PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000529290	[[64833771, 64834151], [64834284, 64834351], [64835126, 64835225], [64835498, 64835590], [64835959, 64836073], [64846824, 64846861]]	[[64833797, 64834151], [64834284, 64834351], [64835126, 64835225], [64835498, 64835590], [64835959, 64836073], [64846824, 64846861]]
ENST00000525464	[[64833836, 64833945], [64834023, 64834151], [64834284, 64834351], [64835126, 64835225], [64835498, 64835590], [64835959, 64836073], [64846824, 64846887]]	[[64833836, 64833945], [64834023, 64834151], [64834284, 64834351], [64835126, 64835225], [64835498, 64835590], [64835959, 64836073], [64846824, 64846887]]
ENST00000438878	[[64834080, 64834151], [64834284, 64834351], [64835126, 64835205]]	[[64834082, 64834151], [64834284, 64834351], [64835126, 64835203]]
ENST00000533015	[[64835515, 64835590], [64835959, 64836073], [64850835, 64850871], [64850956, 64851022], [64851100, 64851372]]	None
ENST00000275517	[[64844923, 64846659], [64846824, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851195], [64851404, 64851623]]	[[64846578, 64846659], [64846824, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851195], [64851404, 64851450]]
ENST00000524733	[[64846104, 64846659], [64846824, 64847021], [64850835, 64850871], [64850956, 64851003]]	[[64846892, 64847021], [64850835, 64850871], [64850956, 64851003]]
ENST00000404147	[[64846559, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851195], [64851404, 64851519]]	[[64846578, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851195], [64851404, 64851450]]
ENST00000479032	[[64846603, 64846659], [64846824, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851511]]	None
ENST00000531401	[[64846612, 64846659], [64846824, 64847259], [64850835, 64851022], [64851100, 64851195], [64851542, 64851636]]	None
ENST00000527430	[[64846637, 64846659], [64846824, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851188], [64851404, 64851449]]	[[64850982, 64851022], [64851100, 64851188], [64851404, 64851449]]
ENST00000462902	[[64850721, 64851022], [64851100, 64851368]]	None
NM_080668	[[64844926, 64846659], [64846824, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851195], [64851404, 64851615]]	[[64846578, 64846659], [64846824, 64847259], [64850835, 64850871], [64850956, 64851022], [64851100, 64851195], [64851404, 64851450]]

Promoter

Chrom	Start	End	Description
chr11	64851367	64851377	CAGE_peak_6_at_CDCA5_5end
chr11	64851378	64851381	CAGE_peak_8_at_CDCA5_5end
chr11	64851496	64851577	CAGE_peak_1_at_CDCA5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I065081	65081429	65081578	0.43	[{'connected_gene': 'SYVN1', 'score': 7.51}, {'connected_gene': 'PIR38481', 'score': 0.77}, {'connected_gene': 'GC11M065079', 'score': 0.77}, {'connected_gene': 'CDCA5', 'score': 0.77}]
chr11	GH11I065082	65082795	65085540	2.06	[{'connected_gene': 'ZFPL1', 'score': 562.82}, {'connected_gene': 'CDCA5', 'score': 550.77}, {'connected_gene': 'SF1', 'score': 22.03}, {'connected_gene': 'PCNX3', 'score': 19.87}, {'connected_gene': 'SNX15', 'score': 16.42}, {'connected_gene': 'POLA2', 'score': 15.81}, {'connected_gene': 'EIF1AD', 'score': 15.27}, {'connected_gene': 'MUS81', 'score': 15.17}, {'connected_gene': 'SART1', 'score': 14.39}, {'connected_gene': 'RELA', 'score': 13.48}, {'connected_gene': 'PLCB3', 'score': 12.32}, {'connected_gene': 'KAT5', 'score': 12.25}, {'connected_gene': 'NAALADL1', 'score': 12.22}, {'connected_gene': 'SCYL1', 'score': 12.11}, {'connected_gene': 'ATG2A', 'score': 11.15}, {'connected_gene': 'FRMD8', 'score': 10.05}, {'connected_gene': 'SF3B2', 'score': 9.69}, {'connected_gene': 'SAC3D1', 'score': 9.39}, {'connected_gene': 'SYVN1', 'score': 7.53}, {'connected_gene': 'TMEM262', 'score': 0.44}]
chr11	GH11I065210	65210517	65211143	0.72	[{'connected_gene': 'LOC728975', 'score': 11.86}, {'connected_gene': 'PGAM1P8', 'score': 11.84}, {'connected_gene': 'CAPN1', 'score': 11.84}, {'connected_gene': 'POLA2', 'score': 11.27}, {'connected_gene': 'ZFPL1', 'score': 11.06}, {'connected_gene': 'CDCA5', 'score': 11.06}, {'connected_gene': 'VPS51', 'score': 11.06}, {'connected_gene': 'SLC22A20P', 'score': 0.77}]
chr11	GH11I065216	65216851	65217736	0.38	[{'connected_gene': 'LOC728975', 'score': 21.63}, {'connected_gene': 'POLA2', 'score': 11.91}, {'connected_gene': 'CAPN1', 'score': 11.74}, {'connected_gene': 'PGAM1P8', 'score': 11.72}, {'connected_gene': 'CDC42EP2', 'score': 11.27}, {'connected_gene': 'SPDYC', 'score': 11.12}, {'connected_gene': 'ZNHIT2', 'score': 10.94}, {'connected_gene': 'ENSG00000255173', 'score': 10.93}, {'connected_gene': 'RNU2-23P', 'score': 10.87}, {'connected_gene': 'HIGD1AP10', 'score': 10.86}, {'connected_gene': 'CDCA5', 'score': 10.7}, {'connected_gene': 'ZFPL1', 'score': 10.7}, {'connected_gene': 'DPF2', 'score': 10.62}, {'connected_gene': 'ENSG00000254501', 'score': 10.58}, {'connected_gene': 'TM7SF2', 'score': 10.58}, {'connected_gene': 'VPS51', 'score': 10.56}, {'connected_gene': 'SLC22A20P', 'score': 0.77}]
chr11	GH11I065211	65211477	65214460	1.03	[{'connected_gene': 'SLC22A20P', 'score': 550.77}, {'connected_gene': 'LOC728975', 'score': 57.11}, {'connected_gene': 'POLA2', 'score': 21.33}, {'connected_gene': 'CAPN1', 'score': 16.35}, {'connected_gene': 'PGAM1P8', 'score': 11.82}, {'connected_gene': 'CDC42EP2', 'score': 11.27}, {'connected_gene': 'SPDYC', 'score': 11.14}, {'connected_gene': 'CDCA5', 'score': 11.06}, {'connected_gene': 'ZFPL1', 'score': 11.06}, {'connected_gene': 'VPS51', 'score': 11.06}, {'connected_gene': 'HIGD1AP10', 'score': 11.01}, {'connected_gene': 'RNU2-23P', 'score': 11.01}, {'connected_gene': 'ENSG00000255173', 'score': 10.94}, {'connected_gene': 'ZNHIT2', 'score': 10.94}, {'connected_gene': 'ENSG00000254501', 'score': 10.67}, {'connected_gene': 'TM7SF2', 'score': 10.67}, {'connected_gene': 'DPF2', 'score': 10.62}]
chr11	GH11I065215	65215401	65215679	1.06	[{'connected_gene': 'SLC22A20P', 'score': 550.77}, {'connected_gene': 'POLA2', 'score': 11.89}, {'connected_gene': 'LOC728975', 'score': 11.76}, {'connected_gene': 'CAPN1', 'score': 11.76}, {'connected_gene': 'PGAM1P8', 'score': 11.74}, {'connected_gene': 'CDC42EP2', 'score': 11.27}, {'connected_gene': 'SPDYC', 'score': 11.12}, {'connected_gene': 'ENSG00000255173', 'score': 10.94}, {'connected_gene': 'ZNHIT2', 'score': 10.94}, {'connected_gene': 'HIGD1AP10', 'score': 10.87}, {'connected_gene': 'RNU2-23P', 'score': 10.87}, {'connected_gene': 'CDCA5', 'score': 10.7}, {'connected_gene': 'ZFPL1', 'score': 10.7}, {'connected_gene': 'DPF2', 'score': 10.62}, {'connected_gene': 'ENSG00000254501', 'score': 10.58}, {'connected_gene': 'TM7SF2', 'score': 10.58}, {'connected_gene': 'VPS51', 'score': 10.56}]
chr11	GH11I065065	65065979	65068270	0.87	[{'connected_gene': 'SNX15', 'score': 28.3}, {'connected_gene': 'ARL2', 'score': 11.84}, {'connected_gene': 'VPS51', 'score': 11.57}, {'connected_gene': 'ENSG00000254501', 'score': 11.49}, {'connected_gene': 'TM7SF2', 'score': 11.49}, {'connected_gene': 'CDC42BPG', 'score': 10.68}, {'connected_gene': 'MAJIN', 'score': 10.25}, {'connected_gene': 'EHD1', 'score': 9.55}, {'connected_gene': 'MEN1', 'score': 4.79}, {'connected_gene': 'LOC728975', 'score': 4.57}, {'connected_gene': 'GC11M065053', 'score': 0.44}, {'connected_gene': 'PIR38481', 'score': 0.39}, {'connected_gene': 'GC11M065079', 'score': 0.39}, {'connected_gene': 'CDCA5', 'score': 0.37}]
chr11	GH11I065069	65069181	65069952	0.74	[{'connected_gene': 'SNX15', 'score': 21.73}, {'connected_gene': 'ARL2', 'score': 11.83}, {'connected_gene': 'ENSG00000254501', 'score': 11.49}, {'connected_gene': 'TM7SF2', 'score': 11.49}, {'connected_gene': 'CDC42BPG', 'score': 10.68}, {'connected_gene': 'MAJIN', 'score': 10.25}, {'connected_gene': 'EHD1', 'score': 9.55}, {'connected_gene': 'PIR38481', 'score': 0.44}, {'connected_gene': 'GC11M065079', 'score': 0.44}, {'connected_gene': 'GC11M065053', 'score': 0.44}, {'connected_gene': 'CDCA5', 'score': 0.39}]
chr11	GH11I065047	65047298	65048393	0.7	[{'connected_gene': 'SNX15', 'score': 20.12}, {'connected_gene': 'CDCA5', 'score': 12.65}, {'connected_gene': 'ZFPL1', 'score': 12.65}, {'connected_gene': 'VPS51', 'score': 11.79}, {'connected_gene': 'ENSG00000254501', 'score': 10.99}, {'connected_gene': 'TM7SF2', 'score': 10.99}, {'connected_gene': 'MAJIN', 'score': 10.79}, {'connected_gene': 'GC11P065048', 'score': 0.77}, {'connected_gene': 'GC11P065050', 'score': 0.77}, {'connected_gene': 'GC11M065049', 'score': 0.77}, {'connected_gene': 'NAALADL1', 'score': 0.39}]
chr11	GH11I065219	65219679	65220449	0.59	[{'connected_gene': 'POLA2', 'score': 11.91}, {'connected_gene': 'LOC728975', 'score': 11.74}, {'connected_gene': 'CAPN1', 'score': 11.74}, {'connected_gene': 'PGAM1P8', 'score': 11.72}, {'connected_gene': 'CDC42EP2', 'score': 11.28}, {'connected_gene': 'SPDYC', 'score': 11.11}, {'connected_gene': 'ENSG00000255173', 'score': 10.93}, {'connected_gene': 'ZNHIT2', 'score': 10.93}, {'connected_gene': 'HIGD1AP10', 'score': 10.86}, {'connected_gene': 'RNU2-23P', 'score': 10.86}, {'connected_gene': 'CDCA5', 'score': 10.7}, {'connected_gene': 'ZFPL1', 'score': 10.7}, {'connected_gene': 'DPF2', 'score': 10.63}, {'connected_gene': 'ENSG00000254501', 'score': 10.58}, {'connected_gene': 'TM7SF2', 'score': 10.58}, {'connected_gene': 'VPS51', 'score': 10.55}, {'connected_gene': 'SLC22A20P', 'score': 8.41}]
chr11	GH11I065077	65077769	65079349	0.73	[{'connected_gene': 'PIR38481', 'score': 550.77}, {'connected_gene': 'GC11M065079', 'score': 550.77}, {'connected_gene': 'SNX15', 'score': 16.65}, {'connected_gene': 'LOC728975', 'score': 4.58}, {'connected_gene': 'SLC22A20P', 'score': 4.48}, {'connected_gene': 'CDCA5', 'score': 0.44}]