PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000357632	[[45927995, 45928147], [45936397, 45936446], [45942301, 45944667]]	[[45936425, 45936446], [45942301, 45943390]]
ENST00000395963	[[45928000, 45928147], [45942301, 45944666]]	[[45942316, 45943390]]
ENST00000463197	[[45928001, 45928147], [45936397, 45936600]]	None
ENST00000355983	[[45928040, 45928147], [45936397, 45936446], [45939052, 45939138], [45942301, 45943390]]	[[45942316, 45943390]]
ENST00000422395	[[45928040, 45928147], [45936397, 45936446], [45939052, 45939138], [45942301, 45943390]]	[[45936425, 45936446], [45939052, 45939138], [45942301, 45942518]]
NM_006641	[[45927995, 45928147], [45942301, 45944667]]	[[45942316, 45943390]]
NM_031200	[[45927995, 45928147], [45936397, 45936446], [45942301, 45944667]]	[[45936425, 45936446], [45942301, 45943390]]
NM_001256369	[[45927995, 45928147], [45936397, 45936446], [45939052, 45939138], [45942301, 45944667]]	[[45942316, 45943390]]

Promoter

Chrom	Start	End	Description
chr3	45927994	45928015	CAGE_peak_2_at_CCR9_5end
chr3	45928029	45928050	CAGE_peak_1_at_CCR9_5end
chr3	45928083	45928100	CAGE_peak_3_at_CCR9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I045892	45892435	45893236	0.58	[{'connected_gene': 'FYCO1', 'score': 7.24}, {'connected_gene': 'CCR9', 'score': 0.44}, {'connected_gene': 'GC03P045904', 'score': 0.39}, {'connected_gene': 'LZTFL1', 'score': 0.34}]
chr3	GH03I045778	45778359	45780394	0.43	[{'connected_gene': 'LZTFL1', 'score': 10.9}, {'connected_gene': 'SDHDP4', 'score': 10.43}, {'connected_gene': 'CCR9', 'score': 10.42}, {'connected_gene': 'CCR2', 'score': 9.28}, {'connected_gene': 'SACM1L', 'score': 5.56}, {'connected_gene': 'SLC6A20', 'score': 0.37}, {'connected_gene': 'GC03M045749', 'score': 0.31}]
chr3	GH03I045957	45957721	45959563	0.51	[{'connected_gene': 'LZTFL1', 'score': 10.73}, {'connected_gene': 'CCR9', 'score': 9.77}, {'connected_gene': 'SDHDP4', 'score': 9.77}, {'connected_gene': 'CCR2', 'score': 9.4}, {'connected_gene': 'CXCR6', 'score': 5.43}, {'connected_gene': 'FYCO1', 'score': 0.28}]
chr3	GH03I045816	45816034	45819818	1	[{'connected_gene': 'LZTFL1', 'score': 10.99}, {'connected_gene': 'CCR9', 'score': 10.03}, {'connected_gene': 'SDHDP4', 'score': 10.03}, {'connected_gene': 'SLC6A20', 'score': 5.75}, {'connected_gene': 'CXCR6', 'score': 4.59}, {'connected_gene': 'PIR58059', 'score': 0.44}]
chr3	GH03I045841	45841089	45842821	2.22	[{'connected_gene': 'LZTFL1', 'score': 561.0}, {'connected_gene': 'CCR9', 'score': 11.35}, {'connected_gene': 'SDHDP4', 'score': 11.35}, {'connected_gene': 'CXCR6', 'score': 10.65}, {'connected_gene': 'LARS2', 'score': 5.31}, {'connected_gene': 'GC03P045849', 'score': 0.44}, {'connected_gene': 'PIR58059', 'score': 0.37}]
chr3	GH03I045852	45852688	45853051	0.77	[{'connected_gene': 'LZTFL1', 'score': 11.24}, {'connected_gene': 'CCR9', 'score': 10.99}, {'connected_gene': 'SDHDP4', 'score': 10.99}, {'connected_gene': 'CXCR6', 'score': 1.45}, {'connected_gene': 'GC03P045849', 'score': 0.77}, {'connected_gene': 'GC03M045883', 'score': 0.29}]
chr3	GH03I045831	45831190	45832055	0.2	[{'connected_gene': 'LZTFL1', 'score': 10.93}, {'connected_gene': 'CCR9', 'score': 10.35}, {'connected_gene': 'SDHDP4', 'score': 10.35}, {'connected_gene': 'PIR58059', 'score': 0.44}, {'connected_gene': 'GC03P045849', 'score': 0.37}]
chr3	GH03I045834	45834134	45835796	0.2	[{'connected_gene': 'LZTFL1', 'score': 11.04}, {'connected_gene': 'CXCR6', 'score': 11.02}, {'connected_gene': 'SDHDP4', 'score': 10.99}, {'connected_gene': 'CCR9', 'score': 10.98}, {'connected_gene': 'SLC6A20', 'score': 5.62}, {'connected_gene': 'PIR58059', 'score': 0.44}, {'connected_gene': 'GC03P045849', 'score': 0.39}]
chr3	GH03I045860	45860599	45862218	1	[{'connected_gene': 'SDHDP4', 'score': 11.61}, {'connected_gene': 'SLC6A20', 'score': 11.61}, {'connected_gene': 'CCR9', 'score': 11.59}, {'connected_gene': 'LZTFL1', 'score': 10.76}, {'connected_gene': 'LIMD1', 'score': 9.65}, {'connected_gene': 'LARS2', 'score': 5.31}, {'connected_gene': 'GC03P045849', 'score': 0.39}, {'connected_gene': 'GC03M045883', 'score': 0.34}]
chr3	GH03I045687	45687801	45695990	2.51	[{'connected_gene': 'SACM1L', 'score': 578.12}, {'connected_gene': 'ZNF502', 'score': 27.74}, {'connected_gene': 'LIMD1', 'score': 21.39}, {'connected_gene': 'RN7SL145P', 'score': 19.37}, {'connected_gene': 'RPS24P8', 'score': 15.28}, {'connected_gene': 'ZNF501', 'score': 12.2}, {'connected_gene': 'ZDHHC3', 'score': 11.78}, {'connected_gene': 'LARS2-AS1', 'score': 10.03}, {'connected_gene': 'CCR9', 'score': 8.89}, {'connected_gene': 'SDHDP4', 'score': 8.89}, {'connected_gene': 'TRR-ACG2-1', 'score': 0.77}, {'connected_gene': 'LIMD1-AS1', 'score': 0.77}, {'connected_gene': 'GC03M045689', 'score': 0.77}]
chr3	GH03I045696	45696138	45698591	0.43	[{'connected_gene': 'SACM1L', 'score': 27.79}, {'connected_gene': 'LIMD1', 'score': 21.38}, {'connected_gene': 'CCR9', 'score': 8.89}, {'connected_gene': 'SDHDP4', 'score': 8.89}, {'connected_gene': 'LIMD1-AS1', 'score': 0.44}, {'connected_gene': 'RN7SL145P', 'score': 0.25}]
chr3	GH03I045894	45894775	45895427	0.38	[{'connected_gene': 'SACM1L', 'score': 6.44}, {'connected_gene': 'GC03P045904', 'score': 0.44}, {'connected_gene': 'CCR9', 'score': 0.44}, {'connected_gene': 'LZTFL1', 'score': 0.34}]
chr3	GH03I045771	45771481	45777947	0.79	[{'connected_gene': 'SACM1L', 'score': 18.58}, {'connected_gene': 'RN7SL145P', 'score': 13.27}, {'connected_gene': 'SLC6A20', 'score': 12.19}, {'connected_gene': 'LZTFL1', 'score': 11.15}, {'connected_gene': 'SDHDP4', 'score': 10.16}, {'connected_gene': 'CCR9', 'score': 10.16}, {'connected_gene': 'LIMD1', 'score': 9.26}, {'connected_gene': 'CDCP1', 'score': 4.87}, {'connected_gene': 'GC03M045749', 'score': 0.34}]
chr3	GH03I045889	45889001	45889707	0.86	[{'connected_gene': 'CCR9', 'score': 7.37}, {'connected_gene': 'LIMD1', 'score': 4.92}, {'connected_gene': 'GC03P045904', 'score': 0.39}, {'connected_gene': 'LZTFL1', 'score': 0.31}]
chr3	GH03I045887	45887365	45888913	0.46	[{'connected_gene': 'CCR9', 'score': 550.77}, {'connected_gene': 'FYCO1', 'score': 14.58}, {'connected_gene': 'CXCR6', 'score': 6.78}, {'connected_gene': 'GC03P045904', 'score': 0.37}, {'connected_gene': 'LZTFL1', 'score': 0.31}]
chr3	GH03I045864	45864429	45866100	1.44	[{'connected_gene': 'CCR9', 'score': 55.57}, {'connected_gene': 'LZTFL1', 'score': 13.97}, {'connected_gene': 'FYCO1', 'score': 4.77}, {'connected_gene': 'EXOSC7', 'score': 4.31}, {'connected_gene': 'XCR1', 'score': 1.9}, {'connected_gene': 'GC03P045849', 'score': 0.37}, {'connected_gene': 'GC03M045883', 'score': 0.37}]
chr3	GH03I045871	45871801	45872200	0.74	[{'connected_gene': 'CCR9', 'score': 13.37}, {'connected_gene': 'LZTFL1', 'score': 11.4}, {'connected_gene': 'SACM1L', 'score': 6.19}, {'connected_gene': 'GC03M045883', 'score': 0.39}, {'connected_gene': 'GC03P045849', 'score': 0.34}]
chr3	GH03I045886	45886501	45886560	0.7	[{'connected_gene': 'CCR9', 'score': 550.77}, {'connected_gene': 'GC03P045904', 'score': 0.37}, {'connected_gene': 'LZTFL1', 'score': 0.31}]
chr3	GH03I045927	45927535	45928870	0.51	[{'connected_gene': 'CCR9', 'score': 10.37}, {'connected_gene': 'SDHDP4', 'score': 10.37}, {'connected_gene': 'CCR2', 'score': 9.2}, {'connected_gene': 'FYCO1', 'score': 4.94}, {'connected_gene': 'LZTFL1', 'score': 0.39}, {'connected_gene': 'CXCR6', 'score': 0.39}]
chr3	GH03I045929	45929169	45929318	0.85	[{'connected_gene': 'CCR9', 'score': 10.37}, {'connected_gene': 'SDHDP4', 'score': 10.35}, {'connected_gene': 'CCR2', 'score': 9.2}, {'connected_gene': 'LZTFL1', 'score': 0.39}, {'connected_gene': 'CXCR6', 'score': 0.39}, {'connected_gene': 'FYCO1', 'score': 0.2}]
chr3	GH03I045865	45864093	45864135	0.45	[{'connected_gene': 'CCR9', 'score': 11.66}, {'connected_gene': 'SDHDP4', 'score': 11.66}, {'connected_gene': 'LZTFL1', 'score': 11.61}, {'connected_gene': 'CCR1', 'score': 2.25}, {'connected_gene': 'GC03P045849', 'score': 0.39}, {'connected_gene': 'GC03M045883', 'score': 0.37}]
chr3	GH03I045909	45909669	45909818	0.76	[{'connected_gene': 'CCR9', 'score': 11.25}, {'connected_gene': 'SDHDP4', 'score': 11.23}, {'connected_gene': 'LZTFL1', 'score': 0.44}, {'connected_gene': 'ENSG00000201635', 'score': 0.44}]
chr3	GH03I045906	45906889	45908625	0.82	[{'connected_gene': 'CCR9', 'score': 11.91}, {'connected_gene': 'SDHDP4', 'score': 11.91}, {'connected_gene': 'CXCR6', 'score': 6.82}, {'connected_gene': 'FYCO1', 'score': 6.71}, {'connected_gene': 'SACM1L', 'score': 6.43}, {'connected_gene': 'ENSG00000201635', 'score': 0.77}, {'connected_gene': 'LZTFL1', 'score': 0.44}]
chr3	GH03I045966	45966974	45968888	0.51	[{'connected_gene': 'CXCR6', 'score': 31.88}, {'connected_gene': 'FYCO1', 'score': 16.87}, {'connected_gene': 'LZTFL1', 'score': 10.7}, {'connected_gene': 'CCR9', 'score': 9.57}, {'connected_gene': 'SDHDP4', 'score': 9.57}]
chr3	GH03I045895	45895615	45898984	0.52	[{'connected_gene': 'CXCR6', 'score': 6.96}, {'connected_gene': 'FYCO1', 'score': 6.72}, {'connected_gene': 'SACM1L', 'score': 6.44}, {'connected_gene': 'PTH1R', 'score': 5.81}, {'connected_gene': 'LOC102724297', 'score': 4.79}, {'connected_gene': 'GC03P045904', 'score': 0.44}, {'connected_gene': 'CCR9', 'score': 0.39}, {'connected_gene': 'LZTFL1', 'score': 0.37}]
chr3	GH03I045890	45890468	45891235	0.86	[{'connected_gene': 'CXCR6', 'score': 6.8}, {'connected_gene': 'FYCO1', 'score': 4.93}, {'connected_gene': 'CCR9', 'score': 0.77}, {'connected_gene': 'GC03P045904', 'score': 0.39}, {'connected_gene': 'LZTFL1', 'score': 0.31}]
chr3	GH03I045899	45899070	45900649	0.38	[{'connected_gene': 'CXCR6', 'score': 4.59}, {'connected_gene': 'FYCO1', 'score': 4.58}, {'connected_gene': 'GC03P045904', 'score': 0.77}, {'connected_gene': 'CCR9', 'score': 0.39}, {'connected_gene': 'LZTFL1', 'score': 0.37}]
chr3	GH03I045782	45782899	45784575	0.58	[{'connected_gene': 'CXCR6', 'score': 10.27}, {'connected_gene': 'LZTFL1', 'score': 10.2}, {'connected_gene': 'CCR9', 'score': 10.18}, {'connected_gene': 'SDHDP4', 'score': 10.18}, {'connected_gene': 'LIMD1', 'score': 9.67}, {'connected_gene': 'SLC6A20', 'score': 0.39}, {'connected_gene': 'GC03M045749', 'score': 0.29}]
chr3	GH03I045969	45969295	45970838	0.2	[{'connected_gene': 'CXCR6', 'score': 20.54}, {'connected_gene': 'LZTFL1', 'score': 10.54}, {'connected_gene': 'CCR9', 'score': 9.41}, {'connected_gene': 'SDHDP4', 'score': 9.4}, {'connected_gene': 'FYCO1', 'score': 0.31}]
chr3	GH03I045961	45961761	45963018	0.57	[{'connected_gene': 'CXCR6', 'score': 29.98}, {'connected_gene': 'LZTFL1', 'score': 11.09}, {'connected_gene': 'CCR9', 'score': 10.33}, {'connected_gene': 'SDHDP4', 'score': 10.33}, {'connected_gene': 'FYCO1', 'score': 0.29}]
chr3	GH03I045837	45837840	45839189	0.46	[{'connected_gene': 'CXCR6', 'score': 10.65}, {'connected_gene': 'LZTFL1', 'score': 10.6}, {'connected_gene': 'CCR9', 'score': 10.4}, {'connected_gene': 'SDHDP4', 'score': 10.4}, {'connected_gene': 'SLC6A20', 'score': 5.58}, {'connected_gene': 'FYCO1', 'score': 4.76}, {'connected_gene': 'GC03P045849', 'score': 0.39}, {'connected_gene': 'PIR58059', 'score': 0.39}]
chr3	GH03I045893	45893347	45894773	0.31	[{'connected_gene': 'CXCR6', 'score': 11.64}, {'connected_gene': 'SACM1L', 'score': 6.44}, {'connected_gene': 'FYCO1', 'score': 4.16}, {'connected_gene': 'GC03P045904', 'score': 0.44}, {'connected_gene': 'CCR9', 'score': 0.44}, {'connected_gene': 'LZTFL1', 'score': 0.34}]
chr3	GH03I045891	45891467	45892189	0.31	[{'connected_gene': 'CXCR6', 'score': 6.8}, {'connected_gene': 'CCR9', 'score': 0.44}, {'connected_gene': 'GC03P045904', 'score': 0.39}, {'connected_gene': 'LZTFL1', 'score': 0.34}]
chr3	GH03I045912	45912018	45912309	0.62	[{'connected_gene': 'CXCR6', 'score': 10.85}, {'connected_gene': 'CCR9', 'score': 10.84}, {'connected_gene': 'SDHDP4', 'score': 10.84}, {'connected_gene': 'SACM1L', 'score': 2.47}, {'connected_gene': 'FYCO1', 'score': 1.26}, {'connected_gene': 'LZTFL1', 'score': 0.77}, {'connected_gene': 'ENSG00000201635', 'score': 0.44}]
chr3	GH03I045956	45956363	45957027	0.63	[{'connected_gene': 'RN7SL145P', 'score': 28.89}, {'connected_gene': 'LZTFL1', 'score': 10.73}, {'connected_gene': 'CCR9', 'score': 9.77}, {'connected_gene': 'SDHDP4', 'score': 9.77}, {'connected_gene': 'CCR2', 'score': 9.4}, {'connected_gene': 'CXCR6', 'score': 5.43}, {'connected_gene': 'FYCO1', 'score': 0.28}]
chr3	GH03I045740	45740497	45743002	0.49	[{'connected_gene': 'RN7SL145P', 'score': 550.77}, {'connected_gene': 'SACM1L', 'score': 38.94}, {'connected_gene': 'LIMD1-AS1', 'score': 10.99}, {'connected_gene': 'LZTFL1', 'score': 10.93}, {'connected_gene': 'CCR9', 'score': 9.73}, {'connected_gene': 'SDHDP4', 'score': 9.73}, {'connected_gene': 'LIMD1', 'score': 9.45}]
chr3	GH03I045901	45901799	45903612	0.31	[{'connected_gene': 'GC03P045904', 'score': 550.77}, {'connected_gene': 'ENSG00000201635', 'score': 550.77}, {'connected_gene': 'LIMD1', 'score': 4.98}, {'connected_gene': 'LZTFL1', 'score': 0.39}, {'connected_gene': 'CCR9', 'score': 0.37}]
chr3	GH03I045847	45847029	45848843	0.2	[{'connected_gene': 'GC03P045849', 'score': 550.77}, {'connected_gene': 'LZTFL1', 'score': 11.2}, {'connected_gene': 'CCR9', 'score': 11.06}, {'connected_gene': 'SDHDP4', 'score': 11.06}, {'connected_gene': 'SLC6A20', 'score': 5.56}, {'connected_gene': 'CXCR6', 'score': 5.36}, {'connected_gene': 'PIR58059', 'score': 0.34}]
chr3	GH03I045826	45826691	45827554	0.31	[{'connected_gene': 'PIR58059', 'score': 550.77}, {'connected_gene': 'LZTFL1', 'score': 10.81}, {'connected_gene': 'CCR9', 'score': 10.4}, {'connected_gene': 'SDHDP4', 'score': 10.4}, {'connected_gene': 'GC03P045849', 'score': 0.34}]
chr3	GH03I045883	45883554	45884955	0.68	[{'connected_gene': 'GC03M045883', 'score': 550.77}, {'connected_gene': 'SDHDP4', 'score': 550.77}, {'connected_gene': 'SACM1L', 'score': 6.44}, {'connected_gene': 'CCR9', 'score': 0.77}, {'connected_gene': 'LZTFL1', 'score': 0.29}]