PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000527278	[[64342870, 64343163], [64353789, 64353834], [64354125, 64354275], [64357725, 64358432], [64377407, 64377496], [64377958, 64378085], [64378574, 64378670], [64388031, 64389502]]	None
ENST00000476730	[[64330549, 64330759], [64339827, 64340617], [64348950, 64350233]]	None
ENST00000465954	[[64338037, 64338252], [64338758, 64338873], [64339827, 64340109]]	None
ENST00000471926	[[64342890, 64343163], [64348950, 64349246]]	None
ENST00000476120	[[64363624, 64363797], [64377958, 64378085], [64378574, 64378670], [64388031, 64389635]]	[[64363695, 64363797], [64377958, 64378085], [64378574, 64378670], [64388031, 64389416]]
ENST00000489672	[[64363630, 64363744], [64377407, 64377496], [64377958, 64378085], [64378574, 64378670], [64383763, 64384809]]	None
ENST00000319636	[[64363630, 64363744], [64377407, 64377496], [64377958, 64378085], [64378574, 64378670], [64388031, 64389416]]	[[64378051, 64378085], [64378574, 64378670], [64388031, 64389416]]
ENST00000545510	[[64363633, 64363797], [64377958, 64378085], [64378574, 64378670], [64383763, 64384595]]	[[64363794, 64363797], [64377958, 64378085], [64378574, 64378670], [64383763, 64383783]]
ENST00000395375	[[64363665, 64363797], [64377407, 64377496], [64377958, 64378085], [64378574, 64378670], [64388031, 64391344]]	[[64363695, 64363797], [64377407, 64377496], [64377958, 64377968]]
NM_021148	[[64363619, 64363797], [64377958, 64378085], [64378574, 64378670], [64388031, 64391955]]	[[64363695, 64363797], [64377958, 64378085], [64378574, 64378670], [64388031, 64389416]]
NR_003099	[[64363619, 64363797], [64377407, 64377496], [64377958, 64378085], [64378574, 64378670], [64388031, 64391955]]	None

Promoter

Chrom	Start	End	Description
chr7	64337960	64337986	CAGE_peak_6_at_ZNF273_5end
chr7	64337988	64338010	CAGE_peak_8_at_ZNF273_5end
chr7	64342863	64342905	CAGE_peak_3_at_ZNF273_5end
chr7	64342913	64342935	CAGE_peak_2_at_ZNF273_5end
chr7	64342942	64342975	CAGE_peak_5_at_ZNF273_5end
chr7	64363638	64363667	CAGE_peak_1_at_ZNF273_5end
chr7	64363682	64363692	CAGE_peak_4_at_ZNF273_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I065443	65443397	65446899	0.88	[{'connected_gene': 'CCT6P3', 'score': 19.58}, {'connected_gene': 'ZNF117', 'score': 11.22}, {'connected_gene': 'ZNF273', 'score': 6.84}, {'connected_gene': 'ERV3-1', 'score': 6.29}, {'connected_gene': 'CRCP', 'score': 4.66}, {'connected_gene': 'ENSG00000238124', 'score': 0.37}, {'connected_gene': 'ZNF92', 'score': 0.19}]
chr7	GH07I064866	64866694	64866916	0.22	[{'connected_gene': 'ZNF117', 'score': 14.1}, {'connected_gene': 'GTF2IP14', 'score': 5.66}, {'connected_gene': 'ZNF273', 'score': 0.77}, {'connected_gene': 'EEF1DP4', 'score': 0.77}]
chr7	GH07I064875	64875044	64875167	0.22	[{'connected_gene': 'EEF1DP4', 'score': 42.71}, {'connected_gene': 'ZNF117', 'score': 13.93}, {'connected_gene': 'ZNF680', 'score': 4.22}, {'connected_gene': 'ZNF273', 'score': 0.77}, {'connected_gene': 'LOC441239', 'score': 0.39}]
chr7	GH07I064801	64801886	64802984	0.71	[{'connected_gene': 'EEF1DP4', 'score': 42.77}, {'connected_gene': 'LOC441239', 'score': 11.12}, {'connected_gene': 'ZNF273', 'score': 5.04}, {'connected_gene': 'ZNF138', 'score': 0.44}, {'connected_gene': 'PIR39219', 'score': 0.29}]
chr7	GH07I064904	64904801	64905800	0.69	[{'connected_gene': 'EEF1DP4', 'score': 42.27}, {'connected_gene': 'ZNF273', 'score': 7.48}, {'connected_gene': 'LOC441239', 'score': 0.37}, {'connected_gene': 'VN1R42P', 'score': 0.31}]
chr7	GH07I064907	64907214	64908547	0.62	[{'connected_gene': 'EEF1DP4', 'score': 36.77}, {'connected_gene': 'ZNF273', 'score': 7.25}, {'connected_gene': 'LOC441239', 'score': 0.37}, {'connected_gene': 'VN1R42P', 'score': 0.31}]
chr7	GH07I064892	64891247	64891529	0.69	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 36.18}, {'connected_gene': 'ZNF117', 'score': 13.94}, {'connected_gene': 'ZNF273', 'score': 0.34}, {'connected_gene': 'VN1R42P', 'score': 0.26}]
chr7	GH07I064894	64891907	64892131	0.84	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 4.41}, {'connected_gene': 'ZNF680', 'score': 4.18}, {'connected_gene': 'ZNF273', 'score': 0.34}, {'connected_gene': 'VN1R42P', 'score': 0.26}]
chr7	GH07I064887	64887733	64889600	1.05	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 39.16}, {'connected_gene': 'ZNF273', 'score': 9.25}, {'connected_gene': 'ZNF117', 'score': 7.17}, {'connected_gene': 'ENSG00000234338', 'score': 7.12}]
chr7	GH07I064893	64891608	64891788	0.85	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 36.18}, {'connected_gene': 'ZNF273', 'score': 0.34}, {'connected_gene': 'VN1R42P', 'score': 0.26}]
chr7	GH07I064891	64890665	64890914	0.31	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 36.2}, {'connected_gene': 'ZNF273', 'score': 0.34}, {'connected_gene': 'VN1R42P', 'score': 0.26}]
chr7	GH07I064889	64889647	64889828	0.31	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'EEF1DP4', 'score': 40.73}, {'connected_gene': 'ZNF273', 'score': 0.37}]
chr7	GH07I064890	64890252	64890434	0.31	[{'connected_gene': 'LOC441239', 'score': 550.77}, {'connected_gene': 'ZNF273', 'score': 7.31}, {'connected_gene': 'VN1R42P', 'score': 0.26}]
chr7	GH07I064882	64882400	64882601	0.68	[{'connected_gene': 'LOC441239', 'score': 0.44}, {'connected_gene': 'ZNF273', 'score': 0.39}]
chr7	GH07I064995	64995998	65007771	2.5	[{'connected_gene': 'ERV3-1', 'score': 588.2}, {'connected_gene': 'GTF2IP14', 'score': 61.02}, {'connected_gene': 'CCT6P3', 'score': 49.62}, {'connected_gene': 'INTS4P1', 'score': 33.81}, {'connected_gene': 'ZNF117', 'score': 18.18}, {'connected_gene': 'CCT6P1', 'score': 16.97}, {'connected_gene': 'VKORC1L1', 'score': 15.19}, {'connected_gene': 'ZNF736', 'score': 12.43}, {'connected_gene': 'ENSG00000227113', 'score': 12.28}, {'connected_gene': 'EEF1DP4', 'score': 6.58}, {'connected_gene': 'ZNF680', 'score': 4.33}, {'connected_gene': 'ZNF273', 'score': 3.91}, {'connected_gene': 'VN1R43P', 'score': 0.31}]
chr7	GH07I064877	64877201	64877801	0.68	[{'connected_gene': 'ZNF273', 'score': 7.41}, {'connected_gene': 'ZNF117', 'score': 6.58}, {'connected_gene': 'ZNF107', 'score': 4.31}, {'connected_gene': 'LOC441239', 'score': 0.39}]
chr7	GH07I064902	64902308	64904580	1.98	[{'connected_gene': 'ZNF273', 'score': 557.5}, {'connected_gene': 'EEF1DP4', 'score': 37.67}, {'connected_gene': 'ZNF117', 'score': 13.97}, {'connected_gene': 'GTF2IP14', 'score': 11.84}, {'connected_gene': 'LOC441239', 'score': 0.39}, {'connected_gene': 'VN1R42P', 'score': 0.31}]
chr7	GH07I065080	65080201	65082044	1.13	[{'connected_gene': 'GTF2IP14', 'score': 53.56}, {'connected_gene': 'INTS4P1', 'score': 33.45}, {'connected_gene': 'CCT6P3', 'score': 26.34}, {'connected_gene': 'ZNF117', 'score': 7.32}, {'connected_gene': 'ZNF273', 'score': 5.25}, {'connected_gene': 'ERV3-1', 'score': 4.1}, {'connected_gene': 'ENSG00000227113', 'score': 0.44}]
chr7	GH07I064947	64947201	64948000	0.85	[{'connected_gene': 'LOC105375328', 'score': 550.77}, {'connected_gene': 'VKORC1L1', 'score': 8.41}, {'connected_gene': 'ZNF273', 'score': 7.78}, {'connected_gene': 'PIR39696', 'score': 0.39}]