PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000320477	[[12254317, 12254420], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277372]]	[[12254382, 12254420], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277269]]
ENST00000522713	[[12254359, 12254955], [12262823, 12262968], [12263598, 12263865], [12264305, 12264452], [12274091, 12274273], [12277121, 12277592]]	[[12254382, 12254955], [12262823, 12262853]]
ENST00000521296	[[12254700, 12254955], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277594]]	None
ENST00000520620	[[12254723, 12254955], [12262823, 12262968], [12264305, 12264452], [12277121, 12277480]]	None
NM_001279	[[12254317, 12254420], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277594]]	[[12254382, 12254420], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277269]]
NM_001318383	[[12254359, 12254955], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277594]]	[[12254815, 12254955], [12262823, 12262968], [12264305, 12264452], [12274091, 12274273], [12277121, 12277269]]
NR_134607	[[12254359, 12254955], [12262823, 12262968], [12263598, 12263865], [12264305, 12264452], [12274091, 12274273], [12277121, 12277594]]	None

Promoter

Chrom	Start	End	Description
chr18	12254319	12254336	CAGE_peak_2_at_CIDEA_5end
chr18	12254353	12254366	CAGE_peak_1_at_CIDEA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I012257	12257421	12257642	0.51	[{'connected_gene': 'CIDEA', 'score': 13.45}, {'connected_gene': 'RNU6-170P', 'score': 11.35}, {'connected_gene': 'TUBB6', 'score': 11.34}, {'connected_gene': 'LOC105371996', 'score': 0.77}, {'connected_gene': 'ENSG00000280302', 'score': 0.34}]
chr18	GH18I012254	12253429	12256701	1.47	[{'connected_gene': 'CIDEA', 'score': 566.06}, {'connected_gene': 'LOC105371996', 'score': 550.77}, {'connected_gene': 'TUBB6', 'score': 11.9}, {'connected_gene': 'RNU6-170P', 'score': 11.28}, {'connected_gene': 'ENSG00000267733', 'score': 5.1}, {'connected_gene': 'PRELID3A', 'score': 4.81}, {'connected_gene': 'ENSG00000267199', 'score': 4.65}, {'connected_gene': 'ENSG00000280302', 'score': 0.34}]
chr18	GH18I012271	12271029	12272651	1.33	[{'connected_gene': 'CIDEA', 'score': 4.85}, {'connected_gene': 'ENSG00000280302', 'score': 0.44}, {'connected_gene': 'LOC105371996', 'score': 0.37}]
chr18	GH18I012258	12258909	12259254	0.54	[{'connected_gene': 'RNU6-170P', 'score': 11.35}, {'connected_gene': 'TUBB6', 'score': 11.35}, {'connected_gene': 'CIDEA', 'score': 9.14}, {'connected_gene': 'LOC105371996', 'score': 0.77}, {'connected_gene': 'ENSG00000280302', 'score': 0.34}]
chr18	GH18I012253	12253141	12253242	0.53	[{'connected_gene': 'LOC105371996', 'score': 550.77}, {'connected_gene': 'CIDEA', 'score': 550.77}, {'connected_gene': 'SPIRE1', 'score': 1.65}, {'connected_gene': 'PPIAP56', 'score': 0.44}]
chr18	GH18I012246	12246848	12248907	0.6	[{'connected_gene': 'PPIAP56', 'score': 550.77}, {'connected_gene': 'CIDEA', 'score': 10.1}]
chr18	GH18I012277	12277496	12284245	1.67	[{'connected_gene': 'ENSG00000280302', 'score': 550.77}, {'connected_gene': 'TUBB6', 'score': 22.77}, {'connected_gene': 'ENSG00000267199', 'score': 9.01}, {'connected_gene': 'PRELID3A', 'score': 7.47}, {'connected_gene': 'ENSG00000267069', 'score': 6.36}, {'connected_gene': 'CIDEA', 'score': 4.84}]