PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000360586	[[55405667, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493521], [55493745, 55493795]]	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493505]]
ENST00000420358	[[55407876, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493745, 55493823]]	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475409]]
ENST00000567693	[[55407893, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55457930, 55458100]]	[[55454081, 55454105], [55457930, 55458100]]
ENST00000359167	[[55407893, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55457930, 55458100]]	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55457930, 55458010]]
ENST00000421192	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493521], [55493745, 55493807]]	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475409]]
ENST00000475379	[[55407988, 55408408], [55411049, 55411325]]	None
ENST00000455555	[[55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493769]]	[[55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493505]]
NM_007086	[[55405655, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493521], [55493745, 55493819]]	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493428, 55493505]]
NM_001008396	[[55405655, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475437], [55477026, 55477178], [55480202, 55480314], [55493745, 55493819]]	[[55408207, 55408408], [55411049, 55411188], [55422278, 55422412], [55423751, 55423922], [55424309, 55424353], [55429215, 55429269], [55429455, 55429571], [55429669, 55429890], [55433192, 55433324], [55433997, 55434112], [55448257, 55448414], [55451440, 55451578], [55453863, 55454105], [55455745, 55455930], [55457930, 55458118], [55462320, 55462531], [55467220, 55467362], [55467603, 55467710], [55468810, 55468903], [55473997, 55474093], [55475033, 55475084], [55475325, 55475409]]

Promoter

Chrom	Start	End	Description
chr14	55493763	55493824	CAGE_peak_1_at_WDHD1_5end
chr14	55494125	55494134	CAGE_peak_3_at_WDHD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I055050	55050724	55053888	2.29	[{'connected_gene': 'MAPK1IP1L', 'score': 576.27}, {'connected_gene': 'LOC105370509', 'score': 19.0}, {'connected_gene': 'WDHD1', 'score': 15.37}, {'connected_gene': 'ATG14', 'score': 9.87}, {'connected_gene': 'GC14M055059', 'score': 0.44}, {'connected_gene': 'GC14M055058', 'score': 0.44}, {'connected_gene': 'GC14M054989', 'score': 0.03}]
chr14	GH14I055598	55598572	55602286	1.92	[{'connected_gene': 'KTN1', 'score': 561.48}, {'connected_gene': 'KTN1-AS1', 'score': 24.86}, {'connected_gene': 'ENSG00000259318', 'score': 24.44}, {'connected_gene': 'ATG14', 'score': 19.35}, {'connected_gene': 'WDHD1', 'score': 15.08}, {'connected_gene': 'TBPL2', 'score': 10.62}, {'connected_gene': 'SOCS4', 'score': 9.74}, {'connected_gene': 'GC14P055652', 'score': 0.23}]
chr14	GH14I054487	54487531	54491346	2.06	[{'connected_gene': 'GMFB', 'score': 550.77}, {'connected_gene': 'ATG14', 'score': 58.94}, {'connected_gene': 'BMP4', 'score': 49.13}, {'connected_gene': 'MAPK1IP1L', 'score': 26.53}, {'connected_gene': 'SOCS4', 'score': 22.61}, {'connected_gene': 'ENSG00000259318', 'score': 22.36}, {'connected_gene': 'CGRRF1', 'score': 11.85}, {'connected_gene': 'CNIH1', 'score': 11.05}, {'connected_gene': 'WDHD1', 'score': 9.89}, {'connected_gene': 'GC14P054145', 'score': 0.05}]
chr14	GH14I054942	54942801	54943200	0.43	[{'connected_gene': 'GCH1', 'score': 11.15}, {'connected_gene': 'GC14P054925', 'score': 0.37}, {'connected_gene': 'GC14M055005', 'score': 0.21}, {'connected_gene': 'WDHD1', 'score': 0.18}]
chr14	GH14I054782	54782401	54786078	1.37	[{'connected_gene': 'SAMD4A', 'score': 11.58}, {'connected_gene': 'GCH1', 'score': 10.07}, {'connected_gene': 'WDHD1', 'score': 4.17}, {'connected_gene': 'GMFB', 'score': 3.02}, {'connected_gene': 'FBXO34', 'score': 2.38}, {'connected_gene': 'LGALS3', 'score': 2.23}, {'connected_gene': 'MAPK1IP1L', 'score': 1.26}, {'connected_gene': 'PIR45415', 'score': 0.44}, {'connected_gene': 'GC14P054860', 'score': 0.19}]
chr14	GH14I054786	54786803	54788673	0.2	[{'connected_gene': 'SAMD4A', 'score': 11.58}, {'connected_gene': 'GCH1', 'score': 6.02}, {'connected_gene': 'WDHD1', 'score': 4.44}, {'connected_gene': 'PIR45415', 'score': 0.44}, {'connected_gene': 'GC14P054860', 'score': 0.19}]
chr14	GH14I054976	54976118	54977290	0.63	[{'connected_gene': 'ATG14', 'score': 6.21}, {'connected_gene': 'GC14M055005', 'score': 0.31}, {'connected_gene': 'GC14P054925', 'score': 0.23}, {'connected_gene': 'WDHD1', 'score': 0.23}]
chr14	GH14I055025	55025394	55028859	2.08	[{'connected_gene': 'SOCS4', 'score': 550.77}, {'connected_gene': 'WDHD1', 'score': 550.77}, {'connected_gene': 'MAPK1IP1L', 'score': 24.83}, {'connected_gene': 'LOC105370509', 'score': 19.12}, {'connected_gene': 'ENSG00000259318', 'score': 11.86}, {'connected_gene': 'GC14M054989', 'score': 0.03}]
chr14	GH14I055024	55024801	55025000	0.2	[{'connected_gene': 'WDHD1', 'score': 0.77}, {'connected_gene': 'RPSAP13', 'score': 0.37}, {'connected_gene': 'GC14M054989', 'score': 0.03}]
chr14	GH14I054395	54395883	54398618	2.01	[{'connected_gene': 'CDKN3', 'score': 550.77}, {'connected_gene': 'MAPK1IP1L', 'score': 28.06}, {'connected_gene': 'SOCS4', 'score': 14.16}, {'connected_gene': 'WDHD1', 'score': 13.83}, {'connected_gene': 'BMP4', 'score': 11.3}, {'connected_gene': 'CNIH1', 'score': 7.68}, {'connected_gene': 'GC14P054145', 'score': 0.07}]
chr14	GH14I054439	54439769	54442244	2.02	[{'connected_gene': 'CNIH1', 'score': 562.1}, {'connected_gene': 'ATG14', 'score': 13.36}, {'connected_gene': 'WDHD1', 'score': 10.53}, {'connected_gene': 'CDKN3', 'score': 0.26}, {'connected_gene': 'GC14P054145', 'score': 0.06}]