PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000532354	[[6340175, 6340794], [6340886, 6341292]]	None
ENST00000303927	[[6340175, 6340794], [6341322, 6341877]]	[[6340392, 6340794], [6341322, 6341706]]
ENST00000524852	[[6340359, 6340901], [6341322, 6341385]]	None
ENST00000530979	[[6340373, 6340794], [6340886, 6340982], [6341322, 6341762]]	[[6340392, 6340794], [6340886, 6340982], [6341322, 6341706]]

Promoter

Chrom	Start	End	Description
chr11	6340965	6340985	CAGE_peak_3_at_PRKCDBP_5end
chr11	6340994	6341012	CAGE_peak_2_at_PRKCDBP_5end
chr11	6341016	6341030	CAGE_peak_4_at_PRKCDBP_5end
chr11	6341050	6341059	CAGE_peak_7_at_PRKCDBP_5end
chr11	6341110	6341122	CAGE_peak_6_at_PRKCDBP_5end
chr11	6341147	6341156	CAGE_peak_14_at_PRKCDBP_5end
chr11	6341282	6341323	CAGE_peak_5_at_PRKCDBP_5end
chr11	6341326	6341337	CAGE_peak_12_at_PRKCDBP_5end
chr11	6341347	6341357	CAGE_peak_11_at_PRKCDBP_5end
chr11	6341724	6341760	CAGE_peak_1_at_PRKCDBP_5end
chr11	6341844	6341852	CAGE_peak_9_at_PRKCDBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I006281	6281340	6282160	0.59	[{'connected_gene': 'CCKBR', 'score': 11.05}, {'connected_gene': 'CAVIN3', 'score': 10.35}, {'connected_gene': 'OR52B2', 'score': 9.95}, {'connected_gene': 'OR56A1', 'score': 9.76}, {'connected_gene': 'FAM160A2', 'score': 9.6}, {'connected_gene': 'C11orf42', 'score': 9.54}, {'connected_gene': 'OR52W1', 'score': 9.53}, {'connected_gene': 'GC11M006277', 'score': 0.77}, {'connected_gene': 'ENSG00000270435', 'score': 0.37}]
chr11	GH11I006218	6218574	6220117	0.79	[{'connected_gene': 'FAM160A2', 'score': 16.72}, {'connected_gene': 'OR52B2', 'score': 9.44}, {'connected_gene': 'CAVIN3', 'score': 9.06}, {'connected_gene': 'TPP1', 'score': 5.61}, {'connected_gene': 'C11orf42', 'score': 0.39}]
chr11	GH11I006427	6427512	6428021	0.38	[{'connected_gene': 'SMPD1', 'score': 10.97}, {'connected_gene': 'CAVIN3', 'score': 9.07}, {'connected_gene': 'APBB1', 'score': 0.44}, {'connected_gene': 'HPX', 'score': 0.39}]
chr11	GH11I006400	6400611	6406128	1.68	[{'connected_gene': 'APBB1', 'score': 557.12}, {'connected_gene': 'SMPD1', 'score': 13.39}, {'connected_gene': 'HPX', 'score': 10.85}, {'connected_gene': 'TIMM10B', 'score': 10.26}, {'connected_gene': 'ARFIP2', 'score': 10.26}, {'connected_gene': 'CAVIN3', 'score': 9.44}, {'connected_gene': 'GC11P006400', 'score': 0.77}, {'connected_gene': 'PIR40798', 'score': 0.44}]
chr11	GH11I006371	6371635	6372302	0.38	[{'connected_gene': 'APBB1', 'score': 11.99}, {'connected_gene': 'CAVIN3', 'score': 10.16}, {'connected_gene': 'TIMM10B', 'score': 9.54}, {'connected_gene': 'ARFIP2', 'score': 9.54}, {'connected_gene': 'OR56A1', 'score': 9.33}, {'connected_gene': 'ENSG00000254443', 'score': 0.44}, {'connected_gene': 'SMPD1', 'score': 0.37}]
chr11	GH11I006217	6217356	6217666	0.2	[{'connected_gene': 'OR52B2', 'score': 9.44}, {'connected_gene': 'CAVIN3', 'score': 9.06}, {'connected_gene': 'C11orf42', 'score': 0.39}, {'connected_gene': 'FAM160A2', 'score': 0.37}]
chr11	GH11I006601	6601303	6613689	2.31	[{'connected_gene': 'RRP8', 'score': 588.3}, {'connected_gene': 'ILK', 'score': 569.17}, {'connected_gene': 'TAF10', 'score': 550.44}, {'connected_gene': 'FAM160A2', 'score': 23.84}, {'connected_gene': 'DNHD1', 'score': 13.41}, {'connected_gene': 'ENSG00000254641', 'score': 12.85}, {'connected_gene': 'DCHS1', 'score': 10.6}, {'connected_gene': 'CAVIN3', 'score': 10.31}, {'connected_gene': 'ENSG00000254400', 'score': 0.77}, {'connected_gene': 'PIR55036', 'score': 0.44}, {'connected_gene': 'TPP1', 'score': 0.39}]
chr11	GH11I006239	6239040	6239099	0.61	[{'connected_gene': 'CNGA4', 'score': 550.77}, {'connected_gene': 'CCKBR', 'score': 11.19}, {'connected_gene': 'C11orf42', 'score': 10.9}, {'connected_gene': 'OR52W1', 'score': 10.88}, {'connected_gene': 'CAVIN3', 'score': 9.54}, {'connected_gene': 'GC11M006236', 'score': 0.44}]
chr11	GH11I006328	6328531	6328680	0.2	[{'connected_gene': 'OR56A1', 'score': 9.83}, {'connected_gene': 'GC11M006313', 'score': 0.77}, {'connected_gene': 'CAVIN3', 'score': 0.44}, {'connected_gene': 'LOC101927825', 'score': 0.39}]
chr11	GH11I006287	6287609	6289692	0.57	[{'connected_gene': 'CAVIN3', 'score': 11.29}, {'connected_gene': 'CCKBR', 'score': 10.99}, {'connected_gene': 'FAM160A2', 'score': 10.16}, {'connected_gene': 'C11orf42', 'score': 9.99}, {'connected_gene': 'OR52W1', 'score': 9.98}, {'connected_gene': 'OR52B2', 'score': 9.98}, {'connected_gene': 'OR56A1', 'score': 9.91}, {'connected_gene': 'ENSG00000270435', 'score': 0.44}, {'connected_gene': 'GC11M006277', 'score': 0.39}]
chr11	GH11I006317	6317426	6324382	1.52	[{'connected_gene': 'CAVIN3', 'score': 575.28}, {'connected_gene': 'FAM160A2', 'score': 16.15}, {'connected_gene': 'RRP8', 'score': 12.01}, {'connected_gene': 'OR56A1', 'score': 9.84}, {'connected_gene': 'TAF10', 'score': 5.19}, {'connected_gene': 'LOC101927825', 'score': 0.77}, {'connected_gene': 'GC11M006313', 'score': 0.39}]
chr11	GH11I006354	6354628	6355409	0.56	[{'connected_gene': 'CAVIN3', 'score': 11.36}, {'connected_gene': 'OR52N2', 'score': 4.39}, {'connected_gene': 'ENSG00000254443', 'score': 0.44}, {'connected_gene': 'PIR52604', 'score': 0.44}]
chr11	GH11I006325	6325818	6328466	0.2	[{'connected_gene': 'CAVIN3', 'score': 11.83}, {'connected_gene': 'OR56A1', 'score': 9.83}, {'connected_gene': 'GC11M006313', 'score': 0.44}, {'connected_gene': 'LOC101927825', 'score': 0.44}]
chr11	GH11I006356	6356379	6358380	0.92	[{'connected_gene': 'CAVIN3', 'score': 10.26}, {'connected_gene': 'ENSG00000254443', 'score': 0.44}, {'connected_gene': 'PIR52604', 'score': 0.39}]
chr11	GH11I006315	6315735	6316228	0.82	[{'connected_gene': 'LOC101927825', 'score': 550.77}, {'connected_gene': 'OR56A1', 'score': 10.07}, {'connected_gene': 'OR52B2', 'score': 9.17}, {'connected_gene': 'CAVIN3', 'score': 6.94}, {'connected_gene': 'ENSG00000270435', 'score': 0.37}, {'connected_gene': 'GC11M006313', 'score': 0.37}]
chr11	GH11I006249	6249588	6250663	1.02	[{'connected_gene': 'GC11M006236', 'score': 550.77}, {'connected_gene': 'C11orf42', 'score': 10.87}, {'connected_gene': 'OR52W1', 'score': 10.86}, {'connected_gene': 'CAVIN3', 'score': 10.45}, {'connected_gene': 'OR56A1', 'score': 9.51}, {'connected_gene': 'CCKBR', 'score': 0.44}]
chr11	GH11I006362	6362205	6363821	0.83	[{'connected_gene': 'ENSG00000254443', 'score': 550.77}, {'connected_gene': 'CAVIN3', 'score': 11.89}, {'connected_gene': 'SMPD1', 'score': 11.61}, {'connected_gene': 'APBB1', 'score': 11.52}, {'connected_gene': 'OR56A1', 'score': 10.0}]
chr11	GH11I006298	6298711	6298860	0.49	[{'connected_gene': 'ENSG00000270435', 'score': 550.77}, {'connected_gene': 'CAVIN3', 'score': 11.04}, {'connected_gene': 'OR56A1', 'score': 9.35}, {'connected_gene': 'LOC101927825', 'score': 0.37}]