PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000407595	[[56411257, 56412035], [56419611, 56420575], [56570013, 56570090], [56599478, 56599613], [56602950, 56603070], [56611400, 56613308]]	[[56411759, 56412035], [56419611, 56420575], [56570013, 56570090], [56599478, 56599613], [56602950, 56603070], [56611400, 56611490]]
NM_001080433	[[56411257, 56412035], [56419611, 56420575], [56570013, 56570090], [56599478, 56599613], [56602950, 56603070], [56611400, 56613309]]	[[56411759, 56412035], [56419611, 56420575], [56570013, 56570090], [56599478, 56599613], [56602950, 56603070], [56611400, 56611490]]

Promoter

Chrom	Start	End	Description
chr2	56410925	56410946	CAGE_peak_5_at_CCDC85A_5end
chr2	56410948	56411039	CAGE_peak_2_at_CCDC85A_5end
chr2	56411109	56411130	CAGE_peak_4_at_CCDC85A_5end
chr2	56411131	56411187	CAGE_peak_1_at_CCDC85A_5end
chr2	56411726	56411742	CAGE_peak_3_at_CCDC85A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I056287	56287227	56290193	0.52	[{'connected_gene': 'PPP4R3B', 'score': 4.44}, {'connected_gene': 'GC02P056305', 'score': 0.37}, {'connected_gene': 'RNA5SP93', 'score': 0.23}, {'connected_gene': 'GC02M056236', 'score': 0.23}, {'connected_gene': 'CCDC85A', 'score': 0.15}, {'connected_gene': 'ENSG00000271894', 'score': 0.11}]
chr2	GH02I056740	56740915	56743070	0.88	[{'connected_gene': 'CCDC85A', 'score': 10.02}, {'connected_gene': 'PPIAP63', 'score': 0.44}, {'connected_gene': 'LOC101927213', 'score': 0.08}]
chr2	GH02I056680	56680190	56681949	0.56	[{'connected_gene': 'CCDC85A', 'score': 9.16}, {'connected_gene': 'PPIAP63', 'score': 0.2}, {'connected_gene': 'LOC101927213', 'score': 0.1}]
chr2	GH02I056447	56447657	56450742	1.02	[{'connected_gene': 'CCDC85A', 'score': 10.19}, {'connected_gene': 'LOC101927213', 'score': 0.19}, {'connected_gene': 'GC02P056305', 'score': 0.11}]
chr2	GH02I056443	56443926	56445867	0.62	[{'connected_gene': 'CCDC85A', 'score': 10.88}, {'connected_gene': 'LOC101927213', 'score': 0.18}, {'connected_gene': 'GC02P056305', 'score': 0.12}]
chr2	GH02I056474	56474320	56475455	0.87	[{'connected_gene': 'CCDC85A', 'score': 10.7}, {'connected_gene': 'LOC101927213', 'score': 0.25}, {'connected_gene': 'GC02P056305', 'score': 0.1}]
chr2	GH02I056382	56382031	56383353	0.54	[{'connected_gene': 'CCDC85A', 'score': 4.5}, {'connected_gene': 'GC02P056305', 'score': 0.18}, {'connected_gene': 'LOC101927213', 'score': 0.11}, {'connected_gene': 'ENSG00000271894', 'score': 0.07}]
chr2	GH02I056229	56229522	56230915	0.76	[{'connected_gene': 'CCDC85A', 'score': 19.31}, {'connected_gene': 'LOC100129434', 'score': 17.04}, {'connected_gene': 'RNA5SP93', 'score': 0.44}, {'connected_gene': 'GC02M056236', 'score': 0.44}, {'connected_gene': 'ENSG00000271894', 'score': 0.18}]
chr2	GH02I057179	57179434	57182706	0.62	[{'connected_gene': 'CCDC85A', 'score': 4.31}, {'connected_gene': 'GC02P057126', 'score': 0.22}, {'connected_gene': 'GC02P057351', 'score': 0.09}]
chr2	GH02I056522	56522466	56523505	0.69	[{'connected_gene': 'LOC101927213', 'score': 550.77}, {'connected_gene': 'CCDC85A', 'score': 17.06}, {'connected_gene': 'GC02P056305', 'score': 0.08}]
chr2	GH02I056183	56183600	56185801	1.87	[{'connected_gene': 'LOC100129434', 'score': 560.64}, {'connected_gene': 'CCDC85A', 'score': 555.49}, {'connected_gene': 'ENSG00000271894', 'score': 0.28}]
chr2	GH02I056327	56327829	56328129	0.24	[{'connected_gene': 'GC02P056305', 'score': 0.34}, {'connected_gene': 'CCDC85A', 'score': 0.11}, {'connected_gene': 'ENSG00000271894', 'score': 0.09}, {'connected_gene': 'LOC101927213', 'score': 0.08}]
chr2	GH02I056313	56313279	56316134	0.63	[{'connected_gene': 'GC02P056305', 'score': 0.44}, {'connected_gene': 'CCDC85A', 'score': 0.12}, {'connected_gene': 'ENSG00000271894', 'score': 0.1}, {'connected_gene': 'LOC101927213', 'score': 0.08}]
chr2	GH02I056348	56348430	56348550	0.22	[{'connected_gene': 'GC02P056305', 'score': 0.26}, {'connected_gene': 'CCDC85A', 'score': 0.1}, {'connected_gene': 'LOC101927213', 'score': 0.09}, {'connected_gene': 'ENSG00000271894', 'score': 0.08}]
chr2	GH02I056376	56376952	56378040	0.38	[{'connected_gene': 'GC02P056305', 'score': 0.19}, {'connected_gene': 'LOC101927213', 'score': 0.11}, {'connected_gene': 'CCDC85A', 'score': 0.08}, {'connected_gene': 'ENSG00000271894', 'score': 0.07}]