5.93}, {'connected_gene': 'URGCP', 'score': 4.82}, {'connected_gene': 'YKT6', 'score': 4.49}, {'connected_gene': 'LOC105375257', 'score': 0.77}]
chr7	GH07I044184	44184162	44185911	1.03	[{'connected_gene': 'POLM', 'score': 33.36}, {'connected_gene': 'SNORA5C', 'score': 33.05}, {'connected_gene': 'DDX56', 'score': 27.37}, {'connected_gene': 'SNORA5B', 'score': 26.14}, {'connected_gene': 'ENSG00000228434', 'score': 24.86}, {'connected_gene': 'TMED4', 'score': 23.87}, {'connected_gene': 'SNORA5A', 'score': 21.83}, {'connected_gene': 'SPDYE1', 'score': 11.07}, {'connected_gene': 'SNHG15', 'score': 10.27}, {'connected_gene': 'YKT6', 'score': 7.55}, {'connected_gene': 'GCK', 'score': 4.61}, {'connected_gene': 'LOC105375257', 'score': 0.39}]
chr7	GH07I044086	44086611	44090017	1.28	[{'connected_gene': 'POLM', 'score': 23.09}, {'connected_gene': 'RASA4CP', 'score': 16.38}, {'connected_gene': 'UBE2D4', 'score': 15.34}, {'connected_gene': 'ENSG00000241057', 'score': 13.4}, {'connected_gene': 'PGAM2', 'score': 12.04}, {'connected_gene': 'ENSG00000239775', 'score': 12.04}, {'connected_gene': 'POLD2', 'score': 11.7}, {'connected_gene': 'AEBP1', 'score': 2.67}, {'connected_gene': 'YKT6', 'score': 1.43}]
chr7	GH07I044213	44213731	44215124	0.76	[{'connected_gene': 'POLM', 'score': 22.81}, {'connected_gene': 'AEBP1', 'score': 11.1}, {'connected_gene': 'CAMK2B', 'score': 10.71}, {'connected_gene': 'SNORA5C', 'score': 10.23}, {'connected_gene': 'RPL32P18', 'score': 10.11}, {'connected_gene': 'YKT6', 'score': 6.95}, {'connected_gene': 'PIR57733', 'score': 0.77}]
chr7	GH07I044200	44200342	44202309	2.02	[{'connected_gene': 'YKT6', 'score': 560.98}, {'connected_gene': 'AEBP1', 'score': 11.18}, {'connected_gene': 'POLM', 'score': 11.09}, {'connected_gene': 'NUDCD3', 'score': 10.83}, {'connected_gene': 'CAMK2B', 'score': 9.92}, {'connected_gene': 'PIR57733', 'score': 0.44}]
chr7	GH07I043510	43510442	43514464	0.69	[{'connected_gene': 'YKT6', 'score': 4.34}, {'connected_gene': 'LUARIS', 'score': 0.39}, {'connected_gene': 'GC07P043445', 'score': 0.2}, {'connected_gene': 'HECW1', 'score': 0.05}]
chr7	GH07I044172	44172088	44173172	0.38	[{'connected_gene': 'LOC105375257', 'score': 550.77}, {'connected_gene': 'URGCP', 'score': 4.46}, {'connected_gene': 'YKT6', 'score': 4.35}, {'connected_gene': 'GCK', 'score': 0.31}]