PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000559658	[[78885393, 78885533], [78886255, 78886353], [78888881, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913205]]	[[78888945, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913136]]
ENST00000348639	[[78885393, 78885533], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913637]]	[[78885452, 78885533], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913136]]
ENST00000326828	[[78887646, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913521]]	[[78888945, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913136]]
ENST00000559002	[[78885393, 78885533], [78888881, 78889074]]	None
ENST00000558903	[[78894117, 78894606], [78899782, 78899866]]	None
ENST00000561128	[[78910721, 78911003], [78911117, 78911257], [78913054, 78913131]]	None
ENST00000559080	[[78910971, 78911003], [78911117, 78911620]]	[[78910971, 78911003], [78911117, 78911138]]
ENST00000559941	[[78911190, 78911257], [78912078, 78912603]]	None
NR_046313	[[78885393, 78885533], [78886255, 78886353], [78888881, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913637]]	None
NM_001166694	[[78885393, 78885533], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913637]]	[[78885452, 78885533], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913136]]
NM_000743	[[78887646, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913637]]	[[78888945, 78889074], [78893594, 78894606], [78909365, 78909475], [78910958, 78911003], [78911117, 78911257], [78913054, 78913136]]

Promoter

Chrom	Start	End	Description
chr15	78913289	78913302	CAGE_peak_4_at_CHRNA3_5end
chr15	78913306	78913349	CAGE_peak_1_at_CHRNA3_5end
chr15	78913353	78913365	CAGE_peak_3_at_CHRNA3_5end
chr15	78913485	78913517	CAGE_peak_2_at_CHRNA3_5end
chr15	78913522	78913543	CAGE_peak_5_at_CHRNA3_5end
chr15	78913628	78913657	CAGE_peak_6_at_CHRNA3_5end
chr15	78913665	78913673	CAGE_peak_9_at_CHRNA3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I078759	78759435	78762399	1.09	[{'connected_gene': 'LOC646934', 'score': 14.61}, {'connected_gene': 'ADAMTS7P3', 'score': 14.4}, {'connected_gene': 'CHRNA5', 'score': 12.85}, {'connected_gene': 'CTSH', 'score': 5.52}, {'connected_gene': 'CHRNA3', 'score': 5.4}, {'connected_gene': 'WDR61', 'score': 4.88}, {'connected_gene': 'LOC105370914', 'score': 0.77}, {'connected_gene': 'MORF4L1', 'score': 0.25}, {'connected_gene': 'ADAMTS7', 'score': 0.23}]
chr15	GH15I078620	78620986	78621045	0.79	[{'connected_gene': 'CHRNA3', 'score': 550.77}, {'connected_gene': 'CHRNA5', 'score': 10.91}, {'connected_gene': 'GC15P078618', 'score': 0.77}, {'connected_gene': 'GC15M078021', 'score': 0.18}]
chr15	GH15I078619	78619092	78620566	0.76	[{'connected_gene': 'CHRNA3', 'score': 550.77}, {'connected_gene': 'GC15P078618', 'score': 550.77}, {'connected_gene': 'CHRNA5', 'score': 55.38}, {'connected_gene': 'GC15M078021', 'score': 0.18}]
chr15	GH15I078621	78621269	78621328	0.73	[{'connected_gene': 'CHRNA3', 'score': 550.77}, {'connected_gene': 'ENSG00000259555', 'score': 0.77}, {'connected_gene': 'GC15M078021', 'score': 0.18}]
chr15	GH15I078661	78661041	78661428	0.39	[{'connected_gene': 'GC15M078663', 'score': 550.77}, {'connected_gene': 'LOC646934', 'score': 550.77}, {'connected_gene': 'RPL18P11', 'score': 550.77}, {'connected_gene': 'PIR32831', 'score': 550.77}, {'connected_gene': 'CHRNA3', 'score': 12.38}, {'connected_gene': 'CHRNB4', 'score': 5.78}, {'connected_gene': 'MORF4L1', 'score': 3.44}, {'connected_gene': 'GC15M078021', 'score': 0.28}]
chr15	GH15I078618	78618499	78618828	0.72	[{'connected_gene': 'GC15P078618', 'score': 550.77}, {'connected_gene': 'CHRNA3', 'score': 0.77}, {'connected_gene': 'ENSG00000279421', 'score': 0.37}, {'connected_gene': 'GC15M078021', 'score': 0.18}]