PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000487931	[[78444858, 78444977], [78478734, 78479303], [78481697, 78481958]]	None
ENST00000477671	[[78444915, 78444977], [78446888, 78446986], [78458437, 78458550], [78478734, 78479198]]	None
ENST00000484662	[[78444964, 78445303], [78478734, 78479301]]	None
ENST00000426517	[[78445867, 78446006], [78470763, 78471005], [78478734, 78479039]]	[[78470794, 78471005], [78478734, 78479039]]
ENST00000370763	[[78470537, 78471005], [78478734, 78479303], [78481697, 78483648]]	[[78470794, 78471005], [78478734, 78479303], [78481697, 78481931]]
ENST00000476396	[[78470618, 78471005], [78481697, 78481983]]	None
NM_001317102	[[78444841, 78444977], [78478734, 78479303], [78481697, 78483648]]	[[78478868, 78479303], [78481697, 78481931]]
NM_001317101	[[78444841, 78445303], [78478734, 78479303], [78481697, 78483648]]	[[78478868, 78479303], [78481697, 78481931]]
NM_001317100	[[78444841, 78445303], [78458437, 78458550], [78478734, 78479303], [78481697, 78483648]]	[[78458459, 78458550], [78478734, 78479303], [78481697, 78481931]]
NM_001317099	[[78445867, 78446006], [78470763, 78471005], [78478734, 78479303], [78481697, 78483648]]	[[78470794, 78471005], [78478734, 78479303], [78481697, 78481931]]
NM_001317103	[[78470511, 78471005], [78481697, 78483648]]	[[78470794, 78471005], [78481697, 78481720]]
NM_007034	[[78470511, 78471005], [78478734, 78479303], [78481697, 78483648]]	[[78470794, 78471005], [78478734, 78479303], [78481697, 78481931]]

Promoter

Chrom	Start	End	Description
chr1	78444841	78444869	CAGE_peak_6_at_DNAJB4_5end
chr1	78444874	78444905	CAGE_peak_4_at_DNAJB4_5end
chr1	78444914	78444936	CAGE_peak_9_at_DNAJB4_5end
chr1	78444940	78444963	CAGE_peak_3_at_DNAJB4_5end
chr1	78444969	78445006	CAGE_peak_5_at_DNAJB4_5end
chr1	78470530	78470551	CAGE_peak_7_at_DNAJB4_5end
chr1	78470561	78470583	CAGE_peak_8_at_DNAJB4_5end
chr1	78470588	78470611	CAGE_peak_2_at_DNAJB4_5end
chr1	78470614	78470635	CAGE_peak_1_at_DNAJB4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I077916	77916007	77916066	0.5	[{'connected_gene': 'NEXN', 'score': 550.31}, {'connected_gene': 'NEXN-AS1', 'score': 0.31}, {'connected_gene': 'DNAJB4', 'score': 0.21}]
chr1	GH01I077965	77965998	77967380	0.31	[{'connected_gene': 'NEXN', 'score': 5.54}, {'connected_gene': 'DNAJB4', 'score': 0.39}, {'connected_gene': 'FUBP1', 'score': 0.39}, {'connected_gene': 'NEXN-AS1', 'score': 0.18}]
chr1	GH01I077975	77975531	77981032	2.3	[{'connected_gene': 'GIPC2', 'score': 558.59}, {'connected_gene': 'DNAJB4', 'score': 550.77}, {'connected_gene': 'FUBP1', 'score': 550.77}, {'connected_gene': 'NSRP1P1', 'score': 16.28}, {'connected_gene': 'ENSG00000273338', 'score': 12.57}, {'connected_gene': 'USP33', 'score': 10.11}, {'connected_gene': 'ZZZ3', 'score': 9.74}, {'connected_gene': 'NEXN', 'score': 6.34}, {'connected_gene': 'NEXN-AS1', 'score': 0.17}]
chr1	GH01I077926	77926600	77927001	0.86	[{'connected_gene': 'GIPC2', 'score': 11.42}, {'connected_gene': 'RNA5SP21', 'score': 10.76}, {'connected_gene': 'MIGA1', 'score': 10.76}, {'connected_gene': 'ACTG1P21', 'score': 10.75}, {'connected_gene': 'NEXN-AS1', 'score': 0.28}, {'connected_gene': 'NEXN', 'score': 0.28}, {'connected_gene': 'DNAJB4', 'score': 0.23}]
chr1	GH01I077904	77904171	77905371	0.31	[{'connected_gene': 'MIGA1', 'score': 10.12}, {'connected_gene': 'ACTG1P21', 'score': 10.12}, {'connected_gene': 'RNA5SP21', 'score': 10.11}, {'connected_gene': 'ZZZ3', 'score': 9.75}, {'connected_gene': 'GIPC2', 'score': 7.95}, {'connected_gene': 'NEXN', 'score': 7.14}, {'connected_gene': 'NEXN-AS1', 'score': 0.37}, {'connected_gene': 'DNAJB4', 'score': 0.19}]
chr1	GH01I077680	77680898	77684896	2.1	[{'connected_gene': 'ZZZ3', 'score': 575.81}, {'connected_gene': 'FUBP1', 'score': 48.24}, {'connected_gene': 'RPL17P6', 'score': 33.4}, {'connected_gene': 'ENSG00000273338', 'score': 10.64}, {'connected_gene': 'NEXN', 'score': 10.3}, {'connected_gene': 'GIPC2', 'score': 7.92}, {'connected_gene': 'AK5', 'score': 7.31}, {'connected_gene': 'DNAJB4', 'score': 6.49}, {'connected_gene': 'RN7SL370P', 'score': 0.28}]
chr1	GH01I077945	77945486	77945689	0.51	[{'connected_gene': 'ZZZ3', 'score': 9.85}, {'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077947	77947335	77947604	0.71	[{'connected_gene': 'ZZZ3', 'score': 9.85}, {'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077946	77946449	77946668	0.51	[{'connected_gene': 'ZZZ3', 'score': 9.85}, {'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077952	77952257	77953141	0.31	[{'connected_gene': 'ZZZ3', 'score': 10.41}, {'connected_gene': 'ACTG1P21', 'score': 9.62}, {'connected_gene': 'RNA5SP21', 'score': 9.62}, {'connected_gene': 'MIGA1', 'score': 9.62}, {'connected_gene': 'NEXN', 'score': 5.56}, {'connected_gene': 'DNAJB4', 'score': 0.31}, {'connected_gene': 'FUBP1', 'score': 0.31}, {'connected_gene': 'NEXN-AS1', 'score': 0.21}]
chr1	GH01I077959	77959534	77962825	0.38	[{'connected_gene': 'USP33', 'score': 10.6}, {'connected_gene': 'NEXN', 'score': 6.31}, {'connected_gene': 'DNAJB4', 'score': 0.37}, {'connected_gene': 'FUBP1', 'score': 0.37}, {'connected_gene': 'NEXN-AS1', 'score': 0.19}]
chr1	GH01I077958	77958167	77959481	0.49	[{'connected_gene': 'USP33', 'score': 10.6}, {'connected_gene': 'GIPC2', 'score': 7.45}, {'connected_gene': 'NEXN', 'score': 4.47}, {'connected_gene': 'DNAJB4', 'score': 0.34}, {'connected_gene': 'FUBP1', 'score': 0.34}, {'connected_gene': 'NEXN-AS1', 'score': 0.2}]
chr1	GH01I077937	77937885	77939457	0.31	[{'connected_gene': 'USP33', 'score': 11.25}, {'connected_gene': 'RNA5SP21', 'score': 10.9}, {'connected_gene': 'MIGA1', 'score': 10.9}, {'connected_gene': 'ACTG1P21', 'score': 10.89}, {'connected_gene': 'RNU6-1102P', 'score': 10.58}, {'connected_gene': 'LOC100422537', 'score': 10.58}, {'connected_gene': 'NEXN', 'score': 6.19}, {'connected_gene': 'DNAJB4', 'score': 0.26}, {'connected_gene': 'NEXN-AS1', 'score': 0.25}]
chr1	GH01I077948	77948365	77948632	0.6	[{'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077949	77949176	77949325	0.69	[{'connected_gene': 'DNAJB4', 'score': 0.31}, {'connected_gene': 'FUBP1', 'score': 0.31}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}]
chr1	GH01I078002	78002645	78011212	2.76	[{'connected_gene': 'DNAJB4', 'score': 561.9}, {'connected_gene': 'NSRP1P1', 'score': 25.46}, {'connected_gene': 'FUBP1', 'score': 23.06}, {'connected_gene': 'ENSG00000273338', 'score': 13.03}, {'connected_gene': 'USP33', 'score': 11.91}, {'connected_gene': 'ZZZ3', 'score': 9.73}, {'connected_gene': 'GIPC2', 'score': 7.43}, {'connected_gene': 'NEXN', 'score': 6.05}, {'connected_gene': 'LOC100131495', 'score': 0.28}]
chr1	GH01I077991	77991094	77992082	0.49	[{'connected_gene': 'RNU6-1102P', 'score': 11.08}, {'connected_gene': 'LOC100422537', 'score': 11.08}, {'connected_gene': 'GIPC2', 'score': 0.39}, {'connected_gene': 'DNAJB4', 'score': 0.39}, {'connected_gene': 'ENSG00000273338', 'score': 0.39}]
chr1	GH01I077920	77920617	77920662	0.27	[{'connected_gene': 'RNU6-1102P', 'score': 11.05}, {'connected_gene': 'LOC100422537', 'score': 11.05}, {'connected_gene': 'ACTG1P21', 'score': 10.69}, {'connected_gene': 'RNA5SP21', 'score': 10.69}, {'connected_gene': 'MIGA1', 'score': 10.69}, {'connected_gene': 'NEXN', 'score': 8.23}, {'connected_gene': 'NEXN-AS1', 'score': 0.29}, {'connected_gene': 'DNAJB4', 'score': 0.22}]
chr1	GH01I077900	77900796	77900945	0.74	[{'connected_gene': 'ACTG1P21', 'score': 10.52}, {'connected_gene': 'RNA5SP21', 'score': 10.52}, {'connected_gene': 'MIGA1', 'score': 10.52}, {'connected_gene': 'ZZZ3', 'score': 9.65}, {'connected_gene': 'NEXN-AS1', 'score': 0.39}, {'connected_gene': 'NEXN', 'score': 0.39}, {'connected_gene': 'DNAJB4', 'score': 0.18}]