PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr9	127020202	127020292	CAGE_peak_1_at_NEK6_5end
chr9	127020294	127020301	CAGE_peak_6_at_NEK6_5end
chr9	127020503	127020537	CAGE_peak_4_at_NEK6_5end
chr9	127020553	127020622	CAGE_peak_2_at_NEK6_5end
chr9	127023648	127023661	CAGE_peak_11_at_NEK6_5end
chr9	127023704	127023756	CAGE_peak_3_at_NEK6_5end
chr9	127023762	127023769	CAGE_peak_14_at_NEK6_5end
chr9	127048403	127048433	CAGE_peak_9_at_NEK6_5end
chr9	127048437	127048462	CAGE_peak_10_at_NEK6_5end
chr9	127054217	127054252	CAGE_peak_7_at_NEK6_5end
chr9	127054254	127054276	CAGE_peak_5_at_NEK6_5end
chr9	127054288	127054311	CAGE_peak_8_at_NEK6_5end
chr9	127054324	127054331	CAGE_peak_22_at_NEK6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I124414	124414041	124416091	2.28	[{'connected_gene': 'PSMB7', 'score': 560.8}, {'connected_gene': 'GAPVD1', 'score': 40.49}, {'connected_gene': 'GOLGA1', 'score': 30.84}, {'connected_gene': 'PRPS1P2', 'score': 11.81}, {'connected_gene': 'NEK6', 'score': 11.57}, {'connected_gene': 'GC09P124378', 'score': 0.28}]
chr9	GH09I124242	124242166	124243653	1.05	[{'connected_gene': 'GOLGA1', 'score': 13.76}, {'connected_gene': 'PRPS1P2', 'score': 12.38}, {'connected_gene': 'GAPVD1', 'score': 10.52}, {'connected_gene': 'NEK6', 'score': 5.94}, {'connected_gene': 'GC09M124203', 'score': 0.28}]
chr9	GH09I124410	124410408	124413147	0.97	[{'connected_gene': 'NR5A1', 'score': 10.79}, {'connected_gene': 'ENSG00000231149', 'score': 10.78}, {'connected_gene': 'NEK6', 'score': 10.66}, {'connected_gene': 'PSMB7', 'score': 5.13}, {'connected_gene': 'GC09P124378', 'score': 0.29}]
chr9	GH09I124256	124256030	124269333	2.51	[{'connected_gene': 'NEK6', 'score': 569.44}, {'connected_gene': 'LOC613206', 'score': 550.77}, {'connected_gene': 'ENSG00000227200', 'score': 550.77}, {'connected_gene': 'DENND1A', 'score': 3.55}]
chr9	GH09I124277	124277399	124302118	2.23	[{'connected_gene': 'NEK6', 'score': 575.57}, {'connected_gene': 'DENND1A', 'score': 1.72}, {'connected_gene': 'LOC105376269', 'score': 0.44}, {'connected_gene': 'PIR33879', 'score': 0.22}]
chr9	GH09I124196	124196401	124198709	1.59	[{'connected_gene': 'NEK6', 'score': 11.62}, {'connected_gene': 'DENND1A', 'score': 2.26}, {'connected_gene': 'GC09M124203', 'score': 0.44}, {'connected_gene': 'LOC105376268', 'score': 0.1}]
chr9	GH09I124238	124238616	124240200	1.13	[{'connected_gene': 'NEK6', 'score': 13.46}, {'connected_gene': 'DENND1A', 'score': 2.39}, {'connected_gene': 'GC09M124203', 'score': 0.28}]
chr9	GH09I124220	124220001	124224399	1.55	[{'connected_gene': 'NEK6', 'score': 31.27}, {'connected_gene': 'DENND1A', 'score': 1.26}, {'connected_gene': 'GC09M124203', 'score': 0.37}]
chr9	GH09I124390	124390348	124396308	1.63	[{'connected_gene': 'NEK6', 'score': 11.85}, {'connected_gene': 'PSMB7', 'score': 11.54}, {'connected_gene': 'NR5A1', 'score': 9.99}, {'connected_gene': 'ENSG00000231149', 'score': 9.98}, {'connected_gene': 'ENSG00000231227', 'score': 9.7}, {'connected_gene': 'LOC100505588', 'score': 9.7}, {'connected_gene': 'LHX2', 'score': 9.7}, {'connected_gene': 'DENND1A', 'score': 2.12}, {'connected_gene': 'GC09P124378', 'score': 0.39}]
chr9	GH09I124385	124385538	124387897	1.56	[{'connected_gene': 'NEK6', 'score': 11.07}, {'connected_gene': 'PSMB7', 'score': 10.87}, {'connected_gene': 'ENSG00000231149', 'score': 10.08}, {'connected_gene': 'NR5A1', 'score': 10.08}, {'connected_gene': 'GC09P124378', 'score': 0.44}]
chr9	GH09I124340	124340830	124345669	0.86	[{'connected_gene': 'NEK6', 'score': 15.58}, {'connected_gene': 'PSMB7', 'score': 5.28}, {'connected_gene': 'PIR33879', 'score': 0.77}, {'connected_gene': 'LOC105376269', 'score': 0.22}]
chr9	GH09I124360	124360941	124361966	0.6	[{'connected_gene': 'NEK6', 'score': 8.04}, {'connected_gene': 'PIR47713', 'score': 0.44}, {'connected_gene': 'GC09P124375', 'score': 0.39}, {'connected_gene': 'PSMB7', 'score': 0.23}]
chr9	GH09I124398	124398082	124401397	0.86	[{'connected_gene': 'NEK6', 'score': 11.27}, {'connected_gene': 'PSMB7', 'score': 0.37}, {'connected_gene': 'GC09P124378', 'score': 0.34}]
chr9	GH09I124212	124212198	124213128	0.51	[{'connected_gene': 'NEK6', 'score': 4.54}, {'connected_gene': 'ADGRD2', 'score': 4.22}, {'connected_gene': 'GC09M124203', 'score': 0.44}]
chr9	GH09I124387	124387944	124389836	1.23	[{'connected_gene': 'NEK6', 'score': 11.49}, {'connected_gene': 'ENSG00000231149', 'score': 9.98}, {'connected_gene': 'NR5A1', 'score': 9.98}, {'connected_gene': 'GC09P124378', 'score': 0.39}, {'connected_gene': 'PSMB7', 'score': 0.31}]
chr9	GH09I124215	124215402	124219800	1.55	[{'connected_gene': 'NEK6', 'score': 17.82}, {'connected_gene': 'RPL35', 'score': 11.33}, {'connected_gene': 'DENND1A', 'score': 7.01}, {'connected_gene': 'GC09M124203', 'score': 0.39}]
chr9	GH09I124329	124329730	124331612	0.38	[{'connected_gene': 'NEK6', 'score': 15.52}, {'connected_gene': 'PIR33879', 'score': 0.37}, {'connected_gene': 'LOC105376269', 'score': 0.25}]
chr9	GH09I124308	124308683	124311739	1.21	[{'connected_gene': 'NEK6', 'score': 11.95}, {'connected_gene': 'LOC105376269', 'score': 0.31}, {'connected_gene': 'PIR33879', 'score': 0.28}]
chr9	GH09I124305	124305560	124308365	1.12	[{'connected_gene': 'NEK6', 'score': 13.9}, {'connected_gene': 'LOC105376269', 'score': 0.34}, {'connected_gene': 'PIR33879', 'score': 0.28}]
chr9	GH09I124303	124302535	124303512	0.4	[{'connected_gene': 'NEK6', 'score': 10.75}, {'connected_gene': 'LOC105376269', 'score': 0.37}, {'connected_gene': 'PIR33879', 'score': 0.26}]
chr9	GH09I124331	124331891	124333322	0.31	[{'connected_gene': 'NEK6', 'score': 15.6}, {'connected_gene': 'PIR33879', 'score': 0.39}, {'connected_gene': 'LOC105376269', 'score': 0.25}]
chr9	GH09I124131	124131241	124132373	0.56	[{'connected_gene': 'NEK6', 'score': 4.92}, {'connected_gene': 'GC09M124203', 'score': 0.19}, {'connected_gene': 'LOC105376268', 'score': 0.15}]
chr9	GH09I124132	124132762	124133193	0.68	[{'connected_gene': 'NEK6', 'score': 5.01}, {'connected_gene': 'GC09M124203', 'score': 0.19}, {'connected_gene': 'LOC105376268', 'score': 0.15}]
chr9	GH09I124137	124137034	124139823	1.01	[{'connected_gene': 'NEK6', 'score': 5.75}, {'connected_gene': 'GC09M124203', 'score': 0.2}, {'connected_gene': 'LOC105376268', 'score': 0.14}]
chr9	GH09I124133	124133376	124134431	0.99	[{'connected_gene': 'NEK6', 'score': 6.56}, {'connected_gene': 'GC09M124203', 'score': 0.19}, {'connected_gene': 'LOC105376268', 'score': 0.15}]
chr9	GH09I124142	124142746	124145373	1.15	[{'connected_gene': 'NEK6', 'score': 6.86}, {'connected_gene': 'GC09M124203', 'score': 0.21}, {'connected_gene': 'LOC105376268', 'score': 0.14}]
chr9	GH09I124270	124270628	124272625	0.84	[{'connected_gene': 'NEK6', 'score': 20.02}, {'connected_gene': 'PIR48553', 'score': 0.77}, {'connected_gene': 'ENSG00000227200', 'score': 0.44}]
chr9	GH09I124269	124269823	124270485	0.38	[{'connected_gene': 'NEK6', 'score': 19.36}, {'connected_gene': 'PIR48553', 'score': 0.77}, {'connected_gene': 'ENSG00000227200', 'score': 0.44}]
chr9	GH09I124207	124207963	124210003	0.76	[{'connected_gene': 'NEK6', 'score': 8.09}, {'connected_gene': 'GC09M124203', 'score': 0.77}]
chr9	GH09I124251	124251367	124252811	0.86	[{'connected_gene': 'NEK6', 'score': 0.44}, {'connected_gene': 'GC09M124203', 'score': 0.25}]
chr9	GH09I124213	124213839	124214999	0.92	[{'connected_gene': 'NEK6', 'score': 17.86}, {'connected_gene': 'GC09M124203', 'score': 0.39}]
chr9	GH09I124254	124254122	124254800	0.8	[{'connected_gene': 'NEK6', 'score': 14.83}, {'connected_gene': 'GC09M124203', 'score': 0.23}]
chr9	GH09I124255	124255314	124255577	0.74	[{'connected_gene': 'NEK6', 'score': 8.29}, {'connected_gene': 'GC09M124203', 'score': 0.23}]
chr9	GH09I124210	124210578	124211784	0.87	[{'connected_gene': 'NEK6', 'score': 12.62}, {'connected_gene': 'GC09M124203', 'score': 0.44}]
chr9	GH09I124302	124302385	124302401	0.4	[{'connected_gene': 'LOC105376269', 'score': 0.37}, {'connected_gene': 'PIR33879', 'score': 0.26}, {'connected_gene': 'NEK6', 'score': 0.26}]
chr9	GH09I124206	124205800	124207837	0.38	[{'connected_gene': 'LOC105376268', 'score': 4.99}, {'connected_gene': 'GC09M124203', 'score': 0.77}, {'connected_gene': 'NEK6', 'score': 0.23}]
chr9	GH09I124378	124378053	124378365	0.51	[{'connected_gene': 'GC09P124378', 'score': 550.77}, {'connected_gene': 'NEK6', 'score': 10.07}, {'connected_gene': 'GC09P124375', 'score': 0.77}, {'connected_gene': 'PSMB7', 'score': 0.28}]
chr9	GH09I124272	124272996	124276623	0.56	[{'connected_gene': 'PIR48553', 'score': 550.77}, {'connected_gene': 'NEK6', 'score': 19.71}, {'connected_gene': 'LOC105376269', 'score': 0.44}]
chr9	GH09I124205	124205401	124205600	0.2	[{'connected_gene': 'GC09M124203', 'score': 550.77}, {'connected_gene': 'NEK6', 'score': 0.23}]
chr9	GH09I124273	124272644	124272733	0.4	[{'connected_gene': 'PIR48553', 'score': 550.77}, {'connected_gene': 'ENSG00000227200', 'score': 0.44}, {'connected_gene': 'NEK6', 'score': 0.37}]
chr9	GH09I124208	124205001	124205200	0.2	[{'connected_gene': 'GC09M124203', 'score': 550.77}, {'connected_gene': 'NEK6', 'score': 0.23}]
chr9	GH09I124339	124339922	124340071	0.31	[{'connected_gene': 'PIR33879', 'score': 0.44}, {'connected_gene': 'LOC105376269', 'score': 0.22}, {'connected_gene': 'NEK6', 'score': 0.18}]
chr9	GH09I124320	124320304	124321091	0.95	[{'connected_gene': 'PIR33879', 'score': 0.31}, {'connected_gene': 'LOC105376269', 'score': 0.28}, {'connected_gene': 'NEK6', 'score': 0.21}]
chr9	GH09I124357	124357658	124358431	0.43	[{'connected_gene': 'PIR47713', 'score': 0.77}, {'connected_gene': 'LOC100129034', 'score': 0.77}, {'connected_gene': 'GC09P124375', 'score': 0.37}, {'connected_gene': 'PSMB7', 'score': 0.22}, {'connected_gene': 'NEK6', 'score': 0.15}]
chr9	GH09I124352	124352148	124355613	0.38	[{'connected_gene': 'PIR52389', 'score': 550.77}, {'connected_gene': 'PIR47713', 'score': 550.77}, {'connected_gene': 'LOC100129034', 'score': 550.77}, {'connected_gene': 'NEK6', 'score': 11.99}, {'connected_gene': 'PSMB7', 'score': 6.79}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000540326	[[127019884, 127020000], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114717]]	[[127019975, 127020000], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000373603	[[127019884, 127020000], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127115586]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000373600	[[127020241, 127020364], [127055127, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127115586]]	[[127055219, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000320246	[[127020248, 127020364], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127115586]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000545174	[[127020529, 127020640], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114717]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000444973	[[127020538, 127020640], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101886]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101886]]
ENST00000454453	[[127020539, 127020640], [127064214, 127064333], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110076]]	[[127064243, 127064333], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110076]]
ENST00000373596	[[127023751, 127023858], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724]]
ENST00000425237	[[127023751, 127023862], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101893]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101893]]
ENST00000423785	[[127048718, 127048769], [127055127, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088684]]	[[127055219, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088684]]
ENST00000394199	[[127054249, 127054367], [127055127, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114717]]	[[127055219, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000546191	[[127054249, 127054367], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114717]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000422297	[[127054257, 127054367], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101887]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101887]]
ENST00000539416	[[127054698, 127054818], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114717]]	[[127054772, 127054818], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
ENST00000447379	[[127062263, 127062436], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717]]
NM_001166167	[[127019884, 127020000], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127019975, 127020000], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
NM_014397	[[127020195, 127020364], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
NM_001145001	[[127020195, 127020364], [127055127, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127055219, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
NM_001166168	[[127020529, 127020640], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
NM_001166170	[[127054249, 127054367], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127064243, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
NM_001166171	[[127054249, 127054367], [127055127, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127055219, 127055292], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]
NM_001166169	[[127054698, 127054818], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127114721]]	[[127054772, 127054818], [127064214, 127064333], [127074787, 127074928], [127076201, 127076264], [127083737, 127083848], [127088608, 127088717], [127089616, 127089724], [127101849, 127101944], [127109987, 127110101], [127113115, 127113226]]