PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000394942	[[64063756, 64066691], [64108521, 64108579]]	[[64065496, 64066660]]
ENST00000267522	[[64065219, 64066691], [64091645, 64091751], [64108016, 64108125]]	[[64065496, 64066660]]
ENST00000554717	[[64065980, 64066691], [64091645, 64091751], [64108016, 64108125], [64108521, 64108571]]	[[64065980, 64066660]]
NM_001258272	[[64063756, 64066691], [64091645, 64091751], [64108016, 64108641]]	[[64065496, 64066660]]
NM_001008726	[[64063756, 64066691], [64091645, 64091751], [64108016, 64108125], [64108521, 64108641]]	[[64065496, 64066660]]
NM_080666	[[64063756, 64066691], [64091645, 64091751], [64108521, 64108641]]	[[64065496, 64066660]]

Promoter

Chrom	Start	End	Description
chr14	64108203	64108217	CAGE_peak_2_at_WDR89_5end
chr14	64108359	64108365	CAGE_peak_9_at_WDR89_5end
chr14	64108537	64108597	CAGE_peak_1_at_WDR89_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I063704	63704782	63706368	0.74	[{'connected_gene': 'SGPP1', 'score': 12.43}, {'connected_gene': 'RNU7-116P', 'score': 12.38}, {'connected_gene': 'WDR89', 'score': 5.54}, {'connected_gene': 'GC14P063658', 'score': 0.25}]
chr14	GH14I064324	64324470	64325484	0.67	[{'connected_gene': 'ZBTB25', 'score': 16.12}, {'connected_gene': 'ENSG00000214770', 'score': 13.59}, {'connected_gene': 'WDR89', 'score': 12.62}, {'connected_gene': 'ZBTB1', 'score': 9.9}, {'connected_gene': 'GC14M064323', 'score': 0.77}, {'connected_gene': 'ESR2', 'score': 0.39}, {'connected_gene': 'PIR41332', 'score': 0.15}]
chr14	GH14I063362	63362291	63363307	0.66	[{'connected_gene': 'KCNH5', 'score': 5.42}, {'connected_gene': 'PPP2R5E', 'score': 4.78}, {'connected_gene': 'GPHB5', 'score': 2.03}, {'connected_gene': 'WDR89', 'score': 1.55}, {'connected_gene': 'GC14P063451', 'score': 0.17}]
chr14	GH14I063852	63852343	63858827	2.61	[{'connected_gene': 'SYNE2', 'score': 581.52}, {'connected_gene': 'ENSG00000258824', 'score': 11.28}, {'connected_gene': 'WDR89', 'score': 10.09}, {'connected_gene': 'ENSG00000214770', 'score': 9.75}, {'connected_gene': 'PPP2R5E', 'score': 1.94}, {'connected_gene': 'GC14P064073', 'score': 0.08}]
chr14	GH14I063633	63633023	63633172	0.6	[{'connected_gene': 'ESR2', 'score': 4.47}, {'connected_gene': 'RNU6-1162P', 'score': 0.77}, {'connected_gene': 'WDR89', 'score': 0.44}]
chr14	GH14I063745	63745648	63749706	1.29	[{'connected_gene': 'WDR89', 'score': 4.67}, {'connected_gene': 'SGPP1', 'score': 2.01}, {'connected_gene': 'ENSG00000258411', 'score': 0.39}, {'connected_gene': 'RNU7-116P', 'score': 0.39}]
chr14	GH14I063752	63752697	63753365	0.82	[{'connected_gene': 'WDR89', 'score': 5.49}, {'connected_gene': 'ENSG00000258411', 'score': 0.44}, {'connected_gene': 'RNU7-116P', 'score': 0.37}]
chr14	GH14I063639	63639930	63643660	2.32	[{'connected_gene': 'WDR89', 'score': 557.54}, {'connected_gene': 'LOC105370532', 'score': 550.77}, {'connected_gene': 'ZBTB1', 'score': 26.79}, {'connected_gene': 'LOC102723809', 'score': 23.02}, {'connected_gene': 'GCATP1', 'score': 4.71}, {'connected_gene': 'SYNE2', 'score': 1.72}, {'connected_gene': 'RNU6-1162P', 'score': 0.39}]
chr14	GH14I063647	63647466	63648200	0.52	[{'connected_gene': 'WDR89', 'score': 4.9}, {'connected_gene': 'ENSG00000200693', 'score': 0.77}, {'connected_gene': 'GC14M063652', 'score': 0.77}, {'connected_gene': 'LOC105370532', 'score': 0.44}]
chr14	GH14I064538	64538294	64543199	2.18	[{'connected_gene': 'LOC102723809', 'score': 574.55}, {'connected_gene': 'HSPA2', 'score': 550.77}, {'connected_gene': 'ZBTB25', 'score': 22.78}, {'connected_gene': 'ZBTB1', 'score': 21.64}, {'connected_gene': 'PPP1R36', 'score': 13.91}, {'connected_gene': 'ENSG00000214770', 'score': 11.72}, {'connected_gene': 'GCATP1', 'score': 11.12}, {'connected_gene': 'WDR89', 'score': 11.08}, {'connected_gene': 'SYNE2', 'score': 10.13}, {'connected_gene': 'PLEKHG3', 'score': 8.23}]
chr14	GH14I063675	63675735	63679245	1.15	[{'connected_gene': 'ENSG00000200693', 'score': 12.73}, {'connected_gene': 'ENSG00000214770', 'score': 11.55}, {'connected_gene': 'SGPP1', 'score': 11.45}, {'connected_gene': 'TEX21P', 'score': 11.44}, {'connected_gene': 'RNU7-116P', 'score': 11.44}, {'connected_gene': 'ZBTB25', 'score': 10.24}, {'connected_gene': 'SYNE2', 'score': 9.88}, {'connected_gene': 'ENSG00000202182', 'score': 9.88}, {'connected_gene': 'WDR89', 'score': 5.7}, {'connected_gene': 'GC14P063658', 'score': 0.37}]
chr14	GH14I063718	63718737	63719046	0.28	[{'connected_gene': 'ENSG00000200693', 'score': 11.77}, {'connected_gene': 'SGPP1', 'score': 3.5}, {'connected_gene': 'SYNE2', 'score': 1.56}, {'connected_gene': 'PPP2R5E', 'score': 1.55}, {'connected_gene': 'WDR89', 'score': 1.38}, {'connected_gene': 'GC14P063658', 'score': 0.21}]
chr14	GH14I063621	63621696	63622608	0.31	[{'connected_gene': 'GC14P063622', 'score': 550.77}, {'connected_gene': 'ENSG00000206822', 'score': 550.77}, {'connected_gene': 'SGPP1', 'score': 11.25}, {'connected_gene': 'RNU7-116P', 'score': 11.24}, {'connected_gene': 'GC14P063631', 'score': 0.44}, {'connected_gene': 'WDR89', 'score': 0.37}]
chr14	GH14I063648	63648777	63652013	0.96	[{'connected_gene': 'ENSG00000200693', 'score': 550.77}, {'connected_gene': 'GC14M063652', 'score': 550.77}, {'connected_gene': 'WDR89', 'score': 10.84}, {'connected_gene': 'SYNE2', 'score': 8.77}, {'connected_gene': 'LOC105370532', 'score': 0.44}]
chr14	GH14I063615	63615003	63615232	0.38	[{'connected_gene': 'GC14P063619', 'score': 0.77}, {'connected_gene': 'GC14P063602', 'score': 0.39}, {'connected_gene': 'WDR89', 'score': 0.31}]
chr14	GH14I063616	63615600	63615800	0.2	[{'connected_gene': 'GC14P063619', 'score': 0.77}, {'connected_gene': 'GC14P063602', 'score': 0.39}, {'connected_gene': 'WDR89', 'score': 0.31}]