PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000521578	[[142402092, 142402184], [142431487, 142432445], [142435147, 142435240], [142437038, 142437169], [142437849, 142437924], [142441026, 142441394]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437169], [142437849, 142437924], [142441026, 142441144]]
ENST00000520105	[[142402094, 142402184], [142431487, 142432445], [142435147, 142435240], [142437038, 142437169], [142441026, 142441620]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437169], [142441026, 142441144]]
ENST00000523147	[[142402120, 142402184], [142431487, 142431710], [142432280, 142432445], [142435147, 142435240], [142437038, 142437051]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437051]]
ENST00000329397	[[142432006, 142432445], [142435147, 142435240], [142437038, 142437169], [142437849, 142437924], [142441026, 142441620]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437169], [142437849, 142437924], [142441026, 142441144]]
ENST00000349124	[[142432006, 142432445], [142435147, 142435240], [142437038, 142437169], [142441026, 142441620]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437169], [142441026, 142441144]]
ENST00000524028	[[142432117, 142432445], [142437883, 142437924], [142441026, 142441620]]	[[142432340, 142432445], [142437883, 142437924], [142441026, 142441144]]
NM_007079	[[142431487, 142432445], [142435147, 142435240], [142437038, 142437169], [142441026, 142442554]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437169], [142441026, 142441144]]
NM_032611	[[142431487, 142432445], [142435147, 142435240], [142437038, 142437169], [142437849, 142437924], [142441026, 142442554]]	[[142432340, 142432445], [142435147, 142435240], [142437038, 142437169], [142437849, 142437924], [142441026, 142441144]]

Promoter

Chrom	Start	End	Description
chr8	142402089	142402158	CAGE_peak_1_at_PTP4A3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I141398	141398443	141400010	1.29	[{'connected_gene': 'LINC01300', 'score': 4.8}, {'connected_gene': 'PTP4A3', 'score': 0.44}, {'connected_gene': 'ENSG00000244998', 'score': 0.44}, {'connected_gene': 'PIR43419', 'score': 0.39}]
chr8	GH08I141408	141408801	141409600	0.51	[{'connected_gene': 'LINC01300', 'score': 5.04}, {'connected_gene': 'PIR43419', 'score': 0.77}, {'connected_gene': 'PTP4A3', 'score': 0.37}, {'connected_gene': 'ENSG00000244998', 'score': 0.37}]
chr8	GH08I141400	141400179	141407348	1.74	[{'connected_gene': 'SLC45A4', 'score': 33.37}, {'connected_gene': 'DENND3', 'score': 26.12}, {'connected_gene': 'LINC01300', 'score': 6.36}, {'connected_gene': 'ENSG00000244998', 'score': 6.24}, {'connected_gene': 'TRAPPC9', 'score': 4.76}, {'connected_gene': 'PTP4A3', 'score': 3.78}, {'connected_gene': 'PIR43419', 'score': 0.39}]
chr8	GH08I141233	141233729	141236558	1.54	[{'connected_gene': 'SLC45A4', 'score': 45.84}, {'connected_gene': 'DENND3', 'score': 32.73}, {'connected_gene': 'ENSG00000253307', 'score': 7.91}, {'connected_gene': 'PTP4A3', 'score': 2.2}, {'connected_gene': 'ENSG00000280035', 'score': 0.44}]
chr8	GH08I141237	141237359	141240972	1.56	[{'connected_gene': 'SLC45A4', 'score': 57.84}, {'connected_gene': 'DENND3', 'score': 27.81}, {'connected_gene': 'ENSG00000253307', 'score': 7.39}, {'connected_gene': 'PTP4A3', 'score': 1.82}, {'connected_gene': 'ENSG00000280035', 'score': 0.39}]
chr8	GH08I141225	141225771	141229211	2.3	[{'connected_gene': 'SLC45A4', 'score': 606.65}, {'connected_gene': 'ENSG00000280035', 'score': 550.77}, {'connected_gene': 'DENND3', 'score': 35.27}, {'connected_gene': 'LOC105375787', 'score': 13.16}, {'connected_gene': 'ENSG00000253307', 'score': 13.16}, {'connected_gene': 'LINC01300', 'score': 12.58}, {'connected_gene': 'GPR20', 'score': 12.56}, {'connected_gene': 'PTP4A3', 'score': 1.57}]
chr8	GH08I141430	141430881	141431153	0.66	[{'connected_gene': 'TSNARE1', 'score': 9.66}, {'connected_gene': 'FP248', 'score': 0.77}, {'connected_gene': 'PIR43419', 'score': 0.37}, {'connected_gene': 'PTP4A3', 'score': 0.28}]
chr8	GH08I141393	141393435	141394550	0.9	[{'connected_gene': 'PTP4A3', 'score': 552.49}, {'connected_gene': 'ENSG00000244998', 'score': 550.77}, {'connected_gene': 'PTK2', 'score': 11.91}, {'connected_gene': 'SLC45A4', 'score': 10.31}, {'connected_gene': 'LINC01300', 'score': 5.43}, {'connected_gene': 'PIR43419', 'score': 0.37}]
chr8	GH08I141421	141421398	141421457	0.88	[{'connected_gene': 'PTP4A3', 'score': 550.31}, {'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'FP248', 'score': 0.39}]
chr8	GH08I141424	141421930	141421989	0.81	[{'connected_gene': 'PTP4A3', 'score': 550.31}, {'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'FP248', 'score': 0.39}]
chr8	GH08I141391	141391387	141393307	1.63	[{'connected_gene': 'LOC105375790', 'score': 550.77}, {'connected_gene': 'PTP4A3', 'score': 550.77}, {'connected_gene': 'ENSG00000244998', 'score': 550.77}, {'connected_gene': 'GPR20', 'score': 7.91}, {'connected_gene': 'LINC01300', 'score': 5.51}]
chr8	GH08I141431	141431541	141431730	0.98	[{'connected_gene': 'FP248', 'score': 0.77}, {'connected_gene': 'PIR43419', 'score': 0.37}, {'connected_gene': 'PTP4A3', 'score': 0.28}]
chr8	GH08I141427	141427164	141428304	0.52	[{'connected_gene': 'FP248', 'score': 11.3}, {'connected_gene': 'PIR43419', 'score': 0.39}, {'connected_gene': 'PTP4A3', 'score': 0.28}]
chr8	GH08I141419	141419716	141420636	0.2	[{'connected_gene': 'FP248', 'score': 11.63}, {'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'PTP4A3', 'score': 0.31}]
chr8	GH08I141422	141422133	141425633	0.49	[{'connected_gene': 'FP248', 'score': 11.38}, {'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'PTP4A3', 'score': 0.29}]
chr8	GH08I141093	141093360	141097271	1.55	[{'connected_gene': 'GC08M141090', 'score': 550.77}, {'connected_gene': 'DENND3', 'score': 44.83}, {'connected_gene': 'SLC45A4', 'score': 26.81}, {'connected_gene': 'LOC101927963', 'score': 12.2}, {'connected_gene': 'AGO2', 'score': 3.7}, {'connected_gene': 'PTP4A3', 'score': 1.45}, {'connected_gene': 'GPR20', 'score': 1.22}, {'connected_gene': 'GC08P141112', 'score': 0.37}]
chr8	GH08I141410	141410013	141419430	2.01	[{'connected_gene': 'PIR43419', 'score': 550.77}, {'connected_gene': 'FP248', 'score': 11.89}, {'connected_gene': 'TSNARE1', 'score': 9.66}, {'connected_gene': 'LINC01300', 'score': 5.78}, {'connected_gene': 'ENSG00000244998', 'score': 4.72}, {'connected_gene': 'PTP4A3', 'score': 3.08}]
chr8	GH08I141423	141420701	141420850	0.4	[{'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'FP248', 'score': 0.39}, {'connected_gene': 'PTP4A3', 'score': 0.31}]
chr8	GH08I141425	141421047	141421070	0.4	[{'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'FP248', 'score': 0.39}, {'connected_gene': 'PTP4A3', 'score': 0.31}]
chr8	GH08I141420	141420921	141420959	0.51	[{'connected_gene': 'PIR43419', 'score': 0.44}, {'connected_gene': 'FP248', 'score': 0.39}, {'connected_gene': 'PTP4A3', 'score': 0.31}]