PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377669	[[74260225, 74269808], [74289504, 74289662], [74339074, 74339137], [74387288, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569186]]	[[74269626, 74269808], [74289504, 74289662], [74339074, 74339137], [74387288, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569159]]
ENST00000377666	[[74269535, 74269808], [74289504, 74289662], [74339074, 74339137], [74387288, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569190], [74708108, 74708394]]	[[74269626, 74269808], [74289504, 74289662], [74339074, 74339137], [74387288, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569159]]
ENST00000472022	[[74387009, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569193]]	None
NM_007249	[[74260148, 74269808], [74289504, 74289662], [74339074, 74339137], [74387288, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569190], [74707875, 74708066]]	[[74269626, 74269808], [74289504, 74289662], [74339074, 74339137], [74387288, 74387424], [74419963, 74420510], [74518117, 74518207], [74569126, 74569159]]

Promoter

Chrom	Start	End	Description
chr13	74707894	74707947	CAGE_peak_6_at_KLF12_5end
chr13	74708029	74708077	CAGE_peak_2_at_KLF12_5end
chr13	74708208	74708220	CAGE_peak_12_at_KLF12_5end
chr13	74708246	74708264	CAGE_peak_8_at_KLF12_5end
chr13	74708269	74708291	CAGE_peak_7_at_KLF12_5end
chr13	74708372	74708409	CAGE_peak_4_at_KLF12_5end
chr13	74708411	74708436	CAGE_peak_3_at_KLF12_5end
chr13	74708475	74708499	CAGE_peak_5_at_KLF12_5end
chr13	74708504	74708549	CAGE_peak_1_at_KLF12_5end
chr13	74708552	74708573	CAGE_peak_9_at_KLF12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I073752	73752672	73752745	0.26	[{'connected_gene': 'KLF12', 'score': 3.6}, {'connected_gene': 'ENSG00000280348', 'score': 0.25}, {'connected_gene': 'LINC00393', 'score': 0.16}]
chr13	GH13I073764	73764619	73768591	1.33	[{'connected_gene': 'KLF12', 'score': 9.86}, {'connected_gene': 'ENSG00000280348', 'score': 0.29}, {'connected_gene': 'LINC00393', 'score': 0.15}]
chr13	GH13I073701	73701225	73704592	0.9	[{'connected_gene': 'KLF12', 'score': 7.88}, {'connected_gene': 'LINC00393', 'score': 0.26}, {'connected_gene': 'ENSG00000280348', 'score': 0.15}]
chr13	GH13I074056	74056863	74057898	0.97	[{'connected_gene': 'KLF12', 'score': 4.49}, {'connected_gene': 'GC13M074036', 'score': 0.37}, {'connected_gene': 'GC13M074126', 'score': 0.19}]
chr13	GH13I074024	74024684	74028329	1.25	[{'connected_gene': 'KLF12', 'score': 4.5}, {'connected_gene': 'GC13M074036', 'score': 0.39}, {'connected_gene': 'ENSG00000279463', 'score': 0.09}]
chr13	GH13I073942	73942706	73944376	0.38	[{'connected_gene': 'KLF12', 'score': 6.56}, {'connected_gene': 'GC13M074036', 'score': 0.15}, {'connected_gene': 'ENSG00000279463', 'score': 0.15}]
chr13	GH13I074022	74022832	74024211	0.38	[{'connected_gene': 'KLF12', 'score': 4.49}, {'connected_gene': 'GC13M074036', 'score': 0.37}, {'connected_gene': 'ENSG00000279463', 'score': 0.1}]
chr13	GH13I074127	74127724	74137147	1.74	[{'connected_gene': 'KLF12', 'score': 23.65}, {'connected_gene': 'GC13M074126', 'score': 0.77}, {'connected_gene': 'GC13P074152', 'score': 0.34}]
chr13	GH13I074060	74060745	74064535	1.06	[{'connected_gene': 'KLF12', 'score': 5.07}, {'connected_gene': 'GC13M074036', 'score': 0.34}, {'connected_gene': 'GC13M074126', 'score': 0.2}]
chr13	GH13I073937	73937989	73939143	0.49	[{'connected_gene': 'KLF12', 'score': 6.55}, {'connected_gene': 'ENSG00000279463', 'score': 0.16}, {'connected_gene': 'GC13M074036', 'score': 0.15}]
chr13	GH13I073933	73933508	73935017	0.98	[{'connected_gene': 'KLF12', 'score': 9.89}, {'connected_gene': 'ENSG00000279463', 'score': 0.17}, {'connected_gene': 'GC13M074036', 'score': 0.15}]
chr13	GH13I073945	73945801	73946200	0.2	[{'connected_gene': 'KLF12', 'score': 6.54}, {'connected_gene': 'GC13M074036', 'score': 0.16}, {'connected_gene': 'ENSG00000279463', 'score': 0.15}]
chr13	GH13I074052	74052303	74053191	0.62	[{'connected_gene': 'KLF12', 'score': 4.87}, {'connected_gene': 'GC13M074036', 'score': 0.39}, {'connected_gene': 'GC13M074126', 'score': 0.18}]
chr13	GH13I074046	74046646	74049337	0.94	[{'connected_gene': 'KLF12', 'score': 5.56}, {'connected_gene': 'GC13M074036', 'score': 0.44}, {'connected_gene': 'GC13M074126', 'score': 0.18}]
chr13	GH13I074058	74058553	74059460	0.2	[{'connected_gene': 'KLF12', 'score': 4.7}, {'connected_gene': 'GC13M074036', 'score': 0.34}, {'connected_gene': 'GC13M074126', 'score': 0.2}]
chr13	GH13I073870	73870092	73872306	0.97	[{'connected_gene': 'KLF12', 'score': 2.91}, {'connected_gene': 'ENSG00000279463', 'score': 0.31}, {'connected_gene': 'GC13M074036', 'score': 0.1}]
chr13	GH13I074168	74168304	74168453	0.72	[{'connected_gene': 'KLF12', 'score': 550.77}, {'connected_gene': 'GC13P074217', 'score': 0.25}]
chr13	GH13I073713	73713648	73716735	0.93	[{'connected_gene': 'LINC00393', 'score': 0.23}, {'connected_gene': 'ENSG00000280348', 'score': 0.18}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I073686	73686086	73686330	0.4	[{'connected_gene': 'LINC00393', 'score': 0.34}, {'connected_gene': 'ENSG00000280348', 'score': 0.14}, {'connected_gene': 'KLF12', 'score': 0.04}]
chr13	GH13I073708	73708504	73708653	0.62	[{'connected_gene': 'LINC00393', 'score': 0.25}, {'connected_gene': 'ENSG00000280348', 'score': 0.16}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I073717	73717083	73718001	0.63	[{'connected_gene': 'LINC00393', 'score': 0.22}, {'connected_gene': 'ENSG00000280348', 'score': 0.18}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I073721	73721755	73722633	0.85	[{'connected_gene': 'LINC00393', 'score': 0.21}, {'connected_gene': 'ENSG00000280348', 'score': 0.18}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I074286	74286756	74291232	1.41	[{'connected_gene': 'RNY1P5', 'score': 550.77}, {'connected_gene': 'GC13M074290', 'score': 550.77}, {'connected_gene': 'KLF12', 'score': 8.57}, {'connected_gene': 'GC13M074272', 'score': 0.37}]
chr13	GH13I074190	74190476	74192716	0.49	[{'connected_gene': 'LINC00402', 'score': 10.76}, {'connected_gene': 'KLF12', 'score': 0.34}, {'connected_gene': 'GC13P074217', 'score': 0.31}]
chr13	GH13I074186	74186984	74188486	0.66	[{'connected_gene': 'LINC00402', 'score': 6.03}, {'connected_gene': 'KLF12', 'score': 0.37}, {'connected_gene': 'GC13P074217', 'score': 0.29}]
chr13	GH13I074194	74194642	74195563	0.2	[{'connected_gene': 'LINC00402', 'score': 4.61}, {'connected_gene': 'GC13P074217', 'score': 0.34}, {'connected_gene': 'KLF12', 'score': 0.31}]
chr13	GH13I074199	74199728	74201124	0.2	[{'connected_gene': 'LINC00402', 'score': 11.12}, {'connected_gene': 'GC13P074217', 'score': 0.37}, {'connected_gene': 'KLF12', 'score': 0.29}]
chr13	GH13I074183	74183606	74185092	0.2	[{'connected_gene': 'LINC00402', 'score': 5.36}, {'connected_gene': 'KLF12', 'score': 0.37}, {'connected_gene': 'GC13P074217', 'score': 0.29}]
chr13	GH13I074210	74210118	74212430	1.16	[{'connected_gene': 'LINC00402', 'score': 11.4}, {'connected_gene': 'KLF12', 'score': 5.48}, {'connected_gene': 'GC13P074217', 'score': 0.44}]
chr13	GH13I073848	73848904	73849711	0.56	[{'connected_gene': 'ENSG00000279463', 'score': 0.77}, {'connected_gene': 'GC13M074036', 'score': 0.09}, {'connected_gene': 'KLF12', 'score': 0.06}]
chr13	GH13I073944	73944724	73944873	0.2	[{'connected_gene': 'GC13M074036', 'score': 0.16}, {'connected_gene': 'ENSG00000279463', 'score': 0.15}, {'connected_gene': 'KLF12', 'score': 0.07}]
chr13	GH13I074069	74069704	74070922	0.71	[{'connected_gene': 'GC13M074036', 'score': 0.29}, {'connected_gene': 'GC13M074126', 'score': 0.22}, {'connected_gene': 'KLF12', 'score': 0.15}]
chr13	GH13I073967	73967824	73967973	0.6	[{'connected_gene': 'GC13M074036', 'score': 0.19}, {'connected_gene': 'ENSG00000279463', 'score': 0.13}, {'connected_gene': 'KLF12', 'score': 0.08}]
chr13	GH13I074040	74040324	74040600	1.05	[{'connected_gene': 'GC13M074036', 'score': 550.77}, {'connected_gene': 'GC13M074126', 'score': 0.17}, {'connected_gene': 'KLF12', 'score': 0.13}]
chr13	GH13I074113	74113831	74116354	0.86	[{'connected_gene': 'GC13M074126', 'score': 0.39}, {'connected_gene': 'KLF12', 'score': 0.23}, {'connected_gene': 'GC13M074036', 'score': 0.18}]
chr13	GH13I073914	73914201	73914400	0.43	[{'connected_gene': 'ENSG00000279463', 'score': 0.2}, {'connected_gene': 'GC13M074036', 'score': 0.13}, {'connected_gene': 'KLF12', 'score': 0.07}]
chr13	GH13I074074	74074586	74075366	0.4	[{'connected_gene': 'GC13M074036', 'score': 0.28}, {'connected_gene': 'GC13M074126', 'score': 0.23}, {'connected_gene': 'KLF12', 'score': 0.16}]
chr13	GH13I073857	73857204	73857353	0.2	[{'connected_gene': 'ENSG00000279463', 'score': 0.39}, {'connected_gene': 'GC13M074036', 'score': 0.09}, {'connected_gene': 'KLF12', 'score': 0.06}]
chr13	GH13I074082	74082313	74083454	0.7	[{'connected_gene': 'GC13M074036', 'score': 0.26}, {'connected_gene': 'GC13M074126', 'score': 0.25}, {'connected_gene': 'KLF12', 'score': 0.17}]
chr13	GH13I074021	74021644	74021773	0.2	[{'connected_gene': 'GC13M074036', 'score': 0.37}, {'connected_gene': 'KLF12', 'score': 0.11}, {'connected_gene': 'ENSG00000279463', 'score': 0.1}]
chr13	GH13I073835	73835264	73835433	0.68	[{'connected_gene': 'ENSG00000279463', 'score': 0.44}, {'connected_gene': 'ENSG00000280348', 'score': 0.28}, {'connected_gene': 'KLF12', 'score': 0.06}]
chr13	GH13I073803	73803166	73803419	0.22	[{'connected_gene': 'ENSG00000280348', 'score': 0.77}, {'connected_gene': 'ENSG00000279463', 'score': 0.26}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I073893	73893017	73893395	0.4	[{'connected_gene': 'ENSG00000279463', 'score': 0.25}, {'connected_gene': 'GC13M074036', 'score': 0.11}, {'connected_gene': 'KLF12', 'score': 0.06}]
chr13	GH13I074071	74071690	74072372	0.2	[{'connected_gene': 'GC13M074036', 'score': 0.29}, {'connected_gene': 'GC13M074126', 'score': 0.22}, {'connected_gene': 'KLF12', 'score': 0.15}]
chr13	GH13I074068	74068662	74069108	0.4	[{'connected_gene': 'GC13M074036', 'score': 0.31}, {'connected_gene': 'GC13M074126', 'score': 0.22}, {'connected_gene': 'KLF12', 'score': 0.15}]
chr13	GH13I074090	74090278	74092047	0.4	[{'connected_gene': 'GC13M074126', 'score': 0.28}, {'connected_gene': 'GC13M074036', 'score': 0.23}, {'connected_gene': 'KLF12', 'score': 0.18}]
chr13	GH13I074028	74028793	74030866	0.2	[{'connected_gene': 'GC13M074036', 'score': 0.44}, {'connected_gene': 'KLF12', 'score': 0.12}, {'connected_gene': 'ENSG00000279463', 'score': 0.09}]
chr13	GH13I074077	74077704	74077853	0.4	[{'connected_gene': 'GC13M074036', 'score': 0.28}, {'connected_gene': 'GC13M074126', 'score': 0.23}, {'connected_gene': 'KLF12', 'score': 0.16}]
chr13	GH13I073913	73913204	73913353	0.38	[{'connected_gene': 'ENSG00000279463', 'score': 0.2}, {'connected_gene': 'GC13M074036', 'score': 0.13}, {'connected_gene': 'KLF12', 'score': 0.07}]
chr13	GH13I074104	74104286	74106200	0.31	[{'connected_gene': 'GC13M074126', 'score': 0.34}, {'connected_gene': 'KLF12', 'score': 0.21}, {'connected_gene': 'GC13M074036', 'score': 0.2}]
chr13	GH13I074055	74055749	74056406	0.31	[{'connected_gene': 'GC13M074036', 'score': 0.37}, {'connected_gene': 'GC13M074126', 'score': 0.19}, {'connected_gene': 'KLF12', 'score': 0.14}]
chr13	GH13I074035	74035923	74038116	0.76	[{'connected_gene': 'GC13M074036', 'score': 550.77}, {'connected_gene': 'KLF12', 'score': 0.12}, {'connected_gene': 'ENSG00000279463', 'score': 0.08}]
chr13	GH13I074126	74126343	74127624	0.2	[{'connected_gene': 'GC13M074126', 'score': 550.77}, {'connected_gene': 'KLF12', 'score': 0.26}, {'connected_gene': 'GC13M074036', 'score': 0.17}]
chr13	GH13I074203	74203287	74207600	0.63	[{'connected_gene': 'GC13P074217', 'score': 0.39}, {'connected_gene': 'KLF12', 'score': 0.28}]
chr13	GH13I074092	74092833	74093217	0.4	[{'connected_gene': 'GC13M074126', 'score': 0.29}, {'connected_gene': 'GC13M074036', 'score': 0.23}, {'connected_gene': 'KLF12', 'score': 0.18}]
chr13	GH13I073936	73936124	73936273	0.2	[{'connected_gene': 'ENSG00000279463', 'score': 0.16}, {'connected_gene': 'GC13M074036', 'score': 0.15}, {'connected_gene': 'KLF12', 'score': 0.07}]
chr13	GH13I073952	73952301	73953150	0.2	[{'connected_gene': 'GC13M074036', 'score': 0.17}, {'connected_gene': 'ENSG00000279463', 'score': 0.14}, {'connected_gene': 'KLF12', 'score': 0.08}]
chr13	GH13I073809	73809704	73809833	0.43	[{'connected_gene': 'ENSG00000280348', 'score': 0.44}, {'connected_gene': 'ENSG00000279463', 'score': 0.28}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I073828	73828904	73829337	0.2	[{'connected_gene': 'ENSG00000279463', 'score': 0.37}, {'connected_gene': 'ENSG00000280348', 'score': 0.31}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I074049	74049605	74050444	0.2	[{'connected_gene': 'GC13M074036', 'score': 0.39}, {'connected_gene': 'GC13M074126', 'score': 0.18}, {'connected_gene': 'KLF12', 'score': 0.13}]
chr13	GH13I074100	74100692	74102064	0.38	[{'connected_gene': 'GC13M074126', 'score': 0.31}, {'connected_gene': 'GC13M074036', 'score': 0.21}, {'connected_gene': 'KLF12', 'score': 0.2}]
chr13	GH13I073984	73984780	73985824	0.49	[{'connected_gene': 'GC13M074036', 'score': 0.23}, {'connected_gene': 'ENSG00000279463', 'score': 0.11}, {'connected_gene': 'KLF12', 'score': 0.09}]
chr13	GH13I073754	73754824	73754973	0.54	[{'connected_gene': 'ENSG00000280348', 'score': 0.25}, {'connected_gene': 'LINC00393', 'score': 0.16}, {'connected_gene': 'KLF12', 'score': 0.05}]
chr13	GH13I073740	73740686	73741639	0.2	[{'connected_gene': 'ENSG00000280348', 'score': 0.22}, {'connected_gene': 'LINC00393', 'score': 0.18}, {'connected_gene': 'KLF12', 'score': 0.04}]
chr13	GH13I073782	73782944	73783093	0.46	[{'connected_gene': 'ENSG00000280348', 'score': 0.37}, {'connected_gene': 'LINC00393', 'score': 0.13}, {'connected_gene': 'KLF12', 'score': 0.05}]