PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000472487	[[59120410, 59125827], [59126841, 59126899], [59127077, 59127183], [59131170, 59131303], [59132709, 59132898], [59133518, 59133593], [59134303, 59134354], [59134655, 59134710], [59137541, 59137630], [59139244, 59139322], [59141148, 59141252], [59142597, 59142728], [59147456, 59148217], [59150824, 59150923], [59154709, 59154788], [59155897, 59155921], [59156011, 59156089], [59158532, 59158603], [59160800, 59160879], [59165656, 59165764]]	[[59125668, 59125827], [59126841, 59126899], [59127077, 59127183], [59131170, 59131303], [59132709, 59132898], [59133518, 59133593], [59134303, 59134354], [59134655, 59134710], [59137541, 59137630], [59139244, 59139322], [59141148, 59141252], [59142597, 59142728], [59147456, 59148217], [59150824, 59150923], [59154709, 59154788], [59155897, 59155921], [59156011, 59156089], [59158532, 59158603], [59160800, 59160879], [59165656, 59165724]]
ENST00000493821	[[59120411, 59125827], [59126841, 59126899], [59127077, 59127183], [59131170, 59131303], [59132709, 59132898], [59133518, 59133593], [59134303, 59134354], [59134655, 59134710], [59137541, 59137630], [59139244, 59139322], [59141148, 59141252], [59142597, 59142728], [59147456, 59148217], [59150824, 59150923], [59154709, 59154788], [59154965, 59155334]]	None
ENST00000401044	[[59124824, 59125827], [59126841, 59126899], [59127077, 59127183], [59131170, 59131303], [59132709, 59132898], [59133518, 59133593], [59134101, 59134238], [59134655, 59134710], [59137541, 59137630], [59139244, 59139322], [59141148, 59141252], [59142597, 59142728], [59147456, 59148217], [59150824, 59150923], [59154709, 59154788], [59155897, 59155921], [59156011, 59156066]]	None
ENST00000481973	[[59142443, 59142728], [59147456, 59147568]]	None
ENST00000466774	[[59148080, 59148217], [59150824, 59150923], [59156011, 59156089], [59158532, 59158603], [59160800, 59160879], [59165656, 59165752]]	None
ENST00000483003	[[59155859, 59155921], [59156011, 59156089], [59158532, 59158603], [59160800, 59160879], [59165656, 59165744]]	None
ENST00000489282	[[59158077, 59158603], [59160800, 59160879], [59165656, 59165749]]	None
NM_001085487	[[59120410, 59125827], [59126841, 59126899], [59127077, 59127183], [59131170, 59131303], [59132709, 59132898], [59133518, 59133593], [59134303, 59134354], [59134655, 59134710], [59137541, 59137630], [59139244, 59139322], [59141148, 59141252], [59142597, 59142728], [59147456, 59148217], [59150824, 59150923], [59154709, 59154788], [59155897, 59155921], [59156011, 59156089], [59158532, 59158603], [59160800, 59160879], [59165656, 59165747]]	[[59125668, 59125827], [59126841, 59126899], [59127077, 59127183], [59131170, 59131303], [59132709, 59132898], [59133518, 59133593], [59134303, 59134354], [59134655, 59134710], [59137541, 59137630], [59139244, 59139322], [59141148, 59141252], [59142597, 59142728], [59147456, 59148217], [59150824, 59150923], [59154709, 59154788], [59155897, 59155921], [59156011, 59156089], [59158532, 59158603], [59160800, 59160879], [59165656, 59165724]]

Promoter

Chrom	Start	End	Description
chr1	59165724	59165751	CAGE_peak_1_at_MYSM1_5end
chr1	59165763	59165780	CAGE_peak_2_at_MYSM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I059169	59169150	59171458	0.2	[{'connected_gene': 'HSD52', 'score': 24.41}, {'connected_gene': 'MYSM1', 'score': 4.23}, {'connected_gene': 'GC01M059164', 'score': 0.77}, {'connected_gene': 'GC01P059086', 'score': 0.18}, {'connected_gene': 'LINC01358', 'score': 0.07}]
chr1	GH01I058652	58652600	58652878	0.87	[{'connected_gene': 'TACSTD2', 'score': 11.53}, {'connected_gene': 'DAB1', 'score': 11.5}, {'connected_gene': 'OMA1', 'score': 11.5}, {'connected_gene': 'MYSM1', 'score': 5.68}, {'connected_gene': 'GC01M058655', 'score': 0.44}, {'connected_gene': 'GC01P058635', 'score': 0.37}]
chr1	GH01I058539	58539044	58540226	0.49	[{'connected_gene': 'TACSTD2', 'score': 38.76}, {'connected_gene': 'OMA1', 'score': 11.57}, {'connected_gene': 'MYSM1', 'score': 9.54}, {'connected_gene': 'DAB1', 'score': 0.44}, {'connected_gene': 'GC01M058497', 'score': 0.31}]
chr1	GH01I058596	58596396	58597427	0.6	[{'connected_gene': 'TACSTD2', 'score': 8.03}, {'connected_gene': 'OMA1', 'score': 5.83}, {'connected_gene': 'MYSM1', 'score': 4.63}, {'connected_gene': 'GC01M058574', 'score': 0.44}, {'connected_gene': 'AK2P1', 'score': 0.29}]
chr1	GH01I058703	58703474	58705486	0.56	[{'connected_gene': 'JUN', 'score': 9.62}, {'connected_gene': 'LINC01135', 'score': 9.61}, {'connected_gene': 'MYSM1', 'score': 7.56}, {'connected_gene': 'LOC105378751', 'score': 0.39}]
chr1	GH01I059012	59012774	59016746	1.48	[{'connected_gene': 'MYSM1', 'score': 13.22}, {'connected_gene': 'HSD52', 'score': 4.66}, {'connected_gene': 'LINC01135', 'score': 4.28}, {'connected_gene': 'PHBP3', 'score': 0.37}, {'connected_gene': 'ENSG00000241042', 'score': 0.26}, {'connected_gene': 'LINC01358', 'score': 0.18}]
chr1	GH01I058766	58766904	58766939	0.42	[{'connected_gene': 'MYSM1', 'score': 10.26}, {'connected_gene': 'FGGY', 'score': 9.71}, {'connected_gene': 'JUN', 'score': 0.37}, {'connected_gene': 'LOC105378751', 'score': 0.23}]
chr1	GH01I059289	59289516	59294249	1.7	[{'connected_gene': 'MYSM1', 'score': 38.82}, {'connected_gene': 'FGGY', 'score': 14.04}, {'connected_gene': 'LOC105378756', 'score': 11.6}, {'connected_gene': 'GC01M059291', 'score': 0.77}]
chr1	GH01I058249	58249539	58251028	0.94	[{'connected_gene': 'MYSM1', 'score': 11.94}, {'connected_gene': 'ENSG00000272226', 'score': 9.8}, {'connected_gene': 'VKORC1P2', 'score': 0.34}, {'connected_gene': 'GC01P058304', 'score': 0.23}, {'connected_gene': 'DAB1', 'score': 0.06}]
chr1	GH01I058664	58664805	58665540	0.31	[{'connected_gene': 'MYSM1', 'score': 15.92}, {'connected_gene': 'TACSTD2', 'score': 10.85}, {'connected_gene': 'GC01M058655', 'score': 0.44}]
chr1	GH01I058698	58698726	58700783	2	[{'connected_gene': 'MYSM1', 'score': 558.1}, {'connected_gene': 'ENSG00000272226', 'score': 9.91}, {'connected_gene': 'DAB1', 'score': 9.71}, {'connected_gene': 'OMA1', 'score': 9.71}, {'connected_gene': 'GC01M058655', 'score': 0.26}]
chr1	GH01I059564	59564815	59566683	0.84	[{'connected_gene': 'MYSM1', 'score': 11.92}, {'connected_gene': 'GC01P059473', 'score': 0.16}, {'connected_gene': 'MIR4711', 'score': 0.1}, {'connected_gene': 'FGGY', 'score': 0.06}]
chr1	GH01I058670	58670001	58670647	0.2	[{'connected_gene': 'MYSM1', 'score': 11.22}, {'connected_gene': 'GC01M058655', 'score': 0.39}]
chr1	GH01I058710	58710601	58711200	0.54	[{'connected_gene': 'LOC105378751', 'score': 0.77}, {'connected_gene': 'MYSM1', 'score': 0.39}]
chr1	GH01I058779	58779149	58787173	2.33	[{'connected_gene': 'LINC01135', 'score': 565.96}, {'connected_gene': 'JUN', 'score': 550.77}, {'connected_gene': 'MYSM1', 'score': 33.07}, {'connected_gene': 'FGGY', 'score': 5.51}, {'connected_gene': 'LOC105378751', 'score': 0.2}]
chr1	GH01I058761	58761755	58765879	1.47	[{'connected_gene': 'LINC01135', 'score': 11.91}, {'connected_gene': 'JUN', 'score': 11.91}, {'connected_gene': 'MYSM1', 'score': 10.27}, {'connected_gene': 'FGGY', 'score': 9.72}, {'connected_gene': 'LOC105378751', 'score': 0.25}]
chr1	GH01I059018	59018412	59021152	1.53	[{'connected_gene': 'LINC01135', 'score': 10.75}, {'connected_gene': 'JUN', 'score': 10.75}, {'connected_gene': 'MYSM1', 'score': 9.85}, {'connected_gene': 'PHBP3', 'score': 0.34}, {'connected_gene': 'ENSG00000241042', 'score': 0.28}, {'connected_gene': 'LINC01358', 'score': 0.17}]
chr1	GH01I058894	58894802	58905461	2.35	[{'connected_gene': 'LINC01135', 'score': 16.92}, {'connected_gene': 'MYSM1', 'score': 10.99}, {'connected_gene': 'JUN', 'score': 10.88}, {'connected_gene': 'LOC105378753', 'score': 5.49}, {'connected_gene': 'FGGY', 'score': 5.28}, {'connected_gene': 'PIR58695', 'score': 0.44}]
chr1	GH01I058812	58812408	58820209	2.33	[{'connected_gene': 'PIR37218', 'score': 550.77}, {'connected_gene': 'JUN', 'score': 26.96}, {'connected_gene': 'MYSM1', 'score': 11.7}, {'connected_gene': 'LINC01135', 'score': 11.63}, {'connected_gene': 'FGGY', 'score': 2.35}, {'connected_gene': 'ENSG00000272226', 'score': 0.77}, {'connected_gene': 'LOC101926907', 'score': 0.39}, {'connected_gene': 'ENSG00000231740', 'score': 0.29}]
chr1	GH01I059076	59076800	59080635	1.37	[{'connected_gene': 'ENSG00000235215', 'score': 550.77}, {'connected_gene': 'MYSM1', 'score': 10.83}, {'connected_gene': 'LINC01135', 'score': 10.35}, {'connected_gene': 'JUN', 'score': 10.35}, {'connected_gene': 'ENSG00000272226', 'score': 9.99}, {'connected_gene': 'GC01P059086', 'score': 0.44}, {'connected_gene': 'LINC01358', 'score': 0.11}]