PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000457799	[[157644110, 157644467], [157646465, 157646522]]	None
ENST00000494724	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667119], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670520]]	None
ENST00000477837	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670520]]	[[157648499, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
ENST00000480682	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670520]]	None
ENST00000492769	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665415], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670520]]	[[157648499, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665415], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
ENST00000368186	[[157646270, 157646558], [157648532, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670528]]	[[157646501, 157646558], [157648532, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
ENST00000485028	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670533]]	[[157648499, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
ENST00000368184	[[157646271, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670647]]	[[157648499, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
ENST00000473231	[[157648110, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157667803]]	None
ENST00000468507	[[157648480, 157648975], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659680]]	None
ENST00000478179	[[157666957, 157667084], [157667448, 157667709]]	None
ENST00000496769	[[157667005, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670492, 157670535]]	[[157667005, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
NR_135214	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665415], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670662]]	None
NR_135215	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670662]]	None
NM_001320333	[[157646270, 157646558], [157648532, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670662]]	[[157646501, 157646558], [157648532, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]
NR_135216	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667119], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670662]]	None
NR_135217	[[157646270, 157646558], [157648384, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670662]]	None
NM_052939	[[157647977, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670375], [157670451, 157670647]]	[[157648499, 157648646], [157648731, 157648763], [157650491, 157650560], [157650770, 157650889], [157653006, 157653034], [157659587, 157659707], [157660044, 157660323], [157665118, 157665397], [157665829, 157666117], [157666929, 157667214], [157667448, 157667709], [157668173, 157668419], [157669481, 157669502], [157670248, 157670279]]

Promoter

Chrom	Start	End	Description
chr1	157670333	157670347	CAGE_peak_7_at_FCRL3_5end
chr1	157670355	157670367	CAGE_peak_8_at_FCRL3_5end
chr1	157670380	157670392	CAGE_peak_6_at_FCRL3_5end
chr1	157670537	157670568	CAGE_peak_1_at_FCRL3_5end
chr1	157670658	157670667	CAGE_peak_4_at_FCRL3_5end
chr1	157670670	157670684	CAGE_peak_5_at_FCRL3_5end
chr1	157670686	157670730	CAGE_peak_2_at_FCRL3_5end
chr1	157670738	157670753	CAGE_peak_3_at_FCRL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I157566	157566125	157567786	0.62	[{'connected_gene': 'FCRL5', 'score': 36.21}, {'connected_gene': 'ENSG00000227217', 'score': 10.3}, {'connected_gene': 'FCRL3', 'score': 10.29}, {'connected_gene': 'FCRL4', 'score': 0.29}]
chr1	GH01I157595	157595491	157595580	0.75	[{'connected_gene': 'FCRL5', 'score': 11.25}, {'connected_gene': 'ENSG00000227217', 'score': 10.82}, {'connected_gene': 'FCRL3', 'score': 10.81}, {'connected_gene': 'FCRL2', 'score': 10.06}, {'connected_gene': 'FCRL1', 'score': 9.52}, {'connected_gene': 'FCRL4', 'score': 0.77}]
chr1	GH01I157522	157522164	157525977	0.38	[{'connected_gene': 'FCRL5', 'score': 17.17}, {'connected_gene': 'FCRL3', 'score': 10.22}, {'connected_gene': 'ENSG00000227217', 'score': 9.97}, {'connected_gene': 'PIR33564', 'score': 0.29}, {'connected_gene': 'GC01P157412', 'score': 0.13}]
chr1	GH01I157652	157652801	157653600	0.77	[{'connected_gene': 'RRNAD1', 'score': 53.96}, {'connected_gene': 'PRCC', 'score': 18.96}, {'connected_gene': 'LOC246784', 'score': 11.72}, {'connected_gene': 'FCRL3', 'score': 9.88}, {'connected_gene': 'LRRC71', 'score': 9.75}, {'connected_gene': 'CD1E', 'score': 9.7}, {'connected_gene': 'MIR765', 'score': 4.66}, {'connected_gene': 'LOC105371457', 'score': 0.44}, {'connected_gene': 'ENSG00000233712', 'score': 0.39}]
chr1	GH01I157721	157721259	157727608	1.05	[{'connected_gene': 'VDAC1P9', 'score': 550.77}, {'connected_gene': 'FCRL3', 'score': 23.98}, {'connected_gene': 'ENSG00000227217', 'score': 11.71}, {'connected_gene': 'FCRL2', 'score': 10.56}, {'connected_gene': 'FCRL1', 'score': 10.05}, {'connected_gene': 'SONP1', 'score': 0.37}]
chr1	GH01I157707	157707054	157711288	0.31	[{'connected_gene': 'SONP1', 'score': 550.77}, {'connected_gene': 'FCRL3', 'score': 8.99}, {'connected_gene': 'VDAC1P9', 'score': 0.37}]
chr1	GH01I157703	157703789	157705359	0.31	[{'connected_gene': 'FCRL3', 'score': 17.66}, {'connected_gene': 'SONP1', 'score': 0.77}]
chr1	GH01I157733	157733540	157735611	0.51	[{'connected_gene': 'FCRL3', 'score': 11.54}, {'connected_gene': 'FCRL2', 'score': 10.76}, {'connected_gene': 'ENSG00000227217', 'score': 10.72}, {'connected_gene': 'FCRL1', 'score': 10.25}, {'connected_gene': 'VDAC1P9', 'score': 0.44}, {'connected_gene': 'PIR43091', 'score': 0.28}]
chr1	GH01I157695	157695106	157702762	1.01	[{'connected_gene': 'FCRL3', 'score': 570.67}, {'connected_gene': 'ENSG00000227217', 'score': 0.44}]
chr1	GH01I157849	157849201	157850200	0.31	[{'connected_gene': 'FCRL1', 'score': 11.19}, {'connected_gene': 'CD5L', 'score': 11.08}, {'connected_gene': 'FCRL2', 'score': 10.75}, {'connected_gene': 'FCRL3', 'score': 10.03}, {'connected_gene': 'MRPS21P2', 'score': 0.39}]
chr1	GH01I157278	157278653	157279068	0.83	[{'connected_gene': 'LOC105371456', 'score': 550.77}, {'connected_gene': 'LOC105371455', 'score': 6.66}, {'connected_gene': 'FCRL3', 'score': 1.37}]
chr1	GH01I157773	157773452	157774930	0.52	[{'connected_gene': 'PIR43091', 'score': 550.77}, {'connected_gene': 'FCRL3', 'score': 18.13}, {'connected_gene': 'FCRL1', 'score': 15.52}, {'connected_gene': 'FCRL5', 'score': 9.46}, {'connected_gene': 'FCRL2', 'score': 0.77}]