PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000491129	[[49890016, 49890110], [49940713, 49940811], [50022937, 50023115], [50095780, 50096020]]	None
ENST00000465922	[[49890073, 49890110], [49940713, 49940811], [49975346, 49975757]]	None
ENST00000046087	[[49977036, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097737], [50121369, 50121495], [50129224, 50129305], [50132663, 50132860]]	[[49977123, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097737], [50121369, 50121495], [50129224, 50129305], [50132663, 50132790]]
ENST00000419417	[[49977123, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097734], [50121369, 50121495], [50129224, 50129305], [50132663, 50132832]]	[[49977123, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097734], [50121369, 50121495], [50129224, 50129305], [50132663, 50132790]]
ENST00000450231	[[50121369, 50121495], [50129224, 50129305], [50156848, 50157015], [50159803, 50159992], [50160899, 50160925]]	[[50121369, 50121495], [50129224, 50129305], [50156848, 50156858]]
ENST00000413331	[[50121455, 50121495], [50129224, 50129305], [50132458, 50132828]]	[[50132562, 50132790]]
NM_007009	[[49977022, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097737], [50121369, 50121495], [50129224, 50129305], [50132663, 50132860]]	[[49977123, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097737], [50121369, 50121495], [50129224, 50129305], [50132663, 50132790]]
NM_001159878	[[49977022, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097734], [50121369, 50121495], [50129224, 50129305], [50132663, 50132860]]	[[49977123, 49977218], [50022937, 50023115], [50057835, 50057912], [50070687, 50070906], [50097584, 50097734], [50121369, 50121495], [50129224, 50129305], [50132663, 50132790]]

Promoter

Chrom	Start	End	Description
chr7	50095984	50095989	CAGE_peak_5_at_ZPBP_5end
chr7	50096016	50096027	CAGE_peak_3_at_ZPBP_5end
chr7	50096029	50096038	CAGE_peak_4_at_ZPBP_5end
chr7	50132801	50132851	CAGE_peak_1_at_ZPBP_5end
chr7	50132862	50132871	CAGE_peak_2_at_ZPBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I050370	50370901	50375600	0.31	[{'connected_gene': 'FIGNL1', 'score': 12.12}, {'connected_gene': 'ENSG00000228005', 'score': 12.02}, {'connected_gene': 'ZPBP', 'score': 10.15}, {'connected_gene': 'GC07P050382', 'score': 0.44}, {'connected_gene': 'IKZF1', 'score': 0.2}]
chr7	GH07I050392	50392168	50399154	1.13	[{'connected_gene': 'FIGNL1', 'score': 46.87}, {'connected_gene': 'ENSG00000228005', 'score': 10.77}, {'connected_gene': 'ZPBP', 'score': 10.41}, {'connected_gene': 'SPATA48', 'score': 10.41}, {'connected_gene': 'IKZF1', 'score': 3.03}, {'connected_gene': 'GC07P050382', 'score': 0.39}, {'connected_gene': 'GC07P050435', 'score': 0.28}]
chr7	GH07I050404	50404536	50408172	0.89	[{'connected_gene': 'FIGNL1', 'score': 48.33}, {'connected_gene': 'ZPBP', 'score': 10.89}, {'connected_gene': 'SPATA48', 'score': 10.89}, {'connected_gene': 'GC07P050382', 'score': 0.34}, {'connected_gene': 'GC07P050435', 'score': 0.31}, {'connected_gene': 'IKZF1', 'score': 0.15}]
chr7	GH07I050389	50389319	50390344	0.31	[{'connected_gene': 'FIGNL1', 'score': 47.47}, {'connected_gene': 'ZPBP', 'score': 10.07}, {'connected_gene': 'SPATA48', 'score': 10.06}, {'connected_gene': 'GC07P050382', 'score': 0.44}, {'connected_gene': 'GC07P050435', 'score': 0.25}, {'connected_gene': 'IKZF1', 'score': 0.17}]
chr7	GH07I050425	50425965	50427681	0.2	[{'connected_gene': 'FIGNL1', 'score': 36.76}, {'connected_gene': 'ZPBP', 'score': 9.91}, {'connected_gene': 'SPATA48', 'score': 9.63}, {'connected_gene': 'GC07P050435', 'score': 0.44}, {'connected_gene': 'GC07P050382', 'score': 0.26}]
chr7	GH07I050409	50409068	50412113	1.4	[{'connected_gene': 'FIGNL1', 'score': 46.56}, {'connected_gene': 'RNU6-1091P', 'score': 12.58}, {'connected_gene': 'ENSG00000228005', 'score': 11.48}, {'connected_gene': 'ZPBP', 'score': 10.91}, {'connected_gene': 'IKZF1', 'score': 1.8}, {'connected_gene': 'GC07P050435', 'score': 0.34}, {'connected_gene': 'GC07P050382', 'score': 0.31}]
chr7	GH07I049852	49852725	49852914	0.56	[{'connected_gene': 'VWC2', 'score': 0.18}, {'connected_gene': 'GNL2P1', 'score': 0.16}, {'connected_gene': 'ZPBP', 'score': 0.06}]
chr7	GH07I049855	49855219	49855623	0.2	[{'connected_gene': 'VWC2', 'score': 0.18}, {'connected_gene': 'GNL2P1', 'score': 0.17}, {'connected_gene': 'ZPBP', 'score': 0.06}]
chr7	GH07I050683	50683942	50686346	1.09	[{'connected_gene': 'GRB10', 'score': 11.77}, {'connected_gene': 'ZPBP', 'score': 9.62}, {'connected_gene': 'PIR54882', 'score': 0.39}, {'connected_gene': 'GC07P050783', 'score': 0.15}]
chr7	GH07I050390	50390775	50391931	0.2	[{'connected_gene': 'ZPBP', 'score': 10.06}, {'connected_gene': 'SPATA48', 'score': 10.06}, {'connected_gene': 'GC07P050382', 'score': 0.44}, {'connected_gene': 'GC07P050435', 'score': 0.26}, {'connected_gene': 'IKZF1', 'score': 0.17}]
chr7	GH07I050092	50092145	50094510	1.74	[{'connected_gene': 'ZPBP', 'score': 557.41}, {'connected_gene': 'SPATA48', 'score': 0.77}, {'connected_gene': 'GNL2P1', 'score': 0.11}]
chr7	GH07I050156	50156514	50157388	0.51	[{'connected_gene': 'ZPBP', 'score': 10.61}, {'connected_gene': 'SPATA48', 'score': 10.51}, {'connected_gene': 'ENSG00000228005', 'score': 0.39}, {'connected_gene': 'ENSG00000231681', 'score': 0.14}]
chr7	GH07I050375	50375655	50377758	0.2	[{'connected_gene': 'RNU6-1091P', 'score': 11.43}, {'connected_gene': 'ENSG00000228005', 'score': 11.34}, {'connected_gene': 'ZPBP', 'score': 10.12}, {'connected_gene': 'SPATA48', 'score': 10.11}, {'connected_gene': 'FIGNL1', 'score': 7.78}, {'connected_gene': 'GC07P050382', 'score': 0.44}, {'connected_gene': 'IKZF1', 'score': 0.19}]
chr7	GH07I050378	50378643	50380235	0.89	[{'connected_gene': 'RNU6-1091P', 'score': 11.43}, {'connected_gene': 'ENSG00000228005', 'score': 11.33}, {'connected_gene': 'ZPBP', 'score': 10.12}, {'connected_gene': 'SPATA48', 'score': 10.11}, {'connected_gene': 'GC07P050382', 'score': 0.77}, {'connected_gene': 'IKZF1', 'score': 0.18}]
chr7	GH07I050341	50341402	50370192	1.74	[{'connected_gene': 'IKZF1', 'score': 18.52}, {'connected_gene': 'FIGNL1', 'score': 17.94}, {'connected_gene': 'ENSG00000228005', 'score': 12.2}, {'connected_gene': 'ZPBP', 'score': 10.37}, {'connected_gene': 'GC07P050382', 'score': 0.31}]
chr7	GH07I049866	49866465	49866574	0.31	[{'connected_gene': 'GNL2P1', 'score': 0.18}, {'connected_gene': 'VWC2', 'score': 0.16}, {'connected_gene': 'ZPBP', 'score': 0.07}]
chr7	GH07I050145	50145689	50150761	0.99	[{'connected_gene': 'SPATA48', 'score': 29.96}, {'connected_gene': 'ZPBP', 'score': 17.59}, {'connected_gene': 'IKZF1', 'score': 4.09}, {'connected_gene': 'ENSG00000228005', 'score': 0.44}, {'connected_gene': 'ENSG00000231681', 'score': 0.14}]
chr7	GH07I050067	50067658	50070623	0.83	[{'connected_gene': 'SPATA48', 'score': 29.1}, {'connected_gene': 'ZPBP', 'score': 18.26}, {'connected_gene': 'GNL2P1', 'score': 0.13}]
chr7	GH07I050070	50070894	50070903	0.2	[{'connected_gene': 'SPATA48', 'score': 0.34}, {'connected_gene': 'ZPBP', 'score': 0.23}, {'connected_gene': 'GNL2P1', 'score': 0.13}]
chr7	GH07I050003	50003761	50004021	0.22	[{'connected_gene': 'SPATA48', 'score': 6.45}, {'connected_gene': 'GNL2P1', 'score': 0.22}, {'connected_gene': 'ZPBP', 'score': 0.13}]
chr7	GH07I050382	50382703	50386209	0.2	[{'connected_gene': 'GC07P050382', 'score': 550.77}, {'connected_gene': 'FIGNL1', 'score': 21.81}, {'connected_gene': 'ENSG00000228005', 'score': 11.88}, {'connected_gene': 'RNU6-1091P', 'score': 11.44}, {'connected_gene': 'ZPBP', 'score': 10.46}, {'connected_gene': 'SPATA48', 'score': 10.45}, {'connected_gene': 'DDC', 'score': 9.26}, {'connected_gene': 'GC07P050435', 'score': 0.23}, {'connected_gene': 'IKZF1', 'score': 0.18}]
chr7	GH07I050670	50670638	50674138	0.2	[{'connected_gene': 'PIR54882', 'score': 550.77}, {'connected_gene': 'GRB10', 'score': 17.34}, {'connected_gene': 'FIGNL1', 'score': 11.36}, {'connected_gene': 'DDC', 'score': 9.9}, {'connected_gene': 'ZPBP', 'score': 9.66}, {'connected_gene': 'PIR42465', 'score': 0.44}]
chr7	GH07I050674	50674206	50676457	0.2	[{'connected_gene': 'PIR54882', 'score': 550.77}, {'connected_gene': 'GRB10', 'score': 16.05}, {'connected_gene': 'FIGNL1', 'score': 11.34}, {'connected_gene': 'ZPBP', 'score': 9.47}, {'connected_gene': 'GC07P050783', 'score': 0.14}]
chr7	GH07I050293	50293452	50294868	0.84	[{'connected_gene': 'GC07P050292', 'score': 550.77}, {'connected_gene': 'ENSG00000228005', 'score': 10.62}, {'connected_gene': 'ZPBP', 'score': 9.5}, {'connected_gene': 'SPATA48', 'score': 9.49}, {'connected_gene': 'IKZF1', 'score': 4.72}]
chr7	GH07I050301	50301037	50301165	0.42	[{'connected_gene': 'ENSG00000228005', 'score': 10.62}, {'connected_gene': 'ZPBP', 'score': 9.5}, {'connected_gene': 'SPATA48', 'score': 9.48}, {'connected_gene': 'IKZF1', 'score': 6.49}, {'connected_gene': 'GC07P050292', 'score': 0.44}]
chr7	GH07I050179	50179868	50180692	0.6	[{'connected_gene': 'ENSG00000228005', 'score': 12.9}, {'connected_gene': 'ZPBP', 'score': 10.85}, {'connected_gene': 'SPATA48', 'score': 10.8}, {'connected_gene': 'ENSG00000231681', 'score': 0.18}]
chr7	GH07I050185	50185385	50185534	0.2	[{'connected_gene': 'ENSG00000228005', 'score': 12.89}, {'connected_gene': 'ZPBP', 'score': 10.84}, {'connected_gene': 'SPATA48', 'score': 10.79}, {'connected_gene': 'ENSG00000231681', 'score': 0.18}]
chr7	GH07I050182	50182845	50182994	0.38	[{'connected_gene': 'ENSG00000228005', 'score': 12.89}, {'connected_gene': 'ZPBP', 'score': 10.84}, {'connected_gene': 'SPATA48', 'score': 10.79}, {'connected_gene': 'ENSG00000231681', 'score': 0.18}]
chr7	GH07I050142	50142465	50142614	0.54	[{'connected_gene': 'ENSG00000228005', 'score': 550.77}, {'connected_gene': 'ZPBP', 'score': 6.65}, {'connected_gene': 'SPATA48', 'score': 0.25}]
chr7	GH07I050381	50381734	50382493	0.8	[{'connected_gene': 'GC07P050382', 'score': 550.77}, {'connected_gene': 'RNU6-1091P', 'score': 11.44}, {'connected_gene': 'ENSG00000228005', 'score': 11.33}, {'connected_gene': 'ZPBP', 'score': 10.11}, {'connected_gene': 'SPATA48', 'score': 10.11}, {'connected_gene': 'IKZF1', 'score': 0.18}]
chr7	GH07I050380	50380241	50381486	0.2	[{'connected_gene': 'GC07P050382', 'score': 550.77}, {'connected_gene': 'RNU6-1091P', 'score': 11.44}, {'connected_gene': 'ENSG00000228005', 'score': 11.33}, {'connected_gene': 'ZPBP', 'score': 10.12}, {'connected_gene': 'SPATA48', 'score': 10.11}, {'connected_gene': 'IKZF1', 'score': 0.18}]
chr7	GH07I050166	50166885	50168334	0.31	[{'connected_gene': 'ENSG00000228005', 'score': 11.95}, {'connected_gene': 'IKZF1', 'score': 10.68}, {'connected_gene': 'ZPBP', 'score': 10.0}, {'connected_gene': 'SPATA48', 'score': 5.13}, {'connected_gene': 'ENSG00000231681', 'score': 0.15}]
chr7	GH07I050204	50204492	50204960	0.2	[{'connected_gene': 'ENSG00000228005', 'score': 12.28}, {'connected_gene': 'IKZF1', 'score': 11.94}, {'connected_gene': 'ZPBP', 'score': 10.13}, {'connected_gene': 'ENSG00000231681', 'score': 0.22}]