PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000327381	[[56014948, 56015854], [56270237, 56270437], [56435839, 56454613]]	[[56015048, 56015854], [56270237, 56270437], [56435839, 56436786]]
ENST00000518261	[[56438744, 56439309], [56446211, 56446511]]	None
NM_052898	[[56015016, 56015854], [56270237, 56270437], [56435839, 56438714]]	[[56015048, 56015854], [56270237, 56270437], [56435839, 56436786]]

Promoter

Chrom	Start	End	Description
chr8	56014575	56014610	CAGE_peak_2_at_XKR4_5end
chr8	56014644	56014710	CAGE_peak_1_at_XKR4_5end
chr8	56015008	56015048	CAGE_peak_3_at_XKR4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I055156	55156318	55156651	0.23	[{'connected_gene': 'XKR4', 'score': 3.51}, {'connected_gene': 'LOC105375844', 'score': 0.77}, {'connected_gene': 'ENSG00000253976', 'score': 0.39}]
chr8	GH08I055441	55441480	55441747	0.22	[{'connected_gene': 'XKR4', 'score': 6.01}, {'connected_gene': 'SBF1P1', 'score': 0.39}, {'connected_gene': 'GC08M055302', 'score': 0.25}]
chr8	GH08I055439	55439936	55439975	0.23	[{'connected_gene': 'XKR4', 'score': 2.73}, {'connected_gene': 'SBF1P1', 'score': 0.37}, {'connected_gene': 'GC08M055302', 'score': 0.25}]
chr8	GH08I055369	55369487	55369590	0.25	[{'connected_gene': 'XKR4', 'score': 3.04}, {'connected_gene': 'GC08M055302', 'score': 0.34}, {'connected_gene': 'GC08P055254', 'score': 0.13}]
chr8	GH08I055100	55100956	55103491	1.55	[{'connected_gene': 'XKR4', 'score': 550.77}, {'connected_gene': 'GC08P055061', 'score': 0.26}]
chr8	GH08I055124	55124241	55124390	0.31	[{'connected_gene': 'LOC105375844', 'score': 11.39}, {'connected_gene': 'ENSG00000253976', 'score': 0.37}, {'connected_gene': 'XKR4', 'score': 0.34}]
chr8	GH08I055211	55211763	55213566	0.2	[{'connected_gene': 'LOC105375844', 'score': 10.9}, {'connected_gene': 'GC08P055254', 'score': 0.26}, {'connected_gene': 'XKR4', 'score': 0.14}]
chr8	GH08I055192	55192822	55194627	0.38	[{'connected_gene': 'LOC105375844', 'score': 0.29}, {'connected_gene': 'GC08P055254', 'score': 0.21}, {'connected_gene': 'XKR4', 'score': 0.16}]
chr8	GH08I055129	55129302	55129701	0.2	[{'connected_gene': 'LOC105375844', 'score': 11.28}, {'connected_gene': 'ENSG00000253976', 'score': 0.39}, {'connected_gene': 'XKR4', 'score': 0.31}]
chr8	GH08I055118	55118981	55120227	0.56	[{'connected_gene': 'LOC105375844', 'score': 11.37}, {'connected_gene': 'XKR4', 'score': 0.37}, {'connected_gene': 'ENSG00000253976', 'score': 0.34}]
chr8	GH08I055130	55130301	55130450	0.2	[{'connected_gene': 'LOC105375844', 'score': 11.28}, {'connected_gene': 'ENSG00000253976', 'score': 0.39}, {'connected_gene': 'XKR4', 'score': 0.31}]
chr8	GH08I055128	55128761	55128970	0.2	[{'connected_gene': 'LOC105375844', 'score': 11.4}, {'connected_gene': 'ENSG00000253976', 'score': 0.39}, {'connected_gene': 'XKR4', 'score': 0.31}]
chr8	GH08I055521	55521042	55521151	0.74	[{'connected_gene': 'LOC105375843', 'score': 550.77}, {'connected_gene': 'GC08P055536', 'score': 0.37}, {'connected_gene': 'XKR4', 'score': 0.05}]
chr8	GH08I055429	55429731	55429838	0.24	[{'connected_gene': 'SBF1P1', 'score': 0.31}, {'connected_gene': 'GC08M055302', 'score': 0.28}, {'connected_gene': 'XKR4', 'score': 0.05}]
chr8	GH08I055079	55079801	55080050	0.49	[{'connected_gene': 'GC08P055061', 'score': 0.37}, {'connected_gene': 'XKR4', 'score': 0.34}]
chr8	GH08I055313	55313371	55314208	0.43	[{'connected_gene': 'GC08P055254', 'score': 0.22}, {'connected_gene': 'GC08M055302', 'score': 0.18}, {'connected_gene': 'XKR4', 'score': 0.08}]
chr8	GH08I055289	55289979	55290003	0.39	[{'connected_gene': 'GC08P055254', 'score': 0.28}, {'connected_gene': 'GC08M055302', 'score': 0.15}, {'connected_gene': 'XKR4', 'score': 0.09}]
chr8	GH08I055372	55372204	55373340	0.63	[{'connected_gene': 'GC08M055302', 'score': 0.37}, {'connected_gene': 'GC08P055254', 'score': 0.13}, {'connected_gene': 'XKR4', 'score': 0.06}]
chr8	GH08I055219	55219153	55219434	0.43	[{'connected_gene': 'GC08P055254', 'score': 0.28}, {'connected_gene': 'LOC105375844', 'score': 0.22}, {'connected_gene': 'XKR4', 'score': 0.13}]