PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290291	[[61436186, 61436382], [61438888, 61438957], [61439598, 61439677], [61440936, 61441015], [61441850, 61441917], [61442813, 61442962], [61443581, 61445352]]	[[61436211, 61436382], [61438888, 61438957], [61439598, 61439677], [61440936, 61441015], [61441850, 61441917], [61442813, 61442962], [61443581, 61445001]]
ENST00000370461	[[61437237, 61439677], [61440936, 61441015], [61441850, 61441917], [61442813, 61442962], [61443581, 61445352]]	[[61439514, 61439677], [61440936, 61441015], [61441850, 61441917], [61442813, 61442962], [61443581, 61445001]]
ENST00000450048	[[61438624, 61438957], [61439598, 61439677], [61440936, 61441015], [61441850, 61441912]]	[[61438894, 61438957], [61439598, 61439677], [61440936, 61441015], [61441850, 61441912]]
NM_007346	[[61436151, 61436382], [61438888, 61438957], [61439598, 61439677], [61440936, 61441015], [61441850, 61441917], [61442813, 61442962], [61443581, 61445352]]	[[61436211, 61436382], [61438888, 61438957], [61439598, 61439677], [61440936, 61441015], [61441850, 61441917], [61442813, 61442962], [61443581, 61445001]]

Promoter

Chrom	Start	End	Description
chr20	61436146	61436197	CAGE_peak_1_at_OGFR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I063264	63264479	63269889	1.17	[{'connected_gene': 'BIRC7', 'score': 29.52}, {'connected_gene': 'MIR647', 'score': 17.87}, {'connected_gene': 'COL20A1', 'score': 16.72}, {'connected_gene': 'DIDO1', 'score': 15.98}, {'connected_gene': 'UCKL1', 'score': 14.65}, {'connected_gene': 'LAMA5', 'score': 14.28}, {'connected_gene': 'NKAIN4', 'score': 13.92}, {'connected_gene': 'ENSG00000237371', 'score': 13.84}, {'connected_gene': 'ARFGAP1', 'score': 11.84}, {'connected_gene': 'RTEL1', 'score': 11.83}, {'connected_gene': 'ENSG00000226332', 'score': 10.98}, {'connected_gene': 'RNU6-994P', 'score': 10.89}, {'connected_gene': 'YTHDF1', 'score': 10.14}, {'connected_gene': 'OGFR', 'score': 4.69}, {'connected_gene': 'ENSG00000231977', 'score': 4.63}, {'connected_gene': 'GC20P063264', 'score': 0.77}]
chr20	GH20I062793	62793333	62798318	2.62	[{'connected_gene': 'MRGBP', 'score': 560.75}, {'connected_gene': 'LOC105372716', 'score': 550.77}, {'connected_gene': 'OGFR', 'score': 23.89}, {'connected_gene': 'DIDO1', 'score': 19.55}, {'connected_gene': 'YTHDF1', 'score': 13.31}, {'connected_gene': 'RPS21', 'score': 13.28}, {'connected_gene': 'LSM14B', 'score': 13.18}, {'connected_gene': 'LAMA5', 'score': 11.83}, {'connected_gene': 'RTEL1', 'score': 10.66}, {'connected_gene': 'SS18L1', 'score': 9.72}, {'connected_gene': 'DPH3P1', 'score': 1.95}]
chr20	GH20I062708	62708787	62713063	1.75	[{'connected_gene': 'NTSR1', 'score': 550.77}, {'connected_gene': 'RTEL1', 'score': 19.89}, {'connected_gene': 'ARFGAP1', 'score': 15.56}, {'connected_gene': 'TNFRSF6B', 'score': 13.58}, {'connected_gene': 'YTHDF1', 'score': 12.4}, {'connected_gene': 'ARFRP1', 'score': 12.24}, {'connected_gene': 'ENSG00000223669', 'score': 11.99}, {'connected_gene': 'OGFR-AS1', 'score': 11.51}, {'connected_gene': 'OGFR', 'score': 11.51}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.5}, {'connected_gene': 'SLCO4A1', 'score': 11.44}, {'connected_gene': 'MRGBP', 'score': 10.96}, {'connected_gene': 'ENSG00000229882', 'score': 10.49}, {'connected_gene': 'ENSG00000232121', 'score': 10.49}, {'connected_gene': 'MIR133A2', 'score': 10.15}, {'connected_gene': 'PTK6', 'score': 5.98}]
chr20	GH20I062685	62685801	62686800	1.35	[{'connected_gene': 'NTSR1', 'score': 20.01}, {'connected_gene': 'SLCO4A1', 'score': 1.74}, {'connected_gene': 'OGFR', 'score': 1.64}, {'connected_gene': 'DPH3P1', 'score': 1.58}, {'connected_gene': 'LINC00686', 'score': 0.39}, {'connected_gene': 'SLCO4A1-AS1', 'score': 0.37}]
chr20	GH20I062674	62674989	62676144	0.75	[{'connected_gene': 'NTSR1', 'score': 8.62}, {'connected_gene': 'OGFR', 'score': 3.78}, {'connected_gene': 'SLCO4A1-AS1', 'score': 0.44}, {'connected_gene': 'LINC00686', 'score': 0.34}, {'connected_gene': 'SLCO4A1', 'score': 0.29}]
chr20	GH20I062641	62641393	62649370	2.21	[{'connected_gene': 'SLCO4A1', 'score': 550.77}, {'connected_gene': 'MRGBP', 'score': 20.51}, {'connected_gene': 'TAF4', 'score': 15.36}, {'connected_gene': 'GMEB2', 'score': 14.28}, {'connected_gene': 'SLCO4A1-AS1', 'score': 12.52}, {'connected_gene': 'OGFR', 'score': 11.31}, {'connected_gene': 'OGFR-AS1', 'score': 11.3}, {'connected_gene': 'MIR1-1', 'score': 10.99}, {'connected_gene': 'MIR1-1HG-AS1', 'score': 10.99}, {'connected_gene': 'MIR1-1HG', 'score': 10.99}, {'connected_gene': 'FNDC11', 'score': 10.87}, {'connected_gene': 'DIDO1', 'score': 10.56}, {'connected_gene': 'ADRM1', 'score': 10.07}, {'connected_gene': 'TCFL5', 'score': 9.77}, {'connected_gene': 'NKAIN4', 'score': 4.63}, {'connected_gene': 'ENSG00000167046', 'score': 0.77}, {'connected_gene': 'GC20P062822', 'score': 0.77}, {'connected_gene': 'ENSG00000277496', 'score': 0.44}, {'connected_gene': 'LOC101928465', 'score': 0.39}]
chr20	GH20I062821	62821950	62825960	1.47	[{'connected_gene': 'COL9A3', 'score': 29.69}, {'connected_gene': 'DIDO1', 'score': 19.64}, {'connected_gene': 'GMEB2', 'score': 18.24}, {'connected_gene': 'TAF4', 'score': 14.7}, {'connected_gene': 'MRGBP', 'score': 11.59}, {'connected_gene': 'OGFR', 'score': 11.22}, {'connected_gene': 'GID8', 'score': 10.53}, {'connected_gene': 'RTEL1', 'score': 10.41}, {'connected_gene': 'DPH3P1', 'score': 0.34}]
chr20	GH20I062814	62814697	62820636	1.86	[{'connected_gene': 'COL9A3', 'score': 581.31}, {'connected_gene': 'TCFL5', 'score': 11.35}, {'connected_gene': 'ENSG00000223669', 'score': 10.67}, {'connected_gene': 'OGFR', 'score': 10.56}, {'connected_gene': 'DPH3P1', 'score': 0.31}]
chr20	GH20I062500	62500245	62503000	1.59	[{'connected_gene': 'DIDO1', 'score': 73.03}, {'connected_gene': 'TAF4', 'score': 54.43}, {'connected_gene': 'LAMA5', 'score': 30.28}, {'connected_gene': 'ENSG00000226332', 'score': 28.86}, {'connected_gene': 'MRGBP', 'score': 25.6}, {'connected_gene': 'RPS21', 'score': 23.79}, {'connected_gene': 'HAR1A', 'score': 12.11}, {'connected_gene': 'MTG2', 'score': 10.82}, {'connected_gene': 'YTHDF1', 'score': 10.26}, {'connected_gene': 'DPH3P1', 'score': 7.25}, {'connected_gene': 'OGFR', 'score': 4.15}, {'connected_gene': 'GC20M062490', 'score': 0.77}, {'connected_gene': 'PIR36870', 'score': 0.77}]
chr20	GH20I062738	62738241	62743126	1.63	[{'connected_gene': 'OGFR', 'score': 18.09}, {'connected_gene': 'NTSR1', 'score': 17.24}, {'connected_gene': 'LINC00659', 'score': 12.1}, {'connected_gene': 'LINC00686', 'score': 12.06}, {'connected_gene': 'OGFR-AS1', 'score': 11.6}, {'connected_gene': 'MIR1-1', 'score': 10.54}, {'connected_gene': 'MIR1-1HG-AS1', 'score': 10.54}, {'connected_gene': 'MIR1-1HG', 'score': 10.54}, {'connected_gene': 'ENSG00000229882', 'score': 10.41}, {'connected_gene': 'ENSG00000232121', 'score': 10.41}, {'connected_gene': 'ENSG00000223669', 'score': 6.1}, {'connected_gene': 'DPH3P1', 'score': 3.16}, {'connected_gene': 'DIDO1', 'score': 2.61}, {'connected_gene': 'GC20M062750', 'score': 0.39}]
chr20	GH20I062791	62791201	62793046	1.21	[{'connected_gene': 'OGFR', 'score': 20.68}, {'connected_gene': 'LOC105372716', 'score': 0.77}, {'connected_gene': 'LINC00659', 'score': 0.37}]
chr20	GH20I062803	62803701	62807436	2	[{'connected_gene': 'OGFR', 'score': 571.42}, {'connected_gene': 'OGFR-AS1', 'score': 550.77}, {'connected_gene': 'MRGBP', 'score': 6.88}]
chr20	GH20I062808	62808369	62808538	0.76	[{'connected_gene': 'OGFR', 'score': 8.01}, {'connected_gene': 'OGFR-AS1', 'score': 0.77}, {'connected_gene': 'COL9A3', 'score': 0.44}]
chr20	GH20I062715	62715919	62716899	0.66	[{'connected_gene': 'OGFR', 'score': 11.52}, {'connected_gene': 'OGFR-AS1', 'score': 11.52}, {'connected_gene': 'LINC00659', 'score': 11.52}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.48}, {'connected_gene': 'SLCO4A1', 'score': 11.43}, {'connected_gene': 'MIR133A2', 'score': 11.07}, {'connected_gene': 'MRGBP', 'score': 10.97}, {'connected_gene': 'ENSG00000229882', 'score': 10.48}, {'connected_gene': 'ENSG00000232121', 'score': 10.48}, {'connected_gene': 'NTSR1', 'score': 0.44}, {'connected_gene': 'ENSG00000223669', 'score': 0.37}]
chr20	GH20I062989	62989201	62989533	0.67	[{'connected_gene': 'OGFR', 'score': 4.8}, {'connected_gene': 'DPH3P1', 'score': 2.9}, {'connected_gene': 'GC20P062974', 'score': 0.39}, {'connected_gene': 'BHLHE23', 'score': 0.37}]
chr20	GH20I062727	62727201	62729200	0.89	[{'connected_gene': 'LINC00659', 'score': 11.55}, {'connected_gene': 'SLCO4A1', 'score': 11.2}, {'connected_gene': 'ENSG00000229882', 'score': 10.69}, {'connected_gene': 'ENSG00000232121', 'score': 10.69}, {'connected_gene': 'OGFR-AS1', 'score': 10.46}, {'connected_gene': 'OGFR', 'score': 10.46}, {'connected_gene': 'ENSG00000223669', 'score': 0.44}, {'connected_gene': 'NTSR1', 'score': 0.37}]
chr20	GH20I062732	62732170	62732278	0.4	[{'connected_gene': 'LINC00659', 'score': 11.57}, {'connected_gene': 'SLCO4A1-AS1', 'score': 11.23}, {'connected_gene': 'SLCO4A1', 'score': 11.2}, {'connected_gene': 'ENSG00000229882', 'score': 10.68}, {'connected_gene': 'ENSG00000232121', 'score': 10.68}, {'connected_gene': 'OGFR-AS1', 'score': 10.56}, {'connected_gene': 'OGFR', 'score': 10.56}, {'connected_gene': 'ENSG00000223669', 'score': 0.77}, {'connected_gene': 'NTSR1', 'score': 0.34}]
chr20	GH20I062787	62787956	62788147	0.62	[{'connected_gene': 'DPH3P1', 'score': 6.34}, {'connected_gene': 'OGFR', 'score': 6.11}, {'connected_gene': 'DIDO1', 'score': 1.44}, {'connected_gene': 'LOC105372716', 'score': 0.44}, {'connected_gene': 'LINC00659', 'score': 0.39}]
chr20	GH20I062588	62588158	62588379	0.86	[{'connected_gene': 'DPH3P1', 'score': 5.71}, {'connected_gene': 'OGFR', 'score': 2.37}, {'connected_gene': 'ENSG00000264490', 'score': 0.39}, {'connected_gene': 'WI2-87327B8.2', 'score': 0.37}]
chr20	GH20I062649	62649729	62654454	2.1	[{'connected_gene': 'ENSG00000277496', 'score': 550.77}, {'connected_gene': 'ENSG00000276317', 'score': 550.77}, {'connected_gene': 'OGFR', 'score': 21.02}, {'connected_gene': 'YTHDF1', 'score': 11.39}, {'connected_gene': 'OGFR-AS1', 'score': 11.31}, {'connected_gene': 'MTG2', 'score': 10.59}, {'connected_gene': 'MIR1-1', 'score': 10.55}, {'connected_gene': 'MIR1-1HG-AS1', 'score': 10.54}, {'connected_gene': 'MIR1-1HG', 'score': 10.54}, {'connected_gene': 'DIDO1', 'score': 8.72}, {'connected_gene': 'OSBPL2', 'score': 4.55}, {'connected_gene': 'DPH3P1', 'score': 2.03}, {'connected_gene': 'BHLHE23', 'score': 1.65}, {'connected_gene': 'GC20P062822', 'score': 0.77}, {'connected_gene': 'LOC101928465', 'score': 0.77}, {'connected_gene': 'SLCO4A1', 'score': 0.44}]