PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366882	[[165740775, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [165989899, 165989937], [166075434, 166075588]]	[[165746513, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056]]
ENST00000354448	[[165740777, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [165989899, 165989936]]	[[165746513, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [165989899, 165989936]]
ENST00000539869	[[165744538, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [166075434, 166075557]]	[[165746513, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [166075434, 166075501]]
ENST00000580695	[[165957020, 165957056], [166399595, 166400091]]	None
ENST00000535229	[[166193756, 166195411], [166399595, 166399984]]	None
NM_006661	[[165740775, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [165989899, 165990027], [166075434, 166075588]]	[[165746513, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [165989899, 165989936]]
NM_001130690	[[165740775, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [166075434, 166075588]]	[[165746513, 165746616], [165749611, 165749700], [165752766, 165752847], [165756879, 165756991], [165792682, 165792855], [165801786, 165801942], [165806134, 165806285], [165808669, 165808753], [165809805, 165809948], [165826988, 165827175], [165829676, 165829769], [165832122, 165832265], [165842145, 165842197], [165843774, 165843833], [165844909, 165844960], [165846461, 165846617], [165848724, 165848865], [165862415, 165862465], [165863729, 165863850], [165895802, 165895831], [165956927, 165957056], [166075434, 166075501]]

Promoter

Chrom	Start	End	Description
chr6	165990105	165990115	CAGE_peak_10_at_PDE10A_5end
chr6	165990158	165990169	CAGE_peak_12_at_PDE10A_5end
chr6	166075754	166075776	CAGE_peak_2_at_PDE10A_5end
chr6	166076038	166076072	CAGE_peak_1_at_PDE10A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I165983	165983082	165989567	1.66	[{'connected_gene': 'LINC00602', 'score': 550.77}, {'connected_gene': 'LINC00473', 'score': 550.77}, {'connected_gene': 'PDE10A', 'score': 550.77}, {'connected_gene': 'GC06M165803', 'score': 0.11}]
chr6	GH06I165972	165972523	165972866	0.45	[{'connected_gene': 'PDE10A', 'score': 0.39}, {'connected_gene': 'LINC00473', 'score': 0.37}, {'connected_gene': 'GC06M165803', 'score': 0.12}]
chr6	GH06I165570	165570607	165578279	1.37	[{'connected_gene': 'PDE10A', 'score': 10.46}, {'connected_gene': 'RNU6-730P', 'score': 9.99}, {'connected_gene': 'GC06P165548', 'score': 0.31}, {'connected_gene': 'LOC105378115', 'score': 0.16}]
chr6	GH06I165632	165632413	165632562	0.43	[{'connected_gene': 'PDE10A', 'score': 11.7}, {'connected_gene': 'RNU6-730P', 'score': 10.51}, {'connected_gene': 'LOC105378115', 'score': 0.28}, {'connected_gene': 'GC06P165548', 'score': 0.18}]
chr6	GH06I165606	165606553	165606702	0.31	[{'connected_gene': 'PDE10A', 'score': 10.52}, {'connected_gene': 'RNU6-730P', 'score': 10.36}, {'connected_gene': 'GC06P165548', 'score': 0.22}, {'connected_gene': 'LOC105378115', 'score': 0.21}]
chr6	GH06I165635	165635401	165638432	0.66	[{'connected_gene': 'PDE10A', 'score': 24.8}, {'connected_gene': 'RNU6-730P', 'score': 10.52}, {'connected_gene': 'LOC105378115', 'score': 0.29}, {'connected_gene': 'GC06P165548', 'score': 0.17}]
chr6	GH06I165701	165701133	165701302	0.31	[{'connected_gene': 'PDE10A', 'score': 11.06}, {'connected_gene': 'GC06M165719', 'score': 0.37}, {'connected_gene': 'RNU6-730P', 'score': 0.37}, {'connected_gene': 'LOC105378115', 'score': 0.29}]
chr6	GH06I165633	165633973	165635228	0.31	[{'connected_gene': 'PDE10A', 'score': 11.7}, {'connected_gene': 'RNU6-730P', 'score': 10.52}, {'connected_gene': 'LOC105378115', 'score': 0.29}, {'connected_gene': 'GC06P165548', 'score': 0.17}]
chr6	GH06I165702	165701975	165702328	0.5	[{'connected_gene': 'PDE10A', 'score': 11.06}, {'connected_gene': 'GC06M165719', 'score': 0.37}, {'connected_gene': 'RNU6-730P', 'score': 0.37}, {'connected_gene': 'LOC105378115', 'score': 0.29}]
chr6	GH06I165660	165660570	165664510	2.16	[{'connected_gene': 'PDE10A', 'score': 557.99}, {'connected_gene': 'LOC105378115', 'score': 0.44}, {'connected_gene': 'GC06P165548', 'score': 0.14}]
chr6	GH06I165920	165920999	165923156	0.56	[{'connected_gene': 'RNU6-730P', 'score': 9.0}, {'connected_gene': 'PDE10A', 'score': 0.21}, {'connected_gene': 'LINC00473', 'score': 0.2}, {'connected_gene': 'GC06M165803', 'score': 0.18}]
chr6	GH06I165648	165648808	165650441	0.78	[{'connected_gene': 'RNU6-730P', 'score': 10.23}, {'connected_gene': 'PDE10A', 'score': 5.3}, {'connected_gene': 'LOC105378115', 'score': 0.37}, {'connected_gene': 'GC06P165548', 'score': 0.15}]
chr6	GH06I165551	165551918	165553128	0.38	[{'connected_gene': 'RNU6-730P', 'score': 9.58}, {'connected_gene': 'GC06P165548', 'score': 0.77}, {'connected_gene': 'LOC105378115', 'score': 0.13}, {'connected_gene': 'PDE10A', 'score': 0.04}]
chr6	GH06I165647	165647201	165647400	0.43	[{'connected_gene': 'RNU6-730P', 'score': 9.89}, {'connected_gene': 'LOC105378115', 'score': 0.34}, {'connected_gene': 'GC06P165548', 'score': 0.15}, {'connected_gene': 'PDE10A', 'score': 0.05}]
chr6	GH06I165799	165799873	165800022	0.2	[{'connected_gene': 'RNU6-730P', 'score': 10.19}, {'connected_gene': 'GC06M165776', 'score': 0.44}, {'connected_gene': 'GC06M165797', 'score': 0.39}, {'connected_gene': 'LOC105378114', 'score': 0.34}, {'connected_gene': 'PDE10A', 'score': 0.09}]
chr6	GH06I165615	165615223	165617234	0.72	[{'connected_gene': 'LOC105378115', 'score': 0.23}, {'connected_gene': 'GC06P165548', 'score': 0.2}, {'connected_gene': 'PDE10A', 'score': 0.05}]
chr6	GH06I165774	165774647	165775956	0.89	[{'connected_gene': 'LOC105378114', 'score': 550.77}, {'connected_gene': 'PDE10A', 'score': 10.47}, {'connected_gene': 'ENSG00000236627', 'score': 0.34}]
chr6	GH06I165951	165951426	165951679	0.23	[{'connected_gene': 'TBXT', 'score': 1.44}, {'connected_gene': 'LINC00473', 'score': 0.28}, {'connected_gene': 'PDE10A', 'score': 0.28}, {'connected_gene': 'GC06M165803', 'score': 0.14}]
chr6	GH06I165468	165468813	165468962	0.31	[{'connected_gene': 'PIR57945', 'score': 0.44}, {'connected_gene': 'GC06P165548', 'score': 0.18}, {'connected_gene': 'PDE10A', 'score': 0.03}]
chr6	GH06I165880	165880692	165881189	0.2	[{'connected_gene': 'ENSG00000231297', 'score': 12.06}, {'connected_gene': 'GC06M165803', 'score': 0.28}, {'connected_gene': 'PDE10A', 'score': 0.14}]
chr6	GH06I165818	165818333	165818482	0.2	[{'connected_gene': 'GC06M165797', 'score': 0.44}, {'connected_gene': 'GC06P165832', 'score': 0.39}, {'connected_gene': 'GC06M165803', 'score': 0.34}, {'connected_gene': 'PDE10A', 'score': 0.1}]
chr6	GH06I165842	165842353	165842562	0.46	[{'connected_gene': 'GC06M165803', 'score': 550.77}, {'connected_gene': 'ENSG00000231297', 'score': 10.64}, {'connected_gene': 'PDE10A', 'score': 0.11}]
chr6	GH06I165876	165876294	165877384	0.38	[{'connected_gene': 'ENSG00000231297', 'score': 12.06}, {'connected_gene': 'GC06M165803', 'score': 0.28}, {'connected_gene': 'PDE10A', 'score': 0.14}]
chr6	GH06I165844	165843213	165843362	0.54	[{'connected_gene': 'ENSG00000231297', 'score': 10.64}, {'connected_gene': 'GC06M165803', 'score': 0.77}, {'connected_gene': 'PDE10A', 'score': 0.11}]
chr6	GH06I165834	165834713	165834862	0.74	[{'connected_gene': 'GC06P165832', 'score': 0.77}, {'connected_gene': 'GC06M165803', 'score': 0.44}, {'connected_gene': 'PDE10A', 'score': 0.1}]
chr6	GH06I165843	165843193	165843196	0.52	[{'connected_gene': 'ENSG00000231297', 'score': 10.64}, {'connected_gene': 'GC06M165803', 'score': 0.77}, {'connected_gene': 'PDE10A', 'score': 0.11}]
chr6	GH06I165423	165423849	165423859	0.25	[{'connected_gene': 'GC06P165418', 'score': 0.44}, {'connected_gene': 'PIR57945', 'score': 0.28}, {'connected_gene': 'PDE10A', 'score': 0.03}]
chr6	GH06I165469	165468613	165468762	0.2	[{'connected_gene': 'PIR57945', 'score': 0.44}, {'connected_gene': 'GC06P165548', 'score': 0.18}, {'connected_gene': 'PDE10A', 'score': 0.03}]
chr6	GH06I165497	165497593	165497702	0.71	[{'connected_gene': 'PIR57945', 'score': 0.28}, {'connected_gene': 'GC06P165548', 'score': 0.23}, {'connected_gene': 'PDE10A', 'score': 0.04}]
chr6	GH06I165890	165890193	165890342	0.66	[{'connected_gene': 'GC06M165803', 'score': 0.25}, {'connected_gene': 'PDE10A', 'score': 0.15}]
chr6	GH06I165516	165516353	165516482	0.67	[{'connected_gene': 'GC06P165548', 'score': 0.29}, {'connected_gene': 'PIR57945', 'score': 0.23}, {'connected_gene': 'PDE10A', 'score': 0.04}]
chr6	GH06I165885	165885213	165885362	0.63	[{'connected_gene': 'ENSG00000231297', 'score': 11.78}, {'connected_gene': 'GC06M165803', 'score': 0.26}, {'connected_gene': 'PDE10A', 'score': 0.15}]
chr6	GH06I165884	165884953	165885142	0.68	[{'connected_gene': 'ENSG00000231297', 'score': 11.78}, {'connected_gene': 'GC06M165803', 'score': 0.26}, {'connected_gene': 'PDE10A', 'score': 0.15}]
chr6	GH06I165717	165717452	165719382	0.63	[{'connected_gene': 'GC06M165719', 'score': 550.77}, {'connected_gene': 'RNU6-730P', 'score': 550.77}, {'connected_gene': 'GC06P165733', 'score': 0.37}, {'connected_gene': 'PDE10A', 'score': 0.06}]
chr6	GH06I165847	165847573	165847722	0.77	[{'connected_gene': 'ENSG00000231297', 'score': 10.24}, {'connected_gene': 'RNU6-730P', 'score': 10.07}, {'connected_gene': 'GC06M165803', 'score': 0.44}, {'connected_gene': 'PDE10A', 'score': 0.12}]
chr6	GH06I165584	165584076	165585791	0.38	[{'connected_gene': 'GC06P165548', 'score': 0.28}, {'connected_gene': 'LOC105378115', 'score': 0.18}, {'connected_gene': 'PDE10A', 'score': 0.05}]
chr6	GH06I165556	165556150	165557181	0.72	[{'connected_gene': 'GC06P165548', 'score': 0.44}, {'connected_gene': 'LOC105378115', 'score': 0.14}, {'connected_gene': 'PDE10A', 'score': 0.04}]
chr6	GH06I165804	165804395	165805835	0.31	[{'connected_gene': 'GC06M165776', 'score': 550.77}, {'connected_gene': 'GC06M165797', 'score': 0.44}, {'connected_gene': 'LOC105378114', 'score': 0.31}, {'connected_gene': 'GC06M165803', 'score': 0.28}, {'connected_gene': 'PDE10A', 'score': 0.09}]