PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000511469	[[56461395, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56496568, 56496627], [56502247, 56502451]]	[[56465312, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56496568, 56496627], [56502247, 56502359]]
ENST00000264218	[[56461397, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502465]]	[[56465312, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502359]]
ENST00000505262	[[56461400, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502426]]	[[56465312, 56465348], [56466688, 56466742], [56471441, 56471516], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502359]]
ENST00000507338	[[56461450, 56461578], [56465308, 56465348], [56466688, 56466742], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502435]]	[[56465312, 56465348], [56466688, 56466742], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502359]]
ENST00000515325	[[56461483, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502710, 56502865]]	None
ENST00000509371	[[56465318, 56465348], [56466688, 56466742], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496629]]	None
NM_006681	[[56461395, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502465]]	[[56465312, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502359]]
NM_001292046	[[56461395, 56461578], [56465308, 56465348], [56466688, 56466742], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502465]]	[[56465312, 56465348], [56466688, 56466742], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502247, 56502359]]
NM_001292045	[[56461395, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56496568, 56496627], [56502247, 56502465]]	[[56465312, 56465348], [56466688, 56466742], [56471441, 56471516], [56473464, 56473515], [56473603, 56473633], [56475286, 56475346], [56496568, 56496627], [56502247, 56502359]]
NR_120489	[[56461395, 56461578], [56465308, 56465348], [56466688, 56466742], [56471441, 56471516], [56473603, 56473633], [56475286, 56475346], [56482504, 56482552], [56496568, 56496627], [56502710, 56502865]]	None

Promoter

Chrom	Start	End	Description
chr4	56502429	56502440	CAGE_peak_3_at_NMU_5end
chr4	56502455	56502471	CAGE_peak_1_at_NMU_5end
chr4	56502502	56502513	CAGE_peak_2_at_NMU_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I055447	55447201	55447400	0.2	[{'connected_gene': 'CLOCK', 'score': 10.74}, {'connected_gene': 'NMU', 'score': 9.98}, {'connected_gene': 'TMEM165', 'score': 9.24}, {'connected_gene': 'PIR52615', 'score': 0.37}, {'connected_gene': 'GC04M055433', 'score': 0.37}, {'connected_gene': 'ENSG00000238585', 'score': 0.23}, {'connected_gene': 'GC04M055502', 'score': 0.23}]
chr4	GH04I055543	55543989	55548764	2.06	[{'connected_gene': 'CLOCK', 'score': 559.76}, {'connected_gene': 'ENSG00000272969', 'score': 558.14}, {'connected_gene': 'RN7SKP30', 'score': 46.4}, {'connected_gene': 'TMEM165', 'score': 28.16}, {'connected_gene': 'CEP135', 'score': 14.64}, {'connected_gene': 'AASDH', 'score': 13.03}, {'connected_gene': 'SRP72', 'score': 12.42}, {'connected_gene': 'NMU', 'score': 10.55}, {'connected_gene': 'SRD5A3', 'score': 7.48}]
chr4	GH04I055553	55553001	55554200	0.69	[{'connected_gene': 'TMEM165', 'score': 28.16}, {'connected_gene': 'NMU', 'score': 10.07}, {'connected_gene': 'CLOCK', 'score': 9.41}, {'connected_gene': 'PDCL2', 'score': 0.28}]
chr4	GH04I055548	55548897	55551176	0.74	[{'connected_gene': 'TMEM165', 'score': 27.82}, {'connected_gene': 'NMU', 'score': 20.46}, {'connected_gene': 'CLOCK', 'score': 9.77}, {'connected_gene': 'ENSG00000272969', 'score': 8.08}, {'connected_gene': 'SRD5A3-AS1', 'score': 7.54}, {'connected_gene': 'PDCL2', 'score': 0.26}]
chr4	GH04I055434	55434594	55435954	0.57	[{'connected_gene': 'TMEM165', 'score': 28.83}, {'connected_gene': 'NMU', 'score': 9.98}, {'connected_gene': 'CLOCK', 'score': 9.25}, {'connected_gene': 'PIR52615', 'score': 0.77}, {'connected_gene': 'GC04M055433', 'score': 0.77}, {'connected_gene': 'ENSG00000238585', 'score': 0.2}, {'connected_gene': 'GC04M055502', 'score': 0.2}]
chr4	GH04I055381	55381107	55382343	0.49	[{'connected_gene': 'TMEM165', 'score': 17.0}, {'connected_gene': 'NMU', 'score': 9.08}, {'connected_gene': 'LOC105377659', 'score': 0.77}, {'connected_gene': 'ENSG00000273257', 'score': 0.44}, {'connected_gene': 'SRD5A3-AS1', 'score': 0.39}]
chr4	GH04I055394	55394962	55399618	2.27	[{'connected_gene': 'TMEM165', 'score': 567.86}, {'connected_gene': 'GC04P055398', 'score': 550.77}, {'connected_gene': 'SRD5A3-AS1', 'score': 550.77}, {'connected_gene': 'CEP135', 'score': 20.49}, {'connected_gene': 'RN7SKP30', 'score': 16.57}, {'connected_gene': 'CLOCK', 'score': 15.14}, {'connected_gene': 'AASDH', 'score': 12.28}, {'connected_gene': 'SRD5A3', 'score': 11.84}, {'connected_gene': 'NMU', 'score': 9.93}, {'connected_gene': 'ENSG00000272969', 'score': 7.53}]
chr4	GH04I055357	55357974	55360002	1.17	[{'connected_gene': 'TMEM165', 'score': 16.01}, {'connected_gene': 'SRD5A3-AS1', 'score': 12.96}, {'connected_gene': 'NMU', 'score': 7.7}, {'connected_gene': 'CLOCK', 'score': 4.42}, {'connected_gene': 'PIR32131', 'score': 0.44}, {'connected_gene': 'SRD5A3', 'score': 0.39}, {'connected_gene': 'LOC105377659', 'score': 0.37}]
chr4	GH04I055592	55592137	55592196	0.79	[{'connected_gene': 'PDCL2', 'score': 550.77}, {'connected_gene': 'NMU', 'score': 17.07}, {'connected_gene': 'CLOCK', 'score': 0.25}]
chr4	GH04I055635	55635801	55637000	1.57	[{'connected_gene': 'NMU', 'score': 550.77}, {'connected_gene': 'SRP72', 'score': 14.75}, {'connected_gene': 'CEP135', 'score': 12.53}, {'connected_gene': 'SRD5A3', 'score': 9.04}, {'connected_gene': 'PDCL2', 'score': 0.26}]
chr4	GH04I055611	55611848	55612768	0.46	[{'connected_gene': 'NMU', 'score': 28.72}, {'connected_gene': 'TMEM165', 'score': 18.67}, {'connected_gene': 'SRD5A3', 'score': 5.41}, {'connected_gene': 'PDCL2', 'score': 0.34}]
chr4	GH04I055608	55608386	55611615	0.31	[{'connected_gene': 'NMU', 'score': 28.71}, {'connected_gene': 'TMEM165', 'score': 25.17}, {'connected_gene': 'KDR', 'score': 9.42}, {'connected_gene': 'SRD5A3', 'score': 5.69}, {'connected_gene': 'PDCL2', 'score': 0.37}]
chr4	GH04I055421	55421419	55422664	0.46	[{'connected_gene': 'NMU', 'score': 9.97}, {'connected_gene': 'TMEM165', 'score': 9.43}, {'connected_gene': 'RN7SKP30', 'score': 8.47}, {'connected_gene': 'PIR45008', 'score': 0.44}, {'connected_gene': 'ENSG00000239040', 'score': 0.44}]
chr4	GH04I055637	55637054	55638412	0.8	[{'connected_gene': 'NMU', 'score': 570.47}, {'connected_gene': 'TMEM165', 'score': 5.62}, {'connected_gene': 'LOC105377660', 'score': 0.37}]
chr4	GH04I055733	55733454	55734869	0.76	[{'connected_gene': 'NMU', 'score': 10.18}, {'connected_gene': 'RNU6-276P', 'score': 0.21}, {'connected_gene': 'LOC105377660', 'score': 0.18}]
chr4	GH04I055754	55754365	55756095	0.49	[{'connected_gene': 'NMU', 'score': 9.97}, {'connected_gene': 'RNU6-276P', 'score': 0.26}, {'connected_gene': 'LOC105377660', 'score': 0.15}]
chr4	GH04I055420	55420174	55420961	0.2	[{'connected_gene': 'NMU', 'score': 9.18}, {'connected_gene': 'ENSG00000272969', 'score': 5.04}, {'connected_gene': 'SRD5A3-AS1', 'score': 4.7}, {'connected_gene': 'PIR45008', 'score': 0.44}, {'connected_gene': 'ENSG00000239040', 'score': 0.44}, {'connected_gene': 'TMEM165', 'score': 0.34}]
chr4	GH04I054957	54957757	54960849	0.31	[{'connected_gene': 'NMU', 'score': 9.22}, {'connected_gene': 'GC04M054977', 'score': 0.37}, {'connected_gene': 'ENSG00000248317', 'score': 0.37}, {'connected_gene': 'GC04P054944', 'score': 0.37}]
chr4	GH04I055378	55378649	55379823	0.66	[{'connected_gene': 'LOC105377659', 'score': 550.77}, {'connected_gene': 'TMEM165', 'score': 10.33}, {'connected_gene': 'NMU', 'score': 9.08}, {'connected_gene': 'CLOCK', 'score': 8.15}, {'connected_gene': 'ENSG00000273257', 'score': 0.44}, {'connected_gene': 'SRD5A3-AS1', 'score': 0.37}]
chr4	GH04I055386	55386158	55388322	1.16	[{'connected_gene': 'ENSG00000273257', 'score': 550.77}, {'connected_gene': 'TMEM165', 'score': 33.63}, {'connected_gene': 'ENSG00000272969', 'score': 9.31}, {'connected_gene': 'NMU', 'score': 9.08}, {'connected_gene': 'SRD5A3-AS1', 'score': 4.89}, {'connected_gene': 'LOC105377659', 'score': 0.44}]
chr4	GH04I055502	55502859	55503958	0.59	[{'connected_gene': 'ENSG00000238585', 'score': 550.77}, {'connected_gene': 'GC04M055502', 'score': 550.77}, {'connected_gene': 'NMU', 'score': 10.01}, {'connected_gene': 'CLOCK', 'score': 9.24}, {'connected_gene': 'RN7SKP30', 'score': 0.28}]