PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000524230	[[126325894, 126326816], [126327341, 126327476], [126329879, 126329975], [126334197, 126334305], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373998]]	[[126326747, 126326816], [126327341, 126327476], [126329879, 126329975], [126334197, 126334305], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373998]]
ENST00000523403	[[126326353, 126326816], [126327341, 126327476], [126329879, 126329975], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373944]]	[[126326747, 126326816], [126327341, 126327476], [126329879, 126329975], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373944]]
ENST00000519162	[[126290621, 126290888], [126290998, 126291485], [126326493, 126326816], [126327341, 126327398]]	[[126326747, 126326816], [126327341, 126327398]]
ENST00000518740	[[126326331, 126326816], [126327341, 126327476], [126327983, 126328088]]	[[126326747, 126326816], [126327341, 126327476], [126327983, 126328031]]
NM_052883	[[126325894, 126326816], [126327341, 126327476], [126329879, 126329975], [126334197, 126334305], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373967]]	[[126326747, 126326816], [126327341, 126327476], [126329879, 126329975], [126334197, 126334305], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373833]]
NM_001173513	[[126325894, 126326816], [126327341, 126327476], [126329879, 126329975], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373967]]	[[126326747, 126326816], [126327341, 126327476], [126329879, 126329975], [126340584, 126340741], [126341306, 126341383], [126348221, 126348314], [126349554, 126349780], [126350606, 126350722], [126352751, 126352894], [126360874, 126360994], [126362823, 126362896], [126363139, 126363244], [126364953, 126365063], [126366078, 126366139], [126373590, 126373833]]

Promoter

Chrom	Start	End	Description
chr3	126373929	126373992	CAGE_peak_1_at_TXNRD3NB_5end,CAGE_peak_1_at_TXNRD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I126679	126679001	126679773	0.99	[{'connected_gene': 'CHCHD6', 'score': 11.96}, {'connected_gene': 'TXNRD3', 'score': 11.57}, {'connected_gene': 'LOC645852', 'score': 0.44}]
chr3	GH03I126608	126608547	126608606	0.5	[{'connected_gene': 'TXNRD3NB', 'score': 550.77}, {'connected_gene': 'TXNRD3', 'score': 550.25}, {'connected_gene': 'LOC100419878', 'score': 0.37}]
chr3	GH03I126606	126606798	126607810	0.86	[{'connected_gene': 'TXNRD3NB', 'score': 550.77}, {'connected_gene': 'PIR61824', 'score': 0.44}, {'connected_gene': 'TXNRD3', 'score': 0.25}]
chr3	GH03I126907	126907699	126913169	1.71	[{'connected_gene': 'PLXNA1', 'score': 6.77}, {'connected_gene': 'TXNRD3', 'score': 4.74}, {'connected_gene': 'ZXDC', 'score': 1.36}, {'connected_gene': 'PIR53209', 'score': 0.39}, {'connected_gene': 'GC03M126808', 'score': 0.15}, {'connected_gene': 'GC03P126709', 'score': 0.08}, {'connected_gene': 'CHCHD6', 'score': 0.08}]
chr3	GH03I127042	127042805	127044392	0.52	[{'connected_gene': 'PLXNA1', 'score': 6.27}, {'connected_gene': 'TXNRD3', 'score': 5.42}, {'connected_gene': 'GC03M127051', 'score': 0.44}, {'connected_gene': 'PIR55562', 'score': 0.44}, {'connected_gene': 'PIR34743', 'score': 0.44}]
chr3	GH03I126620	126620904	126621571	0.31	[{'connected_gene': 'NUP210P1', 'score': 17.11}, {'connected_gene': 'TXNRD3', 'score': 11.55}, {'connected_gene': 'LOC100419878', 'score': 0.77}, {'connected_gene': 'TXNRD3NB', 'score': 0.39}]
chr3	GH03I126522	126522840	126531392	2.62	[{'connected_gene': 'CHST13', 'score': 609.65}, {'connected_gene': 'TXNRD3NB', 'score': 11.52}, {'connected_gene': 'TXNRD3', 'score': 11.48}, {'connected_gene': 'NUP210P1', 'score': 10.9}, {'connected_gene': 'OR7E29P', 'score': 5.22}, {'connected_gene': 'C3orf22', 'score': 4.5}, {'connected_gene': 'ZXDC', 'score': 1.83}, {'connected_gene': 'UROC1', 'score': 1.75}]
chr3	GH03I126913	126913441	126914156	0.74	[{'connected_gene': 'TXNRD3', 'score': 4.27}, {'connected_gene': 'PIR53209', 'score': 0.44}, {'connected_gene': 'GC03M126808', 'score': 0.15}, {'connected_gene': 'GC03P126709', 'score': 0.08}, {'connected_gene': 'CHCHD6', 'score': 0.08}]
chr3	GH03I127135	127135386	127135750	0.76	[{'connected_gene': 'TXNRD3', 'score': 1.23}, {'connected_gene': 'C3orf56', 'score': 0.22}, {'connected_gene': 'GC03M127051', 'score': 0.17}, {'connected_gene': 'PIR34743', 'score': 0.17}, {'connected_gene': 'GC03M127099', 'score': 0.16}]
chr3	GH03I126582	126582395	126582454	0.61	[{'connected_gene': 'TXNRD3', 'score': 550.19}, {'connected_gene': 'GC03M126565', 'score': 0.37}, {'connected_gene': 'GC03M126599', 'score': 0.37}, {'connected_gene': 'PIR51508', 'score': 0.37}, {'connected_gene': 'RNA5SP138', 'score': 0.37}, {'connected_gene': 'LOC105374090', 'score': 0.34}, {'connected_gene': 'TXNRD3NB', 'score': 0.31}]
chr3	GH03I126654	126654200	126655727	1.81	[{'connected_gene': 'TXNRD3', 'score': 559.63}, {'connected_gene': 'LOC100419878', 'score': 0.29}]
chr3	GH03I126684	126684649	126685782	0.31	[{'connected_gene': 'FAM86JP', 'score': 4.68}, {'connected_gene': 'TXNRD3', 'score': 4.66}, {'connected_gene': 'LOC645852', 'score': 0.39}, {'connected_gene': 'CHCHD6', 'score': 0.37}]