PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000411544	[[43124861, 43124996], [43128898, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532]]	[[43128936, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532]]
ENST00000255175	[[43124864, 43124996], [43128898, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150726]]	[[43128936, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150592]]
ENST00000342374	[[43126071, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150750]]	[[43128936, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150592]]
ENST00000541235	[[43128812, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43147952, 43148055], [43150553, 43150651]]	[[43128936, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142555]]
ENST00000468234	[[43142533, 43142681], [43147952, 43148055], [43150553, 43150695]]	None
NM_198941	[[43124861, 43124996], [43128898, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150757]]	[[43128936, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150592]]
NM_006811	[[43126080, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150757]]	[[43128936, 43129075], [43129713, 43129941], [43132455, 43132636], [43133441, 43133532], [43135467, 43135637], [43138531, 43138669], [43139929, 43140009], [43141441, 43141635], [43142519, 43142681], [43150553, 43150592]]

Promoter

Chrom	Start	End	Description
chr20	43150601	43150751	CAGE_peak_1_at_SERINC3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I044688	44688360	44688509	0.51	[{'connected_gene': 'WISP2', 'score': 12.61}, {'connected_gene': 'KCNK15', 'score': 11.24}, {'connected_gene': 'KCNK15-AS1', 'score': 11.24}, {'connected_gene': 'ADA', 'score': 11.17}, {'connected_gene': 'SERINC3', 'score': 10.47}, {'connected_gene': 'PKIG', 'score': 10.04}, {'connected_gene': 'ENSG00000132832', 'score': 0.44}, {'connected_gene': 'LINC01260', 'score': 0.37}]
chr20	GH20I044965	44965174	44972677	2.58	[{'connected_gene': 'STK4', 'score': 575.1}, {'connected_gene': 'PCIF1', 'score': 24.39}, {'connected_gene': 'SYS1', 'score': 14.48}, {'connected_gene': 'ENSG00000271984', 'score': 12.46}, {'connected_gene': 'PABPC1L', 'score': 10.77}, {'connected_gene': 'DNTTIP1', 'score': 10.34}, {'connected_gene': 'OSER1', 'score': 9.75}, {'connected_gene': 'WFDC5', 'score': 7.35}, {'connected_gene': 'TOMM34', 'score': 6.2}, {'connected_gene': 'SERINC3', 'score': 4.71}, {'connected_gene': 'YWHAB', 'score': 1.84}, {'connected_gene': 'ADA', 'score': 1.18}, {'connected_gene': 'STK4-AS1', 'score': 0.77}, {'connected_gene': 'ENSG00000252021', 'score': 0.28}]
chr20	GH20I044516	44516640	44516789	0.31	[{'connected_gene': 'LINC01620', 'score': 10.5}, {'connected_gene': 'LINC01430', 'score': 10.5}, {'connected_gene': 'SERINC3', 'score': 0.44}, {'connected_gene': 'PIR36658', 'score': 0.37}, {'connected_gene': 'GC20M044500', 'score': 0.37}, {'connected_gene': 'GC20P044473', 'score': 0.26}]
chr20	GH20I044525	44525604	44526802	0.58	[{'connected_gene': 'PKIG', 'score': 6.32}, {'connected_gene': 'TTPAL', 'score': 5.18}, {'connected_gene': 'SERINC3', 'score': 0.77}]
chr20	GH20I044503	44503837	44505785	0.72	[{'connected_gene': 'PKIG', 'score': 17.66}, {'connected_gene': 'LINC01620', 'score': 11.57}, {'connected_gene': 'LINC01430', 'score': 11.57}, {'connected_gene': 'PIR36658', 'score': 0.44}, {'connected_gene': 'GC20M044500', 'score': 0.44}, {'connected_gene': 'SERINC3', 'score': 0.37}, {'connected_gene': 'GC20P044473', 'score': 0.29}]
chr20	GH20I044506	44506860	44507977	0.43	[{'connected_gene': 'PKIG', 'score': 12.28}, {'connected_gene': 'LINC01620', 'score': 10.25}, {'connected_gene': 'LINC01430', 'score': 10.25}, {'connected_gene': 'PIR36658', 'score': 0.44}, {'connected_gene': 'GC20M044500', 'score': 0.44}, {'connected_gene': 'SERINC3', 'score': 0.39}, {'connected_gene': 'GC20P044473', 'score': 0.29}]
chr20	GH20I044594	44594160	44595504	1.37	[{'connected_gene': 'PKIG', 'score': 12.39}, {'connected_gene': 'SERINC3', 'score': 11.9}, {'connected_gene': 'ADA', 'score': 10.75}, {'connected_gene': 'LINC01620', 'score': 9.88}, {'connected_gene': 'LINC01430', 'score': 9.88}, {'connected_gene': 'TTPAL', 'score': 4.86}, {'connected_gene': 'PIR61280', 'score': 0.31}, {'connected_gene': 'GC20M044554', 'score': 0.23}]
chr20	GH20I044591	44591712	44592957	0.38	[{'connected_gene': 'PKIG', 'score': 17.44}, {'connected_gene': 'SERINC3', 'score': 11.39}, {'connected_gene': 'ADA', 'score': 10.75}, {'connected_gene': 'LINC01620', 'score': 9.88}, {'connected_gene': 'LINC01430', 'score': 9.88}, {'connected_gene': 'PIR61280', 'score': 0.31}, {'connected_gene': 'GC20M044554', 'score': 0.23}]
chr20	GH20I044552	44552053	44554878	1.58	[{'connected_gene': 'PKIG', 'score': 17.41}, {'connected_gene': 'ADA', 'score': 10.48}, {'connected_gene': 'SERINC3', 'score': 1.58}, {'connected_gene': 'PIR61280', 'score': 0.2}, {'connected_gene': 'GC20M044554', 'score': 0.16}]
chr20	GH20I044518	44518965	44523782	2.24	[{'connected_gene': 'SERINC3', 'score': 560.86}, {'connected_gene': 'PKIG', 'score': 6.28}, {'connected_gene': 'TTPAL', 'score': 5.11}, {'connected_gene': 'PIR36658', 'score': 0.34}, {'connected_gene': 'GC20M044500', 'score': 0.34}]
chr20	GH20I044501	44501147	44502401	0.51	[{'connected_gene': 'SERINC3', 'score': 11.83}, {'connected_gene': 'PKIG', 'score': 11.76}, {'connected_gene': 'LINC01620', 'score': 11.57}, {'connected_gene': 'LINC01430', 'score': 11.57}, {'connected_gene': 'PIR36658', 'score': 0.77}, {'connected_gene': 'GC20M044500', 'score': 0.77}, {'connected_gene': 'GC20P044473', 'score': 0.31}]
chr20	GH20I044540	44540425	44544888	1.14	[{'connected_gene': 'SERINC3', 'score': 12.4}, {'connected_gene': 'PKIG', 'score': 5.73}, {'connected_gene': 'PIR61280', 'score': 0.18}]
chr20	GH20I044690	44690836	44697249	1.7	[{'connected_gene': 'ENSG00000132832', 'score': 16.52}, {'connected_gene': 'WISP2', 'score': 15.96}, {'connected_gene': 'KCNK15', 'score': 13.8}, {'connected_gene': 'KCNK15-AS1', 'score': 11.33}, {'connected_gene': 'ADA', 'score': 11.15}, {'connected_gene': 'SERINC3', 'score': 10.46}, {'connected_gene': 'PKIG', 'score': 10.04}, {'connected_gene': 'PIGT', 'score': 4.62}, {'connected_gene': 'PABPC1L', 'score': 4.39}, {'connected_gene': 'LINC01260', 'score': 0.34}]
chr20	GH20I044491	44491043	44492929	0.63	[{'connected_gene': 'GC20P044491', 'score': 550.77}, {'connected_gene': 'PIR37618', 'score': 550.77}, {'connected_gene': 'RPL37AP1', 'score': 12.54}, {'connected_gene': 'SERINC3', 'score': 12.04}, {'connected_gene': 'PKIG', 'score': 11.58}, {'connected_gene': 'LINC01620', 'score': 11.15}, {'connected_gene': 'LINC01430', 'score': 11.15}, {'connected_gene': 'TTPAL', 'score': 0.37}, {'connected_gene': 'GC20P044473', 'score': 0.37}]
chr20	GH20I044493	44493549	44498361	1.25	[{'connected_gene': 'GC20P044495', 'score': 550.77}, {'connected_gene': 'PIR46342', 'score': 550.77}, {'connected_gene': 'PKIG', 'score': 17.51}, {'connected_gene': 'TTPAL', 'score': 17.4}, {'connected_gene': 'SERINC3', 'score': 13.18}, {'connected_gene': 'RPL37AP1', 'score': 12.54}, {'connected_gene': 'LINC01620', 'score': 11.14}, {'connected_gene': 'LINC01430', 'score': 11.14}, {'connected_gene': 'OSER1', 'score': 1.56}, {'connected_gene': 'ADA', 'score': 1.48}, {'connected_gene': 'STK4', 'score': 1.22}, {'connected_gene': 'PIR60204', 'score': 0.77}, {'connected_gene': 'GC20P044491', 'score': 0.77}, {'connected_gene': 'GC20P044473', 'score': 0.34}]
chr20	GH20I044489	44489157	44490894	0.83	[{'connected_gene': 'GC20P044491', 'score': 550.77}, {'connected_gene': 'SERINC3', 'score': 7.25}, {'connected_gene': 'PKIG', 'score': 6.15}, {'connected_gene': 'PIR42438', 'score': 0.77}, {'connected_gene': 'TTPAL', 'score': 0.39}, {'connected_gene': 'GC20P044473', 'score': 0.37}]
chr20	GH20I044683	44683473	44685949	1.29	[{'connected_gene': 'ENSG00000132832', 'score': 44.95}, {'connected_gene': 'ADA', 'score': 18.03}, {'connected_gene': 'KCNK15', 'score': 15.97}, {'connected_gene': 'WISP2', 'score': 12.59}, {'connected_gene': 'KCNK15-AS1', 'score': 11.23}, {'connected_gene': 'SERINC3', 'score': 10.47}, {'connected_gene': 'PKIG', 'score': 10.05}, {'connected_gene': 'OSER1-AS1', 'score': 5.33}, {'connected_gene': 'LINC01260', 'score': 0.39}]