PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
GABARAPL2	0	HACD3	2	affinity chromatography technology	Behrends C (2010)	1
YWHAZ	1	APP	1	pull down	Olah J (2011)	1
GABARAP	0	WDFY3	17	affinity chromatography technology, pull down, pull down, x-ray crystallography, imaging technique	Lystad AH (2014), Lystad AH (2014), Lystad AH (2014), Lystad AH (2014), Lystad AH (2014)	5
MAP1LC3B	1	ATG3	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2004), Gao W (2013)	3
MAP1LC3B	1	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
CUL3	17	KLHL5	0	affinity chromatography technology, two hybrid	Bennett EJ (2010), Wang J (2011)	2
MAP1LC3B	1	TBC1D25	3	two hybrid, pull down	Itoh T (2011), Itoh T (2011)	2
GABARAPL2	0	PTPRA	3	two hybrid	Vinayagam A (2011)	1
CUL3	17	YWHAZ	1	affinity chromatography technology	Bennett EJ (2010)	1
GABARAPL2	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
EGFR	5	PTPRA	3	two hybrid, affinity chromatography technology	Yao Z (2017), Yao Z (2017)	2
SQSTM1	0	HADHA	3	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
MAP1LC3B	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
NBR1	0	MAP1LC3C	0	affinity chromatography technology	Kirkin V (2009)	1
MLX	0	GABARAPL2	0	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
EGFR	5	RCN2	0	affinity chromatography technology	Foerster S (2013)	1
GABARAPL2	0	FUNDC1	0	two hybrid	Rolland T (2014)	1
GABARAPL1	0	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	TBC1D5	0	affinity chromatography technology, pull down, two hybrid	Popovic D (2012), Popovic D (2012), Rolland T (2014)	3
VDAC1	2	RCN2	0	affinity chromatography technology	Malty RH (2017)	1
SGTA	1	CCDC155	2	two hybrid	Rolland T (2014)	1
GABARAPL2	0	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
VDAC1	2	YWHAZ	1	affinity chromatography technology	Malty RH (2017)	1
GABARAP	0	ATG13	0	affinity chromatography technology, unspecified method, two hybrid	Alemu EA (2012), Alemu EA (2012), Fujita N (2013)	3
GABARAPL2	0	KIAA1958	5	two hybrid	Rolland T (2014)	1
GABARAPL2	0	CUL3	17	affinity chromatography technology, pull down	Behrends C (2010), Genau HM (2015)	2
GIMAP6	0	APP	1	pull down	Olah J (2011)	1
GABARAPL2	0	TBC1D9B	4	two hybrid, two hybrid	Popovic D (2012), Rolland T (2014)	2
TBC1D25	3	GABARAP	0	two hybrid, two hybrid, pull down, pull down, affinity chromatography technology	Itoh T (2011), Itoh T (2011), Itoh T (2011), Hirano S (2016), Huttlin EL (2017)	5
GABARAPL2	0	ATG3	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down	Ewing RM (2007), Behrends C (2010), Behrends C (2010), Sou YS (2006), Sou YS (2006)	5
EGFR	5	HADHB	4	affinity chromatography technology	Tong J (2014)	1
BCL2L13	1	APP	1	pull down	Olah J (2011)	1
GABARAPL1	0	KRTAP10-7	0	two hybrid	Rolland T (2014)	1
ELAVL1	0	PRKCI	1	affinity chromatography technology	Abdelmohsen K (2009)	1
SQSTM1	0	NIPSNAP2	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
GABARAPL1	0	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	AGTRAP	1	two hybrid	Rolland T (2014)	1
GABARAPL1	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
GABARAP	0	NIPSNAP2	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Dunlop EA (2014)	2
GABARAPL2	0	LRPPRC	7	affinity chromatography technology	Ewing RM (2007)	1
CUL3	17	RCN2	0	affinity chromatography technology	Bennett EJ (2010)	1
EGFR	5	EZR	8	protein complementation assay	Petschnigg J (2014)	1
NEDD4	2	CALCOCO1	2	enzymatic study	Persaud A (2009)	1
GABARAPL1	0	NEDD4	2	affinity chromatography technology	Behrends C (2010)	1
PRKCI	1	SQSTM1	0	two hybrid, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology, fluorescent resonance energy transfe	Sanchez P (1998), Sanchez P (1998), Sanchez P (1998), Sanchez P (1998), Behrends C (2010), Brajenovic M (2004), Lamark T (2003), Lamark T (2003), Lamark T (2003), Yang JQ (2010), Yang JQ (2010), Erdogan E (2006), Milan E (2015), Tsai LC (2015), Tsai LC (2015), Tsai LC (2015)	16
GABARAPL1	0	AHNAK2	36	two hybrid	Rolland T (2014)	1
GABARAPL2	0	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
MEFV	3	GABARAP	0	pull down, unspecified method, pull down	Kimura T (2015), Kimura T (2015), Kimura T (2015)	3
GABARAPL2	0	KRTAP10-9	1	two hybrid	Rolland T (2014)	1
VDR	2	GABARAPL1	0	two hybrid	Albers M (2005)	1
GABARAPL2	0	CALCOCO1	2	two hybrid	Rolland T (2014)	1
OPTN	1	GABARAP	0	pull down	Wild P (2011)	1
SQSTM1	0	RCN2	0	affinity chromatography technology	Milan E (2015)	1
MAP1LC3B	1	ATG7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2004), Gao W (2013)	3
CUL3	17	RPS2	3	affinity chromatography technology	Bennett EJ (2010)	1
GABARAPL1	0	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
KBTBD7	3	PRKCI	1	affinity chromatography technology	Huttlin EL (2017)	1
MAP1LC3B	1	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
SQSTM1	0	TAX1BP1	3	affinity chromatography technology	Mildenberger J (2017)	1
SQSTM1	0	NBR1	0	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down	DAgostino C (2011), Lange S (2005), Lamark T (2003), Lamark T (2003), Yang JQ (2010), Erdogan E (2006), Yamashita SI (2014), Nicot AS (2014)	8
VDAC1	2	HADHB	4	affinity chromatography technology	Malty RH (2017)	1
CALCOCO2	0	SQSTM1	0	affinity chromatography technology	Cemma M (2011)	1
ATG3	4	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
ATG4D	2	GABARAPL1	0	enzymatic study, enzymatic study	Betin VM (2009), Betin VM (2009)	2
TNIP1	1	GABARAPL1	0	two hybrid	Rolland T (2014)	1
KBTBD7	3	TMEM160	0	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Huttlin EL (2017)	2
GABARAPL1	0	STBD1	1	affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Jiang S (2011), Jiang S (2011), Huttlin EL (2015), Huttlin EL (2017)	5
WWOX	3	HADHA	3	affinity chromatography technology	Abu-Odeh M (2014)	1
CUL3	17	KBTBD6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Olma MH (2009), Genau HM (2015), Genau HM (2015), Huttlin EL (2017)	5
MAP1LC3B	1	SQSTM1	0	two hybrid, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, two hybrid, imaging technique, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Kirkin V (2009), Kirkin V (2009), Liang X (2013), Liang X (2013), Novak I (2010), Novak I (2010), Rogov VV (2012), Gao W (2013), Maruyama Y (2014), Maruyama Y (2014), Maruyama Y (2014), Yamashita SI (2014), Wurzer B (2015), Wurzer B (2015), Wurzer B (2015), Sun A (2017), Cohen-Kaplan V (2016), Dou Z (2015), Galindo-Moreno M (2017)	22
MAP1LC3C	0	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
OSBPL7	4	GABARAPL2	0	protein complementation assay, two hybrid	Zhong W (2011), Zhong W (2011)	2
TBC1D5	0	GABARAPL2	0	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
GABARAPL1	0	IPO5	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	CCDC155	2	two hybrid	Rolland T (2014)	1
MEFV	3	ULK1	8	affinity chromatography technology, pull down	Kimura T (2015), Kimura T (2015)	2
GABARAPL2	0	SIK2	2	two hybrid	Rolland T (2014)	1
EGFR	5	YWHAZ	1	affinity chromatography technology, affinity chromatography technology, two hybrid, protein complementation assay, affinity chromatography technology	Tong J (2009), Foerster S (2013), Kotlyar M (2015), Petschnigg J (2014), Petschnigg J (2014)	5
GABARAPL2	0	IPO5	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	UBA5	0	two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Behrends C (2010), Behrends C (2010), Vinayagam A (2011), Rolland T (2014), Huttlin EL (2017)	6
SIK2	2	APP	1	pull down	Olah J (2011)	1
CUL3	17	HACD3	2	affinity chromatography technology	Bennett EJ (2010)	1
GABARAPL2	0	KBTBD7	3	two hybrid, affinity chromatography technology, pull down	Vinayagam A (2011), Genau HM (2015), Genau HM (2015)	3
GABARAP	0	TRIM21	0	pull down	Kimura T (2015)	1
GABARAP	0	TAX1BP1	3	pull down	Newman AC (2012)	1
KEAP1	0	TMEM160	0	affinity chromatography technology	Sowa ME (2009)	1
KBTBD7	3	KBTBD6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Genau HM (2015), Genau HM (2015), Hein MY (2015), Huttlin EL (2017)	5
TP53INP1	0	GABARAP	0	two hybrid, affinity chromatography technology, fluorescent resonance energy transfe	Seillier M (2012), Seillier M (2012), Seillier M (2012)	3
OPTN	1	YWHAZ	1	affinity chromatography technology	Li S (2011)	1
TNIP1	1	MAP1LC3B	1	two hybrid	Rolland T (2014)	1
TP53INP1	0	GABARAPL2	0	two hybrid, affinity chromatography technology, fluorescent resonance energy transfe	Seillier M (2012), Seillier M (2012), Seillier M (2012)	3
MAP1LC3B	1	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
CUL3	17	EIF4G1	9	affinity chromatography technology	Bennett EJ (2010)	1
ULK1	8	GABARAPL2	0	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, unspecified method	Okazaki N (2000), Okazaki N (2000), Behrends C (2010), Alemu EA (2012), Alemu EA (2012)	5
MEFV	3	GABARAPL1	0	pull down	Kimura T (2015)	1
GABARAPL1	0	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	GABARAPL2	0	pull down	Maruyama Y (2014)	1
KEAP1	0	CUL3	17	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang XJ (2008), Rachakonda G (2008), Rachakonda G (2008), Nioi P (2007), Chew EH (2007), Chew EH (2007), Zhang DD (2005), Furukawa M (2005), Furukawa M (2005), Furukawa M (2005), Zhang DD (2004), Cullinan SB (2004), Kobayashi A (2004), Kobayashi A (2004), McMahon M (2006), Ichikawa T (2009), Lee DF (2009), Wong DP (2010), Wong DP (2010), Lau A (2010), Lau A (2010), Hur W (2010), Bennett EJ (2010), Yao JW (2012), Li Y (2012), Choo YY (2012), Kansanen E (2011), Kansanen E (2011), Niture SK (2013), Hast BE (2014), Cleasby A (2014), Kaspar JW (2012), Kaspar JW (2012), Su C (2015), Su C (2015), Huo L (2015), Dubiel D (2015), Lo SC (2006), Wu G (2017), Villeneuve NF (2013), Villeneuve NF (2013), Villeneuve NF (2013), Dong T (2016)	43
ATG4D	2	GABARAPL2	0	enzymatic study	Betin VM (2009)	1
GABARAPL2	0	KLHL5	0	two hybrid	Vinayagam A (2011)	1
GABARAP	0	STBD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Huttlin EL (2015), Huttlin EL (2017)	3
GABARAPL1	0	KRTAP10-9	1	two hybrid	Rolland T (2014)	1
MAP1LC3C	0	ATG3	4	affinity chromatography technology	Behrends C (2010)	1
TTBK1	6	GABARAPL2	0	affinity chromatography technology	Ewing RM (2007)	1
CLN8	0	BNIP3L	1	two hybrid	Passantino R (2013)	1
MAP1LC3B	1	TBC1D9B	4	two hybrid	Popovic D (2012)	1
GABARAPL2	0	AHNAK2	36	two hybrid	Rolland T (2014)	1
ATG7	2	GABARAP	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Tanida I (2001), Sou YS (2006), Sou YS (2006), Dunlop EA (2014)	6
CALCOCO2	0	GABARAPL2	0	two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Rolland T (2014), Verlhac P (2015)	3
EGFR	5	VAPA	1	protein complementation assay, affinity chromatography technology	Deribe YL (2009), Foerster S (2013)	2
GABARAPL1	0	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
OPTN	1	MAP1LC3C	0	two hybrid	Tumbarello DA (2015)	1
MAP1LC3B	1	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
ELAVL1	0	GABARAPL2	0	affinity chromatography technology	Abdelmohsen K (2009)	1
ATG3	4	ATG7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Tanida I (2002), Tanida I (2002), Behrends C (2010), Behrends C (2010), Qiu Y (2013), Huttlin EL (2017)	6
MAP1LC3B	1	CUL3	17	pull down	Genau HM (2015)	1
MAP1LC3B	1	ATG4A	1	two hybrid	Novak I (2010)	1
TNIP1	1	GABARAPL2	0	two hybrid	Rolland T (2014)	1
GABARAPL2	0	TSR2	1	two hybrid	Rolland T (2014)	1
GABARAPL2	0	WDR62	6	affinity chromatography technology	Behrends C (2010)	1
GABARAP	0	ULK2	0	unspecified method	Alemu EA (2012)	1
MAP1LC3B	1	ATG4B	1	two hybrid, affinity chromatography technology, two hybrid, two hybrid, enzymatic study, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Novak I (2010), Tanida I (2004), Gao W (2013)	6
GABARAP	0	IPO5	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	ATG3	4	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2006)	2
GABARAPL1	0	TBC1D9B	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3C	0	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	NBR1	0	affinity chromatography technology, two hybrid, affinity chromatography technology	Behrends C (2010), Kirkin V (2009), Kirkin V (2009)	3
GABARAPL2	0	AAMP	3	two hybrid	Vinayagam A (2011)	1
GABARAP	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	TRIM21	0	pull down	Kimura T (2015)	1
CUL3	17	NIPSNAP2	1	affinity chromatography technology	Bennett EJ (2010)	1
GABARAPL2	0	GIMAP6	0	two hybrid	Rolland T (2014)	1
GABARAPL2	0	RCN2	0	affinity chromatography technology, two hybrid	Behrends C (2010), Vinayagam A (2011)	2
SIK2	2	YWHAZ	1	affinity chromatography technology	Yang FC (2013)	1
TRIM21	0	ULK1	8	affinity chromatography technology	Kimura T (2015)	1
KRTAP10-7	0	KRTAP10-9	1	two hybrid	Rolland T (2014)	1
GABARAPL1	0	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	NEK9	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	EIF4G1	9	affinity chromatography technology	Ewing RM (2007)	1
ELAVL1	0	RAP1A	1	affinity chromatography technology	Abdelmohsen K (2009)	1
GABARAPL2	0	HBG1	1	affinity chromatography technology	Ewing RM (2007)	1
MAP1LC3C	0	KBTBD7	3	pull down	Genau HM (2015)	1
CLN8	0	GABARAPL2	0	two hybrid	Passantino R (2013)	1
SQSTM1	0	MAP1LC3C	0	affinity chromatography technology	Kirkin V (2009)	1
GABARAPL2	0	NEDD4	2	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	VDAC1	2	affinity chromatography technology	Ewing RM (2007)	1
SQSTM1	0	ULK1	8	affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology	Ro SH (2014), Ro SH (2014), Lim J (2015), Lim J (2015)	4
GABARAP	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology	Behrends C (2010), Kirkin V (2009), Maruyama Y (2014), Dunlop EA (2014), Wurzer B (2015), Wurzer B (2015)	6
SQSTM1	0	GABARAPL2	0	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid	Rual JF (2005), Behrends C (2010), Vinayagam A (2011), Shvets E (2011), Kirkin V (2009), Kirkin V (2009), Maruyama Y (2014), Rolland T (2014), Yu H (2011)	9
PRKCI	1	APP	1	pull down	Olah J (2011)	1
SQSTM1	0	HADHB	4	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
NIPSNAP2	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
PRKCI	1	NIPSNAP1	3	affinity chromatography technology	Brajenovic M (2004)	1
HBG1	1	KRTAP10-9	1	two hybrid	Rolland T (2014)	1
KEAP1	0	EGFR	5	affinity chromatography technology, affinity chromatography technology, enzymatic study	Huo L (2015), Huo L (2015), Huo L (2015)	3
MAP1LC3B	1	TBC1D5	0	affinity chromatography technology	Popovic D (2012)	1
SQSTM1	0	YWHAZ	1	pull down	Pridgeon JW (2004)	1
YWHAZ	1	PTPRA	3	affinity chromatography technology	Hein MY (2015)	1
TNIP1	1	TAX1BP1	3	affinity chromatography technology, affinity chromatography technology, two hybrid	Gao L (2011), Gao L (2011), Rolland T (2014)	3
CUL3	17	APP	1	pull down, pull down	Olah J (2011), Virok DP (2011)	2
GABARAP	0	NBR1	0	affinity chromatography technology, affinity chromatography technology, pull down	Behrends C (2010), Kirkin V (2009), Nicot AS (2014)	3
MAP1LC3C	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
CLN8	0	VAPA	1	two hybrid, affinity chromatography technology, affinity chromatography technology	Passantino R (2013), Passantino R (2013), Passantino R (2013)	3
GABARAPL2	0	RPS2	3	two hybrid	Vinayagam A (2011)	1
VDAC1	2	HADHA	3	affinity chromatography technology	Malty RH (2017)	1
KBTBD6	0	GABARAPL2	0	affinity chromatography technology, pull down	Genau HM (2015), Genau HM (2015)	2
YWHAZ	1	WDR62	6	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3B	1	NEDD4	2	affinity chromatography technology, pull down, pull down, x-ray crystallography	Sun A (2017), Sun A (2017), Qiu Y (2017), Qiu Y (2017)	4
KEAP1	0	SQSTM1	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Sowa ME (2009), Jain A (2010), Jain A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Inami Y (2011), Fan W (2010), Copple IM (2010), Copple IM (2010), Wright T (2013), Tanji K (2013), Ichimura Y (2013), Ichimura Y (2013), Ichimura Y (2013), Hast BE (2014), Hast BE (2014), Lerner C (2013), Rolland T (2014), Gjyshi O (2015), Bakkar N (2015), Milan E (2015), Park S (2016), Ge W (2017), Mildenberger J (2017), Lu K (2017), Lee Y (2017)	30
ATG7	2	MAP1LC3C	0	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010)	2
ELAVL1	0	EZR	8	affinity chromatography technology	Abdelmohsen K (2009)	1
ULK1	8	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	YWHAZ	1	two hybrid	Vinayagam A (2011)	1
MAP1LC3B	1	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
EGFR	5	GABARAPL2	0	protein complementation assay	Deribe YL (2009)	1
MAP1LC3B	1	CALCOCO2	0	affinity chromatography technology	Verlhac P (2015)	1
PRKCI	1	NIPSNAP2	1	affinity chromatography technology	Brajenovic M (2004)	1
VAPA	1	APP	1	pull down	Olah J (2011)	1
ELAVL1	0	RAP2A	0	affinity chromatography technology	Abdelmohsen K (2009)	1
SQSTM1	0	ATG4B	1	affinity chromatography technology	Tanji K (2012)	1
MAP1LC3B	1	FUNDC1	0	two hybrid	Rolland T (2014)	1
MLX	0	APP	1	pull down	Olah J (2011)	1
TBC1D25	3	GABARAPL2	0	two hybrid, two hybrid, pull down, pull down, affinity chromatography technology	Itoh T (2011), Itoh T (2011), Itoh T (2011), Hirano S (2016), Huttlin EL (2017)	5
GABARAPL1	0	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
YWHAZ	1	PRKCI	1	pull down, affinity chromatography technology	Zemlickova E (2003), Brajenovic M (2004)	2
GABARAPL1	0	CUL3	17	affinity chromatography technology, pull down	Behrends C (2010), Genau HM (2015)	2
EGFR	5	APP	1	two hybrid, protein complementation assay	Kotlyar M (2015), Petschnigg J (2014)	2
OPTN	1	TNIP1	1	two hybrid, two hybrid, two hybrid, affinity chromatography technology	Wang J (2011), Rolland T (2014), Yu H (2011), Huttlin EL (2017)	4
GABARAPL2	0	TBC1D9	3	two hybrid	Popovic D (2012)	1
GABARAPL2	0	WDFY3	17	affinity chromatography technology, pull down	Lystad AH (2014), Lystad AH (2014)	2
GABARAPL1	0	FUNDC1	0	two hybrid	Rolland T (2014)	1
NIPSNAP2	1	NIPSNAP1	3	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Hein MY (2015)	2
GABARAPL1	0	OPTN	1	two hybrid, affinity chromatography technology, pull down	Wild P (2011), Wild P (2011), Wild P (2011)	3
GABARAPL2	0	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
SQSTM1	0	CUL3	17	imaging technique, affinity chromatography technology	Lau A (2010), Mori Y (2015)	2
KEAP1	0	NIPSNAP2	1	affinity chromatography technology	Sowa ME (2009)	1
GABARAPL1	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
ARFGAP1	3	APP	1	pull down	Olah J (2011)	1
TP53INP1	0	SQSTM1	0	fluorescent resonance energy transfe	Seillier M (2012)	1
ARFGAP1	3	KRTAP10-9	1	two hybrid	Rolland T (2014)	1
MAP1LC3B	1	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
ATG13	0	APP	1	pull down	Olah J (2011)	1
ULK1	8	ULK2	0	genetic interference	Goodwin JM (2017)	1
HADHA	3	HADHB	4	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
NEDD4	2	RAP2A	0	pull down, pull down, affinity chromatography technology	Kawabe H (2010), Wang L (2017), Wang L (2017)	3
ULK1	8	ATG13	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2011), Nazio F (2013), Nazio F (2013), Hosokawa N (2009), Li J (2015), Dunlop EA (2014), Rui YN (2015)	7
MAP1LC3C	0	TAX1BP1	3	pull down, two hybrid	Newman AC (2012), Tumbarello DA (2015)	2
GABARAPL2	0	RAP1A	1	enzymatic study	Kuiperij HB (2003)	1
GABARAP	0	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3C	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
WWOX	3	GABARAPL2	0	affinity chromatography technology	Abu-Odeh M (2014)	1
ATG3	4	GABARAP	0	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Sou YS (2006), Sou YS (2006), Huttlin EL (2017)	5
MAP1LC3B	1	AAMP	3	two hybrid	Vinayagam A (2011)	1
CALCOCO1	2	APP	1	pull down	Olah J (2011)	1
MAP1LC3C	0	CUL3	17	pull down	Genau HM (2015)	1
GABARAPL2	0	TRIM21	0	pull down	Kimura T (2015)	1
GABARAPL1	0	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
GABARAP	0	NIPSNAP1	3	affinity chromatography technology	Dunlop EA (2014)	1
OPTN	1	GABARAPL2	0	pull down	Wild P (2011)	1
STBD1	1	CCDC155	2	two hybrid	Rolland T (2014)	1
GABARAPL2	0	VAPA	1	affinity chromatography technology	Passantino R (2013)	1
ATG7	2	APP	1	pull down	Olah J (2011)	1
GABARAPL2	0	APP	1	pull down	Olah J (2011)	1
MAP1LC3C	0	CALCOCO2	0	affinity chromatography technology, pull down, x-ray crystallography, two hybrid, affinity chromatography technology	von Muhlinen N (2012), von Muhlinen N (2012), von Muhlinen N (2012), Tumbarello DA (2015), Verlhac P (2015)	5
TBC1D9	3	TBC1D9B	4	affinity chromatography technology	Huttlin EL (2017)	1
MAP1LC3C	0	WDFY3	17	affinity chromatography technology, pull down	Lystad AH (2014), Lystad AH (2014)	2
GABARAPL2	0	NEK9	1	affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Behrends C (2010)	2
TAX1BP1	3	OPTN	1	affinity chromatography technology, affinity chromatography technology	Journo C (2009), Journo C (2009)	2
GABARAP	0	CUL3	17	pull down	Genau HM (2015)	1
VDAC1	2	ELAVL1	0	affinity chromatography technology	Malty RH (2017)	1
GABARAPL1	0	KBTBD6	0	affinity chromatography technology, affinity chromatography technology, pull down, unspecified method, x-ray crystallography	Behrends C (2010), Genau HM (2015), Genau HM (2015), Genau HM (2015), Genau HM (2015)	5
KBTBD6	0	MAP1LC3B	1	affinity chromatography technology, pull down, unspecified method, x-ray crystallography	Genau HM (2015), Genau HM (2015), Genau HM (2015), Genau HM (2015)	4
GABARAPL1	0	KBTBD7	3	affinity chromatography technology, two hybrid, affinity chromatography technology, pull down, unspecified method	Behrends C (2010), Rolland T (2014), Genau HM (2015), Genau HM (2015), Genau HM (2015)	5
ULK1	8	GABARAP	0	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology	Ewing RM (2007), Okazaki N (2000), Okazaki N (2000), Alemu EA (2012), Alemu EA (2012), Dunlop EA (2014)	6
MAP1LC3C	0	TRIM21	0	pull down	Kimura T (2015)	1
VAPA	1	VDAC1	2	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015)	3
GABARAPL2	0	IRGQ	0	affinity chromatography technology	Ewing RM (2007)	1
EGFR	5	KBTBD7	3	affinity chromatography technology	Yao Z (2017)	1
GABARAPL2	0	ARFGAP1	3	two hybrid	Rolland T (2014)	1
VDR	2	GABARAPL2	0	two hybrid	Albers M (2005)	1
KRTAP10-7	0	APP	1	pull down	Olah J (2011)	1
APP	1	KEAP1	0	affinity chromatography technology	Huttlin EL (2017)	1
MEFV	3	MAP1LC3C	0	pull down	Kimura T (2015)	1
OPTN	1	SQSTM1	0	affinity chromatography technology, pull down	Liu Z (2014), Liu Z (2014)	2
GABARAPL1	0	TRIM21	0	pull down	Kimura T (2015)	1
GABARAPL2	0	ULK2	0	unspecified method	Alemu EA (2012)	1
MAP1LC3B	1	KLHL5	0	two hybrid	Vinayagam A (2011)	1
GABARAPL2	0	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
CALCOCO2	0	GABARAPL1	0	two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Rolland T (2014), Verlhac P (2015)	3
TAX1BP1	3	GABARAPL1	0	two hybrid	Tumbarello DA (2015)	1
MAP1LC3B	1	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
GABARAPL2	0	RAP2A	0	enzymatic study	Kuiperij HB (2003)	1
TP53INP2	1	GABARAPL2	0	affinity chromatography technology, two hybrid	Mauvezin C (2010), Mauvezin C (2010)	2
CUL3	17	ELAVL1	0	affinity chromatography technology	Bennett EJ (2010)	1
HBG1	1	APP	1	pull down	Olah J (2011)	1
GABARAPL1	0	WDFY3	17	affinity chromatography technology, pull down	Lystad AH (2014), Lystad AH (2014)	2
MAP1LC3B	1	ARFGAP1	3	two hybrid	Vinayagam A (2011)	1
ATG4B	1	GABARAPL1	0	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study	Behrends C (2010), Behrends C (2010), Tanida I (2006), Betin VM (2009), Betin VM (2009)	5
GABARAPL2	0	EZR	8	affinity chromatography technology	Ewing RM (2007)	1
MAP1LC3B	1	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
EZR	8	IPO5	0	biochemical	Kristensen AR (2012)	1
EGFR	5	LRPPRC	7	affinity chromatography technology	Tong J (2014)	1
YWHAZ	1	TRIM21	0	affinity chromatography technology	Jin J (2004)	1
EGFR	5	KRTAP10-9	1	affinity chromatography technology	Yao Z (2017)	1
ATG7	2	GABARAPL2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down	Behrends C (2010), Behrends C (2010), Tanida I (2001), Sou YS (2006), Sou YS (2006)	5
MAP1LC3B	1	KBTBD7	3	two hybrid, two hybrid, affinity chromatography technology, pull down, unspecified method	Stelzl U (2005), Vinayagam A (2011), Genau HM (2015), Genau HM (2015), Genau HM (2015)	5
GABARAP	0	NEDD4	2	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3C	0	KBTBD6	0	pull down	Genau HM (2015)	1
MAP1LC3B	1	TBC1D9	3	two hybrid	Popovic D (2012)	1
WWOX	3	ELAVL1	0	affinity chromatography technology	Abu-Odeh M (2014)	1
GABARAPL1	0	ATG4A	1	two hybrid	Rolland T (2014)	1
TAX1BP1	3	GABARAPL2	0	two hybrid	Tumbarello DA (2015)	1
EGFR	5	IPO5	0	affinity chromatography technology	Foerster S (2013)	1
TBC1D9B	4	APP	1	pull down	Olah J (2011)	1
SQSTM1	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
ATG7	2	GABARAPL1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Tanida I (2006)	3
GABARAPL2	0	KRTAP10-7	0	two hybrid	Rolland T (2014)	1
ATG4A	1	GABARAPL2	0	enzymatic study	Scherz-Shouval R (2003)	1
EGFR	5	AAMP	3	affinity chromatography technology	Tong J (2014)	1
GABARAPL2	0	BCL2L13	1	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
KBTBD6	0	GABARAP	0	affinity chromatography technology, pull down, x-ray crystallography	Genau HM (2015), Genau HM (2015), Genau HM (2015)	3
GABARAPL2	0	SGTA	1	two hybrid	Wang J (2011)	1
GABARAP	0	ATG4B	1	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Behrends C (2010), Dunlop EA (2014)	4
ELAVL1	0	TP53INP1	0	affinity chromatography technology	Abdelmohsen K (2009)	1
GABARAPL1	0	TBC1D9	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
KBTBD7	3	CUL3	17	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Bennett EJ (2010), Genau HM (2015), Genau HM (2015), Huttlin EL (2017)	5
CALCOCO2	0	TAX1BP1	3	affinity chromatography technology, two hybrid	Morriswood B (2007), Morriswood B (2007)	2
GABARAPL2	0	STBD1	1	affinity chromatography technology	Behrends C (2010)	1
SQSTM1	0	WDFY3	17	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hocking LJ (2010), Clausen TH (2010), Clausen TH (2010), Isakson P (2013)	4
GABARAPL2	0	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	ATG4B	1	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, enzymatic study	Ewing RM (2007), Stelzl U (2005), Behrends C (2010), Behrends C (2010), Vinayagam A (2011), Betin VM (2009)	6
GABARAP	0	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
MAP1LC3B	1	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
NBR1	0	MAP1LC3B	1	affinity chromatography technology, pull down	Kirkin V (2009), Nicot AS (2014)	2
MAP1LC3B	1	OPTN	1	imaging technique, unspecified method, pull down, x-ray crystallography, affinity chromatography technology, pull down	Wild P (2011), Wild P (2011), Rogov VV (2013), Rogov VV (2013), Rogov VV (2013), Wild P (2011)	6
GABARAP	0	CALCOCO2	0	affinity chromatography technology	Verlhac P (2015)	1
SQSTM1	0	ATG7	2	affinity chromatography technology	Tanji K (2012)	1
SQSTM1	0	TRIM21	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology	Kim JY (2009), Kim JY (2009), Kimura T (2015), Milan E (2015), Pan JA (2016), Pan JA (2016)	6
NEDD4	2	EGFR	5	enzymatic study, pull down	Persaud A (2009), Persaud A (2009)	2
WWOX	3	YWHAZ	1	affinity chromatography technology	Abu-Odeh M (2014)	1
SQSTM1	0	ULK2	0	pull down	Pridgeon JW (2004)	1
GABARAPL2	0	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
SQSTM1	0	GABARAPL1	0	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, imaging technique, two hybrid	Rual JF (2005), Behrends C (2010), Wild P (2011), Kirkin V (2009), Zhang Y (2011), Zhang Y (2011), Rolland T (2014)	7
GABARAPL1	0	TBC1D25	3	affinity chromatography technology, pull down, affinity chromatography technology	Popovic D (2012), Popovic D (2012), Huttlin EL (2017)	3
KBTBD7	3	GABARAP	0	affinity chromatography technology, pull down	Genau HM (2015), Genau HM (2015)	2
MCPH1	4	GABARAPL2	0	two hybrid	Liu X (2017)	1
NBR1	0	GABARAPL1	0	affinity chromatography technology	Kirkin V (2009)	1
MEFV	3	GABARAPL2	0	pull down	Kimura T (2015)	1
MAP1LC3B	1	TAX1BP1	3	pull down, two hybrid	Newman AC (2012), Tumbarello DA (2015)	2
MAP1LC3B	1	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
CUL3	17	IPO5	0	affinity chromatography technology	Bennett EJ (2010)	1
GABARAPL2	0	ATG13	0	two hybrid, affinity chromatography technology, unspecified method	Vinayagam A (2011), Alemu EA (2012), Alemu EA (2012)	3