PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000301998	[[62423247, 62423490], [62449346, 62451866]]	[[62449355, 62450549]]
ENST00000405767	[[62442652, 62442750], [62449346, 62451684]]	[[62449355, 62450549]]
NM_006577	[[62423261, 62423490], [62449346, 62451866]]	[[62449355, 62450549]]
NM_001319075	[[62442655, 62442750], [62449346, 62451866]]	[[62449355, 62450549]]

Promoter

Chrom	Start	End	Description
chr2	62423214	62423235	CAGE_peak_2_at_B3GNT2_5end
chr2	62423242	62423288	CAGE_peak_1_at_B3GNT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I062320	62320440	62322209	0.86	[{'connected_gene': 'XPO1', 'score': 37.49}, {'connected_gene': 'USP34', 'score': 27.83}, {'connected_gene': 'ENSG00000236498', 'score': 22.92}, {'connected_gene': 'B3GNT2', 'score': 20.15}, {'connected_gene': 'CCT4', 'score': 10.83}, {'connected_gene': 'GC02M062151', 'score': 0.39}, {'connected_gene': 'LOC105374761', 'score': 0.22}]
chr2	GH02I062140	62140131	62142679	0.75	[{'connected_gene': 'B3GNT2', 'score': 12.03}, {'connected_gene': 'FAM161A', 'score': 4.58}, {'connected_gene': 'RPSAP26', 'score': 0.77}, {'connected_gene': 'ENSG00000229839', 'score': 0.44}, {'connected_gene': 'GC02P062003', 'score': 0.12}, {'connected_gene': 'COMMD1', 'score': 0.07}]
chr2	GH02I062147	62147397	62151673	1.12	[{'connected_gene': 'B3GNT2', 'score': 15.12}, {'connected_gene': 'FAM161A', 'score': 4.14}, {'connected_gene': 'ENSG00000229839', 'score': 0.77}, {'connected_gene': 'ENSG00000271657', 'score': 0.37}, {'connected_gene': 'GC02M062151', 'score': 0.09}]
chr2	GH02I062194	62194156	62201218	2.5	[{'connected_gene': 'B3GNT2', 'score': 554.72}, {'connected_gene': 'XPO1', 'score': 19.45}, {'connected_gene': 'USP34', 'score': 10.11}, {'connected_gene': 'LOC105377633', 'score': 9.71}, {'connected_gene': 'GC02P062192', 'score': 0.44}, {'connected_gene': 'MIR5192', 'score': 0.44}, {'connected_gene': 'GC02M062151', 'score': 0.12}]
chr2	GH02I062287	62287426	62289010	1.35	[{'connected_gene': 'B3GNT2', 'score': 19.82}, {'connected_gene': 'XPO1', 'score': 13.33}, {'connected_gene': 'ENSG00000236498', 'score': 10.27}, {'connected_gene': 'CCT4', 'score': 9.98}, {'connected_gene': 'LOC105374761', 'score': 0.34}, {'connected_gene': 'GC02M062151', 'score': 0.25}]
chr2	GH02I062102	62102586	62102735	0.46	[{'connected_gene': 'B3GNT2', 'score': 11.45}, {'connected_gene': 'ENSG00000229839', 'score': 0.26}, {'connected_gene': 'RPSAP26', 'score': 0.26}, {'connected_gene': 'GC02P062003', 'score': 0.15}, {'connected_gene': 'COMMD1', 'score': 0.08}]
chr2	GH02I062297	62295746	62297795	1.15	[{'connected_gene': 'B3GNT2', 'score': 25.71}, {'connected_gene': 'ENSG00000236498', 'score': 10.57}, {'connected_gene': 'TMEM17', 'score': 4.73}, {'connected_gene': 'LOC105374761', 'score': 0.29}, {'connected_gene': 'GC02M062151', 'score': 0.28}]
chr2	GH02I062038	62038854	62040586	1.07	[{'connected_gene': 'B3GNT2', 'score': 10.99}, {'connected_gene': 'CCT4', 'score': 10.14}, {'connected_gene': 'COMMD1', 'score': 10.14}, {'connected_gene': 'GC02P062003', 'score': 0.28}, {'connected_gene': 'RPSAP26', 'score': 0.14}]
chr2	GH02I062158	62158981	62159375	0.22	[{'connected_gene': 'B3GNT2', 'score': 11.4}, {'connected_gene': 'CCT4', 'score': 10.04}, {'connected_gene': 'COMMD1', 'score': 10.04}, {'connected_gene': 'ENSG00000271657', 'score': 0.44}, {'connected_gene': 'ENSG00000229839', 'score': 0.39}, {'connected_gene': 'GC02M062151', 'score': 0.09}]
chr2	GH02I062364	62364356	62365535	0.31	[{'connected_gene': 'B3GNT2', 'score': 11.59}, {'connected_gene': 'CCT4', 'score': 10.11}, {'connected_gene': 'COMMD1', 'score': 10.11}, {'connected_gene': 'ENSG00000270335', 'score': 0.39}, {'connected_gene': 'GC02M062375', 'score': 0.39}]
chr2	GH02I062398	62398343	62398886	0.46	[{'connected_gene': 'B3GNT2', 'score': 11.23}, {'connected_gene': 'CCT4', 'score': 10.4}, {'connected_gene': 'COMMD1', 'score': 10.4}, {'connected_gene': 'GC02M062385', 'score': 0.39}, {'connected_gene': 'ENSG00000228541', 'score': 0.21}]
chr2	GH02I062302	62302506	62310469	1.66	[{'connected_gene': 'B3GNT2', 'score': 29.6}, {'connected_gene': 'GC02M062151', 'score': 0.31}, {'connected_gene': 'LOC105374761', 'score': 0.26}]
chr2	GH02I062313	62313245	62315121	1.21	[{'connected_gene': 'B3GNT2', 'score': 20.44}, {'connected_gene': 'GC02M062151', 'score': 0.37}, {'connected_gene': 'LOC105374761', 'score': 0.25}]
chr2	GH02I062318	62318429	62319969	0.57	[{'connected_gene': 'B3GNT2', 'score': 21.51}, {'connected_gene': 'GC02M062151', 'score': 0.39}, {'connected_gene': 'LOC105374761', 'score': 0.23}]
chr2	GH02I062292	62292078	62294482	1.31	[{'connected_gene': 'B3GNT2', 'score': 25.86}, {'connected_gene': 'LOC105374761', 'score': 0.31}, {'connected_gene': 'GC02M062151', 'score': 0.26}]
chr2	GH02I062214	62214906	62221599	1.47	[{'connected_gene': 'B3GNT2', 'score': 562.67}, {'connected_gene': 'MIR5192', 'score': 0.39}, {'connected_gene': 'RN7SL51P', 'score': 0.26}, {'connected_gene': 'GC02M062151', 'score': 0.13}]
chr2	GH02I062222	62222049	62223414	0.2	[{'connected_gene': 'B3GNT2', 'score': 12.2}, {'connected_gene': 'MIR5192', 'score': 0.37}, {'connected_gene': 'RN7SL51P', 'score': 0.28}, {'connected_gene': 'GC02M062151', 'score': 0.14}]
chr2	GH02I062362	62362012	62363384	0.88	[{'connected_gene': 'B3GNT2', 'score': 7.21}, {'connected_gene': 'ENSG00000270335', 'score': 0.39}, {'connected_gene': 'GC02M062375', 'score': 0.39}]
chr2	GH02I062354	62354037	62356058	0.56	[{'connected_gene': 'B3GNT2', 'score': 6.91}, {'connected_gene': 'ENSG00000270335', 'score': 0.77}, {'connected_gene': 'GC02M062375', 'score': 0.34}]
chr2	GH02I062152	62152106	62152275	0.31	[{'connected_gene': 'B3GNT2', 'score': 12.23}, {'connected_gene': 'ENSG00000229839', 'score': 0.44}, {'connected_gene': 'ENSG00000271657', 'score': 0.37}, {'connected_gene': 'GC02M062151', 'score': 0.09}]
chr2	GH02I062163	62163289	62165099	0.79	[{'connected_gene': 'B3GNT2', 'score': 11.62}, {'connected_gene': 'ENSG00000271657', 'score': 0.77}, {'connected_gene': 'ENSG00000229839', 'score': 0.37}, {'connected_gene': 'GC02M062151', 'score': 0.1}]
chr2	GH02I062381	62381626	62383200	0.69	[{'connected_gene': 'B3GNT2', 'score': 4.94}, {'connected_gene': 'GC02M062384', 'score': 0.77}, {'connected_gene': 'GC02M062375', 'score': 0.44}]
chr2	GH02I062340	62340719	62341854	0.91	[{'connected_gene': 'B3GNT2', 'score': 23.91}, {'connected_gene': 'GC02P062346', 'score': 0.77}, {'connected_gene': 'GC02M062151', 'score': 0.44}]
chr2	GH02I062266	62266448	62267455	0.58	[{'connected_gene': 'CCT4', 'score': 9.71}, {'connected_gene': 'COMMD1', 'score': 9.71}, {'connected_gene': 'B3GNT2', 'score': 4.43}, {'connected_gene': 'LOC105374761', 'score': 0.77}, {'connected_gene': 'GC02M062151', 'score': 0.2}]
chr2	GH02I062201	62201424	62203200	1.07	[{'connected_gene': 'CCT4', 'score': 5.12}, {'connected_gene': 'MIR5192', 'score': 0.77}, {'connected_gene': 'B3GNT2', 'score': 0.44}, {'connected_gene': 'GC02M062151', 'score': 0.12}]
chr2	GH02I062264	62264601	62264800	0.2	[{'connected_gene': 'LOC105374761', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 4.48}, {'connected_gene': 'GC02M062151', 'score': 0.2}]
chr2	GH02I062265	62265098	62265600	0.58	[{'connected_gene': 'LOC105374761', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 7.09}, {'connected_gene': 'GC02M062151', 'score': 0.2}]
chr2	GH02I062212	62212401	62212800	0.2	[{'connected_gene': 'MIR5192', 'score': 0.44}, {'connected_gene': 'B3GNT2', 'score': 0.37}, {'connected_gene': 'RN7SL51P', 'score': 0.23}, {'connected_gene': 'GC02M062151', 'score': 0.13}]
chr2	GH02I062208	62208377	62209723	0.86	[{'connected_gene': 'MIR5192', 'score': 0.77}, {'connected_gene': 'B3GNT2', 'score': 0.39}, {'connected_gene': 'RN7SL51P', 'score': 0.23}, {'connected_gene': 'GC02M062151', 'score': 0.13}]
chr2	GH02I062209	62209826	62209847	0.31	[{'connected_gene': 'MIR5192', 'score': 0.77}, {'connected_gene': 'B3GNT2', 'score': 0.39}, {'connected_gene': 'RN7SL51P', 'score': 0.23}, {'connected_gene': 'GC02M062151', 'score': 0.13}]
chr2	GH02I062204	62204801	62206000	0.31	[{'connected_gene': 'MIR5192', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 0.44}, {'connected_gene': 'GC02M062151', 'score': 0.13}]
chr2	GH02I062374	62374406	62374555	0.2	[{'connected_gene': 'GC02M062375', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 11.59}, {'connected_gene': 'CCT4', 'score': 10.11}, {'connected_gene': 'COMMD1', 'score': 10.11}, {'connected_gene': 'ENSG00000270335', 'score': 0.34}]
chr2	GH02I062331	62331722	62336048	0.74	[{'connected_gene': 'GC02M062151', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 24.25}, {'connected_gene': 'GC02P062346', 'score': 0.39}]
chr2	GH02I062192	62192201	62193520	0.46	[{'connected_gene': 'GC02P062192', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 0.77}, {'connected_gene': 'GC02M062151', 'score': 0.11}]
chr2	GH02I062343	62343000	62344675	0.96	[{'connected_gene': 'GC02P062346', 'score': 550.77}, {'connected_gene': 'B3GNT2', 'score': 11.46}, {'connected_gene': 'GC02M062151', 'score': 0.39}]