PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000595851	[[58990878, 58992172], [58992430, 58992554], [58994898, 58995013], [59009860, 59010058], [59010151, 59010282], [59010489, 59010630]]	[[59009881, 59010058], [59010151, 59010262]]
ENST00000594786	[[59009699, 59010058], [59010151, 59010282], [59010489, 59010642]]	[[59009881, 59010058], [59010151, 59010262]]
ENST00000599700	[[59009703, 59010058], [59010489, 59010608]]	None
ENST00000263093	[[59009703, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022634, 59023432]]	[[59009881, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022634, 59023322]]
ENST00000601355	[[59009752, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022886, 59023359]]	[[59009881, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022886, 59023322]]
ENST00000601997	[[59009841, 59010058], [59010151, 59010509]]	None
ENST00000594683	[[59011960, 59012073], [59012652, 59012777], [59021213, 59021539]]	None
ENST00000593745	[[59018748, 59023780]]	None
NM_012254	[[59009699, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022634, 59023432]]	[[59009881, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022634, 59023322]]
NM_001321196	[[59009699, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022886, 59023432]]	[[59009881, 59010058], [59010151, 59010282], [59010489, 59010587], [59010858, 59011057], [59011705, 59011796], [59011878, 59012073], [59012652, 59012777], [59021213, 59021372], [59022087, 59022297], [59022886, 59023322]]

Promoter

Chrom	Start	End	Description
chr19	59010565	59010643	CAGE_peak_1_at_SLC27A5_5end
chr19	59023348	59023366	CAGE_peak_2_at_SLC27A5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I058504	58504734	58504883	0.43	[{'connected_gene': 'ZNF584', 'score': 19.5}, {'connected_gene': 'PIR33832', 'score': 0.77}, {'connected_gene': 'SLC27A5', 'score': 0.44}, {'connected_gene': 'LOC105372485', 'score': 0.44}]
chr19	GH19I058511	58511295	58515200	1.91	[{'connected_gene': 'SLC27A5', 'score': 550.77}, {'connected_gene': 'LOC105372486', 'score': 550.77}, {'connected_gene': 'ZNF584', 'score': 17.81}, {'connected_gene': 'CENPBD1P1', 'score': 13.09}, {'connected_gene': 'ZBTB45', 'score': 0.31}]
chr19	GH19I058498	58498069	58500260	1.8	[{'connected_gene': 'LOC105372485', 'score': 550.77}, {'connected_gene': 'ZNF584', 'score': 30.75}, {'connected_gene': 'ZNF324B', 'score': 28.99}, {'connected_gene': 'TRIM28', 'score': 16.39}, {'connected_gene': 'LOC105372483', 'score': 16.18}, {'connected_gene': 'ENSG00000268543', 'score': 15.53}, {'connected_gene': 'ZBTB45', 'score': 13.13}, {'connected_gene': 'ZNF132', 'score': 12.87}, {'connected_gene': 'ENSG00000268912', 'score': 12.81}, {'connected_gene': 'ZNF134', 'score': 12.19}, {'connected_gene': 'ZNF416', 'score': 12.04}, {'connected_gene': 'ZNF256', 'score': 11.74}, {'connected_gene': 'ZNF549', 'score': 10.69}, {'connected_gene': 'ZNF446', 'score': 10.6}, {'connected_gene': 'ZNF135', 'score': 9.8}, {'connected_gene': 'ZSCAN18', 'score': 9.74}, {'connected_gene': 'CENPBD1P1', 'score': 8.96}, {'connected_gene': 'A1BG', 'score': 7.53}, {'connected_gene': 'GC19M058505', 'score': 0.44}, {'connected_gene': 'SLC27A5', 'score': 0.39}]
chr19	GH19I058509	58509511	58510189	0.86	[{'connected_gene': 'PIR33832', 'score': 550.77}, {'connected_gene': 'CENPBD1P1', 'score': 11.28}, {'connected_gene': 'SLC27A5', 'score': 0.77}, {'connected_gene': 'LOC105372485', 'score': 0.39}]
chr19	GH19I058488	58488895	58490172	0.85	[{'connected_gene': 'GC19M058505', 'score': 550.77}, {'connected_gene': 'RN7SL693P', 'score': 550.77}, {'connected_gene': 'ZNF132', 'score': 19.72}, {'connected_gene': 'ZNF417', 'score': 13.31}, {'connected_gene': 'ZNF773', 'score': 13.13}, {'connected_gene': 'ZNF134', 'score': 12.18}, {'connected_gene': 'ZNF274', 'score': 10.99}, {'connected_gene': 'ZNF446', 'score': 10.9}, {'connected_gene': 'TRIM28', 'score': 10.55}, {'connected_gene': 'ZNF256', 'score': 10.33}, {'connected_gene': 'ZNF606', 'score': 10.12}, {'connected_gene': 'ZNF211', 'score': 10.09}, {'connected_gene': 'RNU6-1337P', 'score': 0.44}, {'connected_gene': 'SLC27A5', 'score': 0.34}]