PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000495146	[[26256975, 26257604], [26321530, 26321591], [26350012, 26350102], [26350718, 26350820], [26357806, 26358216]]	None
ENST00000264710	[[26256978, 26257604], [26321530, 26321591], [26332636, 26332775], [26350012, 26350102], [26350718, 26350820], [26357806, 26360323]]	[[26257477, 26257604], [26321530, 26321591], [26332636, 26332775], [26350012, 26350102], [26350718, 26350820], [26357806, 26357890]]
ENST00000462003	[[26321398, 26321446], [26321530, 26321591], [26332636, 26332775], [26350012, 26350147], [26350718, 26350820], [26357806, 26357905]]	None
ENST00000473035	[[26321398, 26321446], [26321530, 26321591], [26332636, 26332775], [26350012, 26350102], [26350718, 26350820], [26357806, 26357937]]	None
NM_016131	[[26256728, 26257604], [26321530, 26321591], [26332636, 26332775], [26350012, 26350102], [26350718, 26350820], [26357806, 26360323]]	[[26257477, 26257604], [26321530, 26321591], [26332636, 26332775], [26350012, 26350102], [26350718, 26350820], [26357806, 26357890]]

Promoter

Chrom	Start	End	Description
chr2	26256938	26257031	CAGE_peak_1_at_RAB10_5end
chr2	26257054	26257071	CAGE_peak_2_at_RAB10_5end
chr2	26257206	26257229	CAGE_peak_5_at_RAB10_5end
chr2	26257234	26257336	CAGE_peak_3_at_RAB10_5end
chr2	26257346	26257357	CAGE_peak_15_at_RAB10_5end
chr2	26257462	26257473	CAGE_peak_9_at_RAB10_5end
chr2	26257526	26257548	CAGE_peak_6_at_RAB10_5end
chr2	26357851	26357949	CAGE_peak_4_at_RAB10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I026493	26493537	26493898	0.64	[{'connected_gene': 'OTOF', 'score': 17.16}, {'connected_gene': 'C2orf70', 'score': 11.3}, {'connected_gene': 'RAB10', 'score': 5.89}, {'connected_gene': 'GAREM2', 'score': 1.98}, {'connected_gene': 'DRC1', 'score': 0.16}]
chr2	GH02I026410	26410650	26413183	1.46	[{'connected_gene': 'ATRAID', 'score': 11.99}, {'connected_gene': 'HADHA', 'score': 10.37}, {'connected_gene': 'OST4', 'score': 10.03}, {'connected_gene': 'RAB10', 'score': 8.67}, {'connected_gene': 'SELENOI', 'score': 7.09}, {'connected_gene': 'DRC1', 'score': 6.11}, {'connected_gene': 'ADGRF3', 'score': 4.43}, {'connected_gene': 'CENPA', 'score': 4.38}, {'connected_gene': 'OTOF', 'score': 0.11}]
chr2	GH02I026052	26052058	26053788	0.38	[{'connected_gene': 'KIF3C', 'score': 10.86}, {'connected_gene': 'GAREM2', 'score': 9.19}, {'connected_gene': 'GC02P026059', 'score': 0.44}, {'connected_gene': 'LOC105374333', 'score': 0.44}, {'connected_gene': 'RAB10', 'score': 0.37}]
chr2	GH02I025920	25920472	25920621	0.49	[{'connected_gene': 'KIF3C', 'score': 11.17}, {'connected_gene': 'RAB10', 'score': 10.66}, {'connected_gene': 'RNU6-942P', 'score': 10.65}, {'connected_gene': 'NDUFB4P4', 'score': 0.29}]
chr2	GH02I025951	25951112	25951321	1.12	[{'connected_gene': 'KIF3C', 'score': 17.18}, {'connected_gene': 'RAB10', 'score': 11.01}, {'connected_gene': 'RNU6-942P', 'score': 10.99}, {'connected_gene': 'NDUFB4P4', 'score': 0.21}]
chr2	GH02I025916	25916372	25916910	0.66	[{'connected_gene': 'KIF3C', 'score': 19.95}, {'connected_gene': 'RNU6-942P', 'score': 10.65}, {'connected_gene': 'RAB10', 'score': 10.65}, {'connected_gene': 'NDUFB4P4', 'score': 0.31}]
chr2	GH02I025649	25649358	25652084	1.57	[{'connected_gene': 'DTNB', 'score': 567.74}, {'connected_gene': 'POMC', 'score': 9.9}, {'connected_gene': 'RAB10', 'score': 2.04}, {'connected_gene': 'GC02P025633', 'score': 0.37}]
chr2	GH02I026074	26074601	26075520	0.76	[{'connected_gene': 'GAREM2', 'score': 6.91}, {'connected_gene': 'GC02P026059', 'score': 0.37}, {'connected_gene': 'RPS2P15', 'score': 0.31}, {'connected_gene': 'LOC105374333', 'score': 0.31}, {'connected_gene': 'RAB10', 'score': 0.26}]
chr2	GH02I026081	26081401	26082200	0.58	[{'connected_gene': 'GAREM2', 'score': 6.83}, {'connected_gene': 'GC02P026059', 'score': 0.34}, {'connected_gene': 'RPS2P15', 'score': 0.34}, {'connected_gene': 'LOC105374333', 'score': 0.28}, {'connected_gene': 'RAB10', 'score': 0.25}]
chr2	GH02I026032	26032284	26036690	2.6	[{'connected_gene': 'RAB10', 'score': 565.24}, {'connected_gene': 'SLC35F6', 'score': 10.03}, {'connected_gene': 'GAREM2', 'score': 8.43}, {'connected_gene': 'GC02P026043', 'score': 0.44}]
chr2	GH02I025566	25566601	25567890	1.26	[{'connected_gene': 'RAB10', 'score': 1.71}, {'connected_gene': 'GC02P025633', 'score': 0.2}, {'connected_gene': 'GC02P025491', 'score': 0.18}, {'connected_gene': 'DTNB', 'score': 0.14}]
chr2	GH02I026382	26382671	26382958	0.37	[{'connected_gene': 'RAB10', 'score': 3.98}, {'connected_gene': 'GC02M026396', 'score': 0.39}, {'connected_gene': 'ADGRF3', 'score': 0.28}, {'connected_gene': 'SELENOI', 'score': 0.19}]
chr2	GH02I025999	25999803	26003999	1.52	[{'connected_gene': 'RAB10', 'score': 16.67}, {'connected_gene': 'RNU6-942P', 'score': 12.23}, {'connected_gene': 'ASXL2', 'score': 10.64}, {'connected_gene': 'DNMT3A', 'score': 9.93}, {'connected_gene': 'GAREM2', 'score': 6.01}, {'connected_gene': 'GC02P025994', 'score': 0.44}, {'connected_gene': 'GC02M025991', 'score': 0.31}, {'connected_gene': 'TRMT112P6', 'score': 0.31}]
chr2	GH02I026011	26011045	26014067	1.67	[{'connected_gene': 'RAB10', 'score': 17.16}, {'connected_gene': 'RNU6-942P', 'score': 12.76}, {'connected_gene': 'KIF3C', 'score': 11.33}, {'connected_gene': 'SLC35F6', 'score': 10.03}, {'connected_gene': 'GAREM2', 'score': 5.45}, {'connected_gene': 'GC02P025994', 'score': 0.37}, {'connected_gene': 'GC02M025991', 'score': 0.37}, {'connected_gene': 'TRMT112P6', 'score': 0.37}]
chr2	GH02I026007	26007602	26010399	1.46	[{'connected_gene': 'RAB10', 'score': 26.99}, {'connected_gene': 'RNU6-942P', 'score': 12.76}, {'connected_gene': 'KIF3C', 'score': 11.45}, {'connected_gene': 'GAREM2', 'score': 4.48}, {'connected_gene': 'GC02P025994', 'score': 0.39}, {'connected_gene': 'TRMT112P6', 'score': 0.37}, {'connected_gene': 'GC02M025991', 'score': 0.34}]
chr2	GH02I026066	26066938	26070693	1.62	[{'connected_gene': 'RAB10', 'score': 24.14}, {'connected_gene': 'RNU6-942P', 'score': 12.43}, {'connected_gene': 'KIF3C', 'score': 10.71}, {'connected_gene': 'GAREM2', 'score': 9.36}, {'connected_gene': 'HADHB', 'score': 5.74}, {'connected_gene': 'GC02P026059', 'score': 0.44}, {'connected_gene': 'LOC105374333', 'score': 0.34}, {'connected_gene': 'RPS2P15', 'score': 0.29}]
chr2	GH02I026105	26105690	26105943	0.22	[{'connected_gene': 'RAB10', 'score': 13.86}, {'connected_gene': 'RNU6-942P', 'score': 11.29}, {'connected_gene': 'KIF3C', 'score': 10.92}, {'connected_gene': 'GAREM2', 'score': 7.17}, {'connected_gene': 'RPS2P15', 'score': 0.77}, {'connected_gene': 'LOC391359', 'score': 0.28}, {'connected_gene': 'GC02P026059', 'score': 0.25}]
chr2	GH02I025991	25991172	25992396	1.41	[{'connected_gene': 'RAB10', 'score': 12.27}, {'connected_gene': 'RNU6-942P', 'score': 12.24}, {'connected_gene': 'DNMT3A', 'score': 12.13}, {'connected_gene': 'UQCRHP2', 'score': 0.77}, {'connected_gene': 'KIF3C', 'score': 0.44}, {'connected_gene': 'GC02M025991', 'score': 0.28}]
chr2	GH02I025997	25997401	25999000	1.73	[{'connected_gene': 'RAB10', 'score': 28.49}, {'connected_gene': 'RNU6-942P', 'score': 12.23}, {'connected_gene': 'DNMT3A', 'score': 12.13}, {'connected_gene': 'GAREM2', 'score': 4.89}, {'connected_gene': 'GC02P025994', 'score': 0.77}, {'connected_gene': 'TRMT112P6', 'score': 0.29}, {'connected_gene': 'GC02M025991', 'score': 0.29}]
chr2	GH02I026008	26007001	26007200	0.4	[{'connected_gene': 'RAB10', 'score': 12.23}, {'connected_gene': 'RNU6-942P', 'score': 12.19}, {'connected_gene': 'GAREM2', 'score': 4.48}, {'connected_gene': 'GC02P025994', 'score': 0.39}, {'connected_gene': 'TRMT112P6', 'score': 0.34}, {'connected_gene': 'GC02M025991', 'score': 0.34}]
chr2	GH02I026143	26143632	26145392	0.97	[{'connected_gene': 'RNU6-942P', 'score': 11.12}, {'connected_gene': 'KIF3C', 'score': 11.12}, {'connected_gene': 'RAB10', 'score': 11.11}, {'connected_gene': 'HADHB', 'score': 10.55}, {'connected_gene': 'HADHA', 'score': 10.54}, {'connected_gene': 'GAREM2', 'score': 8.05}, {'connected_gene': 'SMARCE1P6', 'score': 0.77}, {'connected_gene': 'LOC391359', 'score': 0.77}, {'connected_gene': 'GC02P026059', 'score': 0.17}]
chr2	GH02I026016	26016106	26017219	0.94	[{'connected_gene': 'RNU6-942P', 'score': 11.59}, {'connected_gene': 'KIF3C', 'score': 11.31}, {'connected_gene': 'RAB10', 'score': 5.9}, {'connected_gene': 'GAREM2', 'score': 4.48}, {'connected_gene': 'TRMT112P6', 'score': 0.39}, {'connected_gene': 'GC02M025991', 'score': 0.39}, {'connected_gene': 'GC02P025994', 'score': 0.34}]
chr2	GH02I026017	26017228	26019557	1.65	[{'connected_gene': 'RNU6-942P', 'score': 12.41}, {'connected_gene': 'KIF3C', 'score': 11.22}, {'connected_gene': 'RAB10', 'score': 8.63}, {'connected_gene': 'GAREM2', 'score': 7.51}, {'connected_gene': 'TRMT112P6', 'score': 0.39}, {'connected_gene': 'GC02M025991', 'score': 0.39}, {'connected_gene': 'GC02P025994', 'score': 0.34}]
chr2	GH02I026092	26092019	26093187	0.38	[{'connected_gene': 'RNU6-942P', 'score': 11.57}, {'connected_gene': 'RAB10', 'score': 11.55}, {'connected_gene': 'KIF3C', 'score': 11.03}, {'connected_gene': 'GAREM2', 'score': 7.25}, {'connected_gene': 'RPS2P15', 'score': 0.44}, {'connected_gene': 'GC02P026059', 'score': 0.29}, {'connected_gene': 'LOC105374333', 'score': 0.25}]
chr2	GH02I026086	26086030	26087061	1.09	[{'connected_gene': 'RNU6-942P', 'score': 11.96}, {'connected_gene': 'RAB10', 'score': 11.93}, {'connected_gene': 'KIF3C', 'score': 10.59}, {'connected_gene': 'GAREM2', 'score': 7.24}, {'connected_gene': 'RPS2P15', 'score': 0.37}, {'connected_gene': 'GC02P026059', 'score': 0.31}, {'connected_gene': 'LOC105374333', 'score': 0.26}]
chr2	GH02I026065	26065748	26066658	0.38	[{'connected_gene': 'RNU6-942P', 'score': 12.46}, {'connected_gene': 'RAB10', 'score': 12.41}, {'connected_gene': 'KIF3C', 'score': 10.18}, {'connected_gene': 'GC02P026059', 'score': 0.44}, {'connected_gene': 'LOC105374333', 'score': 0.37}, {'connected_gene': 'RPS2P15', 'score': 0.28}]
chr2	GH02I026063	26063796	26065587	0.72	[{'connected_gene': 'RNU6-942P', 'score': 12.4}, {'connected_gene': 'RAB10', 'score': 12.35}, {'connected_gene': 'GAREM2', 'score': 9.21}, {'connected_gene': 'GC02P026059', 'score': 0.44}, {'connected_gene': 'LOC105374333', 'score': 0.37}, {'connected_gene': 'RPS2P15', 'score': 0.28}]
chr2	GH02I025557	25557202	25559399	1.26	[{'connected_gene': 'LINC01381', 'score': 10.45}, {'connected_gene': 'RAB10', 'score': 2.98}, {'connected_gene': 'GC02P025491', 'score': 0.2}, {'connected_gene': 'GC02P025633', 'score': 0.18}, {'connected_gene': 'DTNB', 'score': 0.13}]
chr2	GH02I026049	26049536	26050647	0.38	[{'connected_gene': 'LOC105374333', 'score': 0.77}, {'connected_gene': 'GC02P026059', 'score': 0.44}, {'connected_gene': 'RAB10', 'score': 0.37}]
chr2	GH02I026083	26083973	26085411	0.52	[{'connected_gene': 'ENSG00000272148', 'score': 11.82}, {'connected_gene': 'GAREM2', 'score': 7.24}, {'connected_gene': 'RPS2P15', 'score': 0.37}, {'connected_gene': 'GC02P026059', 'score': 0.31}, {'connected_gene': 'LOC105374333', 'score': 0.28}, {'connected_gene': 'RAB10', 'score': 0.23}]
chr2	GH02I026058	26058243	26059549	0.77	[{'connected_gene': 'GC02P026059', 'score': 550.77}, {'connected_gene': 'RAB10', 'score': 12.47}, {'connected_gene': 'GAREM2', 'score': 8.32}, {'connected_gene': 'LOC105374333', 'score': 0.39}]
chr2	GH02I026041	26041563	26042668	0.38	[{'connected_gene': 'GC02P026043', 'score': 550.77}, {'connected_gene': 'RNU6-942P', 'score': 550.77}, {'connected_gene': 'KIF3C', 'score': 11.36}, {'connected_gene': 'GAREM2', 'score': 6.96}, {'connected_gene': 'RAB10', 'score': 0.44}]
chr2	GH02I026043	26043667	26045037	1.22	[{'connected_gene': 'GC02P026043', 'score': 550.77}, {'connected_gene': 'RNU6-942P', 'score': 550.77}, {'connected_gene': 'LOC105374333', 'score': 550.77}, {'connected_gene': 'GAREM2', 'score': 7.2}, {'connected_gene': 'RAB10', 'score': 0.39}]
chr2	GH02I026044	26043201	26043600	0.58	[{'connected_gene': 'GC02P026043', 'score': 550.77}, {'connected_gene': 'RNU6-942P', 'score': 550.77}, {'connected_gene': 'LOC105374333', 'score': 0.77}, {'connected_gene': 'RAB10', 'score': 0.44}]
chr2	GH02I026080	26080512	26080661	1.06	[{'connected_gene': 'GC02P026059', 'score': 0.34}, {'connected_gene': 'RPS2P15', 'score': 0.34}, {'connected_gene': 'LOC105374333', 'score': 0.29}, {'connected_gene': 'RAB10', 'score': 0.25}]
chr2	GH02I026076	26076332	26076411	0.63	[{'connected_gene': 'GC02P026059', 'score': 0.37}, {'connected_gene': 'RPS2P15', 'score': 0.31}, {'connected_gene': 'LOC105374333', 'score': 0.29}, {'connected_gene': 'RAB10', 'score': 0.26}]
chr2	GH02I026073	26073482	26074177	1.07	[{'connected_gene': 'GC02P026059', 'score': 0.39}, {'connected_gene': 'RPS2P15', 'score': 0.31}, {'connected_gene': 'LOC105374333', 'score': 0.31}, {'connected_gene': 'RAB10', 'score': 0.28}]